BRADI2G46230 (Brachypodium distachyon)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 BRADI2G46230 T205234_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.645 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G46230.1 Homeodomain 49 105

Links

Other Homeodomain family TFs
Other Brachypodium distachyon TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.867
F775_01844 Aegilops tauschii F775_01844 I 0.867
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.864
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.864
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.860
Si004333m.g Setaria italica Si004333m.g I 0.860
OB01G35240 Oryza brachyantha OB01G35240 I 0.860
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.828
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.828
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.828
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.828
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.828
OS01G0672201 Oryza sativa OS01G0672201 I 0.828
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.828
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.828
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.717
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.699
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.699
Si020949m.g Setaria italica Si020949m.g I 0.699
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.697
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.697
OBART05G25730 Oryza barthii OBART05G25730 I 0.679
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.679
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.679
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.679
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.679
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.679
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.679
Ca_11272 Cicer arietinum Ca_11272 I 0.678
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.675
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.667
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.663
TCM_008214 Theobroma cacao TCM_008214 I 0.663
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.651
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.647
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.647
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.647
Pm010098 Prunus mume Pm010098 I 0.647
Cla009803 Citrullus lanatus Cla009803 I 0.647
Ca_00337 Cicer arietinum Ca_00337 I 0.647
Ca_06343 Cicer arietinum Ca_06343 I 0.647
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.647
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.647
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.647
PK06068.1 Cannabis sativa PK06068.1 I 0.647
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.647
MDP0000192108 Malus domestica MDP0000192108 I 0.647
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.647
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.647
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.647
mgf006858m Mimulus guttatus mgf006858m I 0.647
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.647
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.647
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.647
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.647
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.647
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.646
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.645
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.645
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.645
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.645
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.645
RLT1 Arabidopsis thaliana AT1G28420 D 0.645
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.645
Bo3g143570 Brassica oleracea Bo3g143570 I 0.645
Bra032908 Brassica rapa Bra032908 I 0.645
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.645
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.645
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.645
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.645
PK13272.1 Cannabis sativa PK13272.1 I 0.645
Bo5g055970 Brassica oleracea Bo5g055970 I 0.645
Bra010869 Brassica rapa Bra010869 I 0.645
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.645
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.644
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.643
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.643
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.637
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.635
MDP0000288192 Malus domestica MDP0000288192 I 0.635
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.635
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.635
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.635
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.635
Bra033725 Brassica rapa Bra033725 I 0.633
Bo7g067190 Brassica oleracea Bo7g067190 I 0.633
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.631
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.631
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.631
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.631
29983.m003128 Ricinus communis 29983.m003128 I 0.631
TCM_029805 Theobroma cacao TCM_029805 I 0.631
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.631
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.631
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.631
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.631
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.631
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.631
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.631
mgf006635m Mimulus guttatus mgf006635m I 0.629
RLT2 Arabidopsis thaliana AT5G44180 I 0.629
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.625
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.625
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.625
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.623
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.623
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.623
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.619
30190.m011307 Ricinus communis 30190.m011307 I 0.611
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.600
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.600