CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
CBG24578
(
Caenorhabditis briggsae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
CBG24578
T205595_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBG24578
M02065_2.00
Caenorhabditis briggsae
NNNTGACAKSTN
NASMTGTCANNN
PBM
Weirauch et al.(2014)
pTH6524
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02065_2.00
Homeodomain
1
58
RKVPKVFSKEAITKFRAWLFQNLAHPYPSEEQKKQLAKETGLTILQVNNWFINARRRI
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG24578
Homeodomain
553
610
RKVPKVFSKEAITKFRAWLFQNLAHPYPSEEQKKQLAKETGLTILQVNNWFINARRRI
Links
Other
Homeodomain
family TFs
Other
Caenorhabditis briggsae
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy