CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
CGI_10013448
(
Crassostrea gigas
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
CGI_10013448
T205835_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hmx1
M00524_2.00
Mus musculus
NHDAKYRNNN
NNNYRMTHDN
PBM
Berger et al.(2008)
Hmx1_3423
0.759
0.754
HMX1
M03243_2.00
Homo sapiens
NNTTAAKTGNY
RNCAMTTAANN
SELEX
Jolma et al.(2013)
HMX1_1
0.759
0.754
HMX3
M03233_2.00
Homo sapiens
NNNTAAKTGNN
NNCAMTTANNN
SELEX
Jolma et al.(2013)
HMX3_1
0.759
0.754
Hmx
M03882_2.00
Drosophila melanogaster
NYRAKYGN
NCRMTYRN
SELEX
Nitta et al.(2015)
Hmx_1
0.759
0.754
HMX1
M05392_2.00
Homo sapiens
BNYAAKTGN
NCAMTTRNV
SELEX
Yin et al.(2017)
HMX1_eDBD_HT-SELEX
0.759
0.754
Hmx
M06554_2.00
Drosophila melanogaster
TTAATTG
CAATTAA
B1H
Mathelier et al.(2014)
MA0192.1
0.759
0.754
Hmx
M06386_2.00
Drosophila melanogaster
TTAATTG
CAATTAA
B1H
Zhu et al.(2011)
Hmx_Cell_FBgn0085448
0.759
0.754
Hmx
M06387_2.00
Drosophila melanogaster
TTAATTG
CAATTAA
B1H
Zhu et al.(2011)
Hmx_SOLEXA_FBgn0085448
0.759
0.754
HMX3
M10754_2.00
Homo sapiens
CAAGTGCGTG
CACGCACTTG
Transfac
Matys et al.(2006)
V$HMX1_01
0.759
0.754
HMX1
M05393_2.00
Homo sapiens
VNYAAKTGB
VCAMTTRNB
SELEX
Yin et al.(2017)
HMX1_eDBD_Methyl-HT-SELEX
0.759
0.754
Hmx2
M00507_2.00
Mus musculus
NHRANYGNNN
NNNCRNTYDN
PBM
Berger et al.(2008)
Hmx2_3424
0.757
0.754
HMX2
M03234_2.00
Homo sapiens
NNTTAAKTGNN
NNCAMTTAANN
SELEX
Jolma et al.(2013)
HMX2_1
0.757
0.754
HMX2
M05373_2.00
Homo sapiens
GNHRAKYGS
SCRMTYDNC
SELEX
Yin et al.(2017)
HMX2_eDBD_HT-SELEX
0.757
0.754
HMX2
M05375_2.00
Homo sapiens
NTTAAKTGNN
NNCAMTTAAN
SELEX
Yin et al.(2017)
HMX2_FL_HT-SELEX
0.757
0.754
HMX2
M05374_2.00
Homo sapiens
NNTAAKTGN
NCAMTTANN
SELEX
Yin et al.(2017)
HMX2_eDBD_Methyl-HT-SELEX
0.757
0.754
HMX2
M05376_2.00
Homo sapiens
NTTAAKTGNN
NNCAMTTAAN
SELEX
Yin et al.(2017)
HMX2_FL_Methyl-HT-SELEX
0.757
0.754
Hmx3_CONSTRUCT
M00537_2.00
PBM CONSTRUCTS
NHDADYRNN
NNYRHTHDN
PBM
Berger et al.(2008)
Hmx3_3490
0.746
0.737
Dfd
M03784_2.00
Drosophila melanogaster
VNTAAYKRBN
NVYMRTTANB
SELEX
Nitta et al.(2015)
Dfd_1
0.679
0.561
Dfd
M03785_2.00
Drosophila melanogaster
VYTAATKAYN
NRTMATTARB
SELEX
Nitta et al.(2015)
Dfd_2
0.679
0.561
Dfd
M06481_2.00
Drosophila melanogaster
YTAATGA
TCATTAR
B1H
Mathelier et al.(2014)
MA0186.1
0.679
0.561
Dfd
M06226_2.00
Drosophila melanogaster
VYTAATGA
TCATTAAB
B1H
Zhu et al.(2011)
Dfd_Cell_FBgn0000439
0.679
0.561
Dfd
M06227_2.00
Drosophila melanogaster
TTAATKRY
RYMATTAA
B1H
Zhu et al.(2011)
Dfd_FlyReg_FBgn0000439
0.679
0.561
Dfd
M06228_2.00
Drosophila melanogaster
NBTAATKR
YMATTAVN
B1H
Zhu et al.(2011)
Dfd_SOLEXA_FBgn0000439
0.679
0.561
Dfd
M09675_2.00
Drosophila melanogaster
TTAATKRB
VYMATTAA
Misc
Kulakovskiy et al.(2009)
Dfd
0.679
0.561
Dfd
M10784_2.00
Drosophila melanogaster
NNNNRKTAATNNNNNN
NNNNNNATTAMYNNNN
Transfac
Matys et al.(2006)
I$DFD_01
0.679
0.561
MEOX2
M03103_2.00
Homo sapiens
NNTRATKASN
NSTMATYANN
SELEX
Jolma et al.(2013)
MEOX2_1
0.677
0.561
MEOX2
M03104_2.00
Homo sapiens
NTAATTANVNTAATTAV
BTAATTANBNTAATTAN
SELEX
Jolma et al.(2013)
MEOX2_2
0.677
0.561
MEOX2
M03105_2.00
Homo sapiens
HTAATGATGATKAN
NTMATCATCATTAD
SELEX
Jolma et al.(2013)
MEOX2_3
0.677
0.561
Meox2
M03271_2.00
Mus musculus
NTAATKAN
NTMATTAN
SELEX
Jolma et al.(2013)
Meox2_1
0.677
0.561
MEOX2
M04988_2.00
Homo sapiens
NTDAYGHB
VDCRTHAN
SELEX
Yin et al.(2017)
MEOX2_FL_HT-SELEX_1
0.677
0.561
MEOX2
M04989_2.00
Homo sapiens
NTVATBRV
BYVATBAN
SELEX
Yin et al.(2017)
MEOX2_FL_HT-SELEX_2
0.677
0.561
Meox2
M10771_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEOX2_05
0.677
0.561
MEOX2
M04990_2.00
Homo sapiens
NTAAYGHB
VDCRTTAN
SELEX
Yin et al.(2017)
MEOX2_FL_Methyl-HT-SELEX_1
0.677
0.561
MEOX2
M04991_2.00
Homo sapiens
NTVATKRN
NYMATBAN
SELEX
Yin et al.(2017)
MEOX2_FL_Methyl-HT-SELEX_2
0.677
0.561
NK7.1
M03847_2.00
Drosophila melanogaster
VTTAAAYGDTD
HAHCRTTTAAB
SELEX
Nitta et al.(2015)
NK7.1_1
0.667
0.614
NK7.1
M03848_2.00
Drosophila melanogaster
NSTTAATTGVY
RBCAATTAASN
SELEX
Nitta et al.(2015)
NK7.1_2
0.667
0.614
NK7.1
M06524_2.00
Drosophila melanogaster
TTAATDR
YHATTAA
B1H
Mathelier et al.(2014)
MA0196.1
0.667
0.614
NK7.1
M06323_2.00
Drosophila melanogaster
NTTAATDR
YHATTAAN
B1H
Zhu et al.(2011)
NK7.1_Cell_FBgn0024321
0.667
0.614
NK7.1
M06324_2.00
Drosophila melanogaster
YTAATDR
YHATTAR
B1H
Zhu et al.(2011)
NK7.1_SOLEXA_FBgn0024321
0.667
0.614
TLX3
M05233_2.00
Homo sapiens
NAATKGNNNNNNNNNNNNNCAATTN
NAATTGNNNNNNNNNNNNNCMATTN
SELEX
Yin et al.(2017)
TLX3_eDBD_HT-SELEX
0.659
0.544
TLX3
M05235_2.00
Homo sapiens
NAATTGNNNNNHNNNNCAATTN
NAATTGNNNNDNNNNNCAATTN
SELEX
Yin et al.(2017)
TLX3_FL_HT-SELEX
0.659
0.544
TLX3
M05234_2.00
Homo sapiens
NAATTGNNNNNNNNNNDCAATTD
HAATTGHNNNNNNNNNNCAATTN
SELEX
Yin et al.(2017)
TLX3_eDBD_Methyl-HT-SELEX
0.659
0.544
TLX3
M05236_2.00
Homo sapiens
HAATTRNNNNNNNNNYHATTV
BAATDRNNNNNNNNNYAATTD
SELEX
Yin et al.(2017)
TLX3_FL_Methyl-HT-SELEX
0.659
0.544
lms
M03863_2.00
Drosophila melanogaster
BTAATTRV
BYAATTAV
SELEX
Nitta et al.(2015)
CG13424_1
0.653
0.544
lms
M03864_2.00
Drosophila melanogaster
HTWATTRDWTDATTRR
YYAATHAWHYAATWAD
SELEX
Nitta et al.(2015)
lms_1
0.653
0.544
lms
M06536_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Mathelier et al.(2014)
MA0175.1
0.653
0.544
lms
M06347_2.00
Drosophila melanogaster
NYTAATKR
YMATTARN
B1H
Zhu et al.(2011)
CG13424_Cell_FBgn0034520
0.653
0.544
lms
M06348_2.00
Drosophila melanogaster
NNHTAATDRN
NYHATTADNN
B1H
Zhu et al.(2011)
CG13424_SOLEXA_2_FBgn0034520
0.653
0.544
lms
M06349_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Zhu et al.(2011)
CG13424_SOLEXA_FBgn0034520
0.653
0.544
Q24780_9CNID
M02205_2.00
Eleutheria dichotoma
NNYTAATTAMN
NKTAATTARNN
PBM
Weirauch et al.(2014)
pTH6308
0.648
0.544
CG18599
M06539_2.00
Drosophila melanogaster
HTAATKA
TMATTAD
B1H
Mathelier et al.(2014)
MA0177.1
0.638
0.509
CG18599
M06354_2.00
Drosophila melanogaster
HTAATKA
TMATTAD
B1H
Zhu et al.(2011)
CG18599_Cell_FBgn0038592
0.638
0.509
CG18599
M06355_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Zhu et al.(2011)
CG18599_SOLEXA_FBgn0038592
0.638
0.509
repo
M03826_2.00
Drosophila melanogaster
VTTAATTARB
VYTAATTAAB
SELEX
Nitta et al.(2015)
repo_1
0.635
0.509
repo
M03827_2.00
Drosophila melanogaster
VKYAATTRRN
NYYAATTRMB
SELEX
Nitta et al.(2015)
repo_2
0.635
0.509
repo
M03828_2.00
Drosophila melanogaster
VBYAATTRVNNBYAATTRVB
VBYAATTRVNNBYAATTRVB
SELEX
Nitta et al.(2015)
repo_3
0.635
0.509
repo
M06511_2.00
Drosophila melanogaster
TTAATTA
TAATTAA
B1H
Mathelier et al.(2014)
MA0240.1
0.635
0.509
repo
M06301_2.00
Drosophila melanogaster
DTTAATTA
TAATTAAH
B1H
Zhu et al.(2011)
Repo_Cell_FBgn0011701
0.635
0.509
repo
M06302_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Zhu et al.(2011)
Repo_SOLEXA_FBgn0011701
0.635
0.509
Hoxa4
M00383_2.00
Mus musculus
NTAATBDNN
NNHVATTAN
PBM
Berger et al.(2008)
Hoxa4_3426
0.634
0.544
HOXA4
M05381_2.00
Homo sapiens
NTAATKRY
RYMATTAN
SELEX
Yin et al.(2017)
HOXA4_eDBD_HT-SELEX
0.634
0.544
HOXA4
M10755_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA4_Q2
0.634
0.544
HOXA4
M05382_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXA4_eDBD_Methyl-HT-SELEX
0.634
0.544
HOXD4
M05273_2.00
Homo sapiens
NTMATKRV
BYMATKAN
SELEX
Yin et al.(2017)
HOXD4_eDBD_HT-SELEX
0.634
0.526
HOXD4
M05276_2.00
Homo sapiens
NTAATKRB
VYMATTAN
SELEX
Yin et al.(2017)
HOXD4_FL_HT-SELEX
0.634
0.526
HOXD4
M05274_2.00
Homo sapiens
NTMATKRN
NYMATKAN
SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_1
0.634
0.526
HOXD4
M05275_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_2
0.634
0.526
HOXD4
M05277_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_1
0.634
0.526
HOXD4
M05278_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_2
0.634
0.526
Meox1
M00384_2.00
Mus musculus
NTRATKRNN
NNYMATYAN
PBM
Berger et al.(2008)
Meox1_2310
0.632
0.526
MEOX1
M03077_2.00
Homo sapiens
NNTAATTASN
NSTAATTANN
SELEX
Jolma et al.(2013)
MEOX1_1
0.632
0.526
MEOX1
M04901_2.00
Homo sapiens
NTDAYGHB
VDCRTHAN
SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_1
0.632
0.526
MEOX1
M04902_2.00
Homo sapiens
NTMATKRN
NYMATKAN
SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_2
0.632
0.526
MEOX1
M04903_2.00
Homo sapiens
NTAAYGWB
VWCRTTAN
SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_1
0.632
0.526
MEOX1
M04904_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_2
0.632
0.526
Evx2
M00393_2.00
Mus musculus
NNTAAYNN
NNRTTANN
PBM
Berger et al.(2008)
Evx2_2645
0.629
0.509
Evx1
M00395_2.00
Mus musculus
NTAATBDNN
NNHVATTAN
PBM
Berger et al.(2008)
Evx1_3952
0.629
0.509
vab-7
M02186_2.00
Caenorhabditis elegans
KTAATTAK
MTAATTAM
PBM
Weirauch et al.(2014)
pTH6104
0.629
0.509
EVX1
M03102_2.00
Homo sapiens
NNTAATBRBN
NVYVATTANN
SELEX
Jolma et al.(2013)
EVX1_1
0.629
0.509
EVX2
M03215_2.00
Homo sapiens
NNTAATBRBN
NVYVATTANN
SELEX
Jolma et al.(2013)
EVX2_1
0.629
0.509
EVX1
M04985_2.00
Homo sapiens
VTAATKAB
VTMATTAB
SELEX
Yin et al.(2017)
EVX1_eDBD_HT-SELEX
0.629
0.509
EVX2
M05295_2.00
Homo sapiens
NTAATKAN
NTMATTAN
SELEX
Yin et al.(2017)
EVX2_eDBD_HT-SELEX
0.629
0.509
EVX2
M09158_2.00
Homo sapiens
NBTTTATKRCHNN
NNDGYMATAAAVN
Misc
Kulakovskiy et al.(2013)
EVX2_HUMAN.H11MO.0.A
0.629
0.509
Evx1
M09174_2.00
Mus musculus
WGATTTATDRBHN
NDVYHATAAATCW
Misc
Kulakovskiy et al.(2013)
EVX1_MOUSE.H11MO.0.C
0.629
0.509
Evx2
M09173_2.00
Mus musculus
BTTTATKRCHBN
NVDGYMATAAAV
Misc
Kulakovskiy et al.(2013)
EVX2_MOUSE.H11MO.0.A
0.629
0.509
EVX2
M10736_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EVX2_04
0.629
0.509
EVX1
M04986_2.00
Homo sapiens
NTMATKAN
NTMATKAN
SELEX
Yin et al.(2017)
EVX1_eDBD_Methyl-HT-SELEX_1
0.629
0.509
EVX1
M04987_2.00
Homo sapiens
HTWAYGAB
VTCRTWAD
SELEX
Yin et al.(2017)
EVX1_eDBD_Methyl-HT-SELEX_2
0.629
0.509
EVX2
M05296_2.00
Homo sapiens
NTAATKAN
NTMATTAN
SELEX
Yin et al.(2017)
EVX2_eDBD_Methyl-HT-SELEX_1
0.629
0.509
EVX2
M05297_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
EVX2_eDBD_Methyl-HT-SELEX_2
0.629
0.509
Pdx1
M00446_2.00
Mus musculus
NWRAYNNN
NNNRTYWN
PBM
Berger et al.(2008)
Ipf1_3815
0.622
0.509
SPU_026099
M02175_2.00
Strongylocentrotus purpuratus
KTAATTRB
VYAATTAM
PBM
Weirauch et al.(2014)
pTH6140
0.622
0.509
PDX1
M03155_2.00
Homo sapiens
NTAATTRNNNYTAATTRN
NYAATTARNNNYAATTAN
SELEX
Jolma et al.(2013)
PDX1_1
0.622
0.509
PDX1
M03156_2.00
Homo sapiens
BTAATKRN
NYMATTAV
SELEX
Jolma et al.(2013)
PDX1_2
0.622
0.509
PDX1
M05161_2.00
Homo sapiens
YTAATKRB
VYMATTAR
SELEX
Yin et al.(2017)
PDX1_eDBD_HT-SELEX
0.622
0.509
PDX1
M09147_2.00
Homo sapiens
TGATWGATK
MATCWATCA
Misc
Kulakovskiy et al.(2013)
PDX1_HUMAN.H11MO.0.A
0.622
0.509
Pdx1
M09192_2.00
Mus musculus
VYTAATGRB
VYCATTARB
Misc
Kulakovskiy et al.(2013)
PDX1_MOUSE.H11MO.0.B
0.622
0.509
Pdx1
M09571_2.00
Mus musculus
TGATTRATKR
YMATYAATCA
Misc
Heinz et al.(2010)
Islet-Pdx1_SRA008281
0.622
0.509
PDX1
M10699_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_01
0.622
0.509
PDX1
M10700_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_02
0.622
0.509
PDX1
M10701_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_03
0.622
0.509
PDX1
M10702_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_04
0.622
0.509
PDX1
M10703_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_05
0.622
0.509
PDX1
M10704_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q4_01
0.622
0.509
PDX1
M10705_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q4
0.622
0.509
PDX1
M10706_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q5_01
0.622
0.509
PDX1
M10707_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q5
0.622
0.509
PDX1
M10708_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q6
0.622
0.509
PDX1
M05162_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_1
0.622
0.509
PDX1
M05163_2.00
Homo sapiens
YTAATKRB
VYMATTAR
SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_2
0.622
0.509
Scr
M03799_2.00
Drosophila melanogaster
BTAATKRB
VYMATTAV
SELEX
Nitta et al.(2015)
Scr_1
0.622
0.526
Scr
M06496_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Mathelier et al.(2014)
MA0203.1
0.622
0.526
Scr
M06266_2.00
Drosophila melanogaster
HVYTAATKA
TMATTARBD
B1H
Zhu et al.(2011)
Scr_Cell_FBgn0003339
0.622
0.526
Scr
M06267_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Zhu et al.(2011)
Scr_SOLEXA_FBgn0003339
0.622
0.526
HOXC4
M00330_2.00
Homo sapiens
YTAATTRB
VYAATTAR
PBM
Barrera et al.(2016)
HOXC4_REF
0.622
0.509
Hoxc5
M00422_2.00
Mus musculus
NWRATND
HNATYWN
PBM
Berger et al.(2008)
Hoxc5_2630
0.622
0.509
Hoxa5
M00478_2.00
Mus musculus
NTAATNDNN
NNHNATTAN
PBM
Berger et al.(2008)
Hoxa5_3415
0.622
0.509
Hoxb4
M00479_2.00
Mus musculus
NTAATNDNN
NNHNATTAN
PBM
Berger et al.(2008)
Hoxb4_2627
0.622
0.509
Hoxb5
M00480_2.00
Mus musculus
NWDWTNNNN
NNNNAWHWN
PBM
Berger et al.(2008)
Hoxb5_3122
0.622
0.509
Hoxc4
M00530_2.00
Mus musculus
NWAATNDNN
NNHNATTWN
PBM
Berger et al.(2008)
Hoxc4_3491
0.622
0.509
HOXB5
M03125_2.00
Homo sapiens
NNKAATKRNN
NNYMATTMNN
SELEX
Jolma et al.(2013)
HOXB5_1
0.622
0.509
HOXA5
M04968_2.00
Homo sapiens
STAATKRS
SYMATTAS
SELEX
Yin et al.(2017)
HOXA5_eDBD_HT-SELEX
0.622
0.509
HOXA5
M04971_2.00
Homo sapiens
NTMATKRB
VYMATKAN
SELEX
Yin et al.(2017)
HOXA5_FL_HT-SELEX
0.622
0.509
HOXB4
M05343_2.00
Homo sapiens
YTAATKAY
RTMATTAR
SELEX
Yin et al.(2017)
HOXB4_FL_HT-SELEX
0.622
0.509
HOXB5
M05051_2.00
Homo sapiens
NTAATKRV
BYMATTAN
SELEX
Yin et al.(2017)
HOXB5_eDBD_HT-SELEX
0.622
0.509
HOXB5
M05054_2.00
Homo sapiens
STMATKAB
VTMATKAS
SELEX
Yin et al.(2017)
HOXB5_FL_HT-SELEX
0.622
0.509
HOXC4
M05385_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXC4_FL_HT-SELEX
0.622
0.509
HOXB4
M09162_2.00
Homo sapiens
YTAATKRS
SYMATTAR
Misc
Kulakovskiy et al.(2013)
HXB4_HUMAN.H11MO.0.B
0.622
0.509
Hoxb4
M09204_2.00
Mus musculus
YTAATKRS
SYMATTAR
Misc
Kulakovskiy et al.(2013)
HXB4_MOUSE.H11MO.0.A
0.622
0.509
Hoxb4
M09576_2.00
Mus musculus
TGATDRATKRSN
NSYMATYHATCA
Misc
Heinz et al.(2010)
ES-Hoxb4_GSE34014
0.622
0.509
HOXA5
M10652_2.00
Homo sapiens
NGRDBKBDHNBAVTAATKRRGRDVDDDGSR
YSCHHHBHYCYYMATTABTVNDHVMVHYCN
Transfac
Matys et al.(2006)
V$HOX13_01
0.622
0.509
HOXA5
M08457_2.00
Homo sapiens
CDBWAATK
MATTWVHG
COMPILED
Mathelier et al.(2014)
MA0158.1
0.622
0.509
HOXC4
M00328_2.00
Homo sapiens
YTAATTAB
VTAATTAR
PBM
Barrera et al.(2016)
HOXC4_N178S
0.622
0.509
HOXC4
M00329_2.00
Homo sapiens
NTAATKRNN
NNYMATTAN
PBM
Barrera et al.(2016)
HOXC4_R158L
0.622
0.509
HOXA5
M04969_2.00
Homo sapiens
BTAATKRV
BYMATTAV
SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_1
0.622
0.509
HOXA5
M04970_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_2
0.622
0.509
HOXA5
M04972_2.00
Homo sapiens
NTMATKRN
NYMATKAN
SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_1
0.622
0.509
HOXA5
M04973_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_2
0.622
0.509
HOXB4
M05344_2.00
Homo sapiens
HTAAYGAY
RTCRTTAD
SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_1
0.622
0.509
HOXB4
M05345_2.00
Homo sapiens
HTAAYKAB
VTMRTTAD
SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_2
0.622
0.509
HOXB5
M05052_2.00
Homo sapiens
NTMATKRN
NYMATKAN
SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_1
0.622
0.509
HOXB5
M05053_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_2
0.622
0.509
HOXB5
M05055_2.00
Homo sapiens
NTMATKAB
VTMATKAN
SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_1
0.622
0.509
HOXB5
M05056_2.00
Homo sapiens
HTAAYGAY
RTCRTTAD
SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_2
0.622
0.509
HOXC4
M05386_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_1
0.622
0.509
HOXC4
M05387_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_2
0.622
0.509
VAX2
M00284_2.00
Homo sapiens
NNTAATND
HNATTANN
PBM
Barrera et al.(2016)
VAX2_REF
0.620
0.544
Vax1
M00398_2.00
Mus musculus
NTAATNDNN
NNHNATTAN
PBM
Berger et al.(2008)
Vax1_3499
0.620
0.544
Vax2
M00464_2.00
Mus musculus
NTAATDDNN
NNHHATTAN
PBM
Berger et al.(2008)
Vax2_3500
0.620
0.544
VAX2
M03119_2.00
Homo sapiens
YTAATKAN
NTMATTAR
SELEX
Jolma et al.(2013)
VAX2_1
0.620
0.544
VAX2
M05030_2.00
Homo sapiens
BTAATTRV
BYAATTAV
SELEX
Yin et al.(2017)
VAX2_FL_HT-SELEX
0.620
0.544
Vax1
M10764_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VAX1_04
0.620
0.544
VAX2
M05031_2.00
Homo sapiens
BTAATTRV
BYAATTAV
SELEX
Yin et al.(2017)
VAX2_FL_Methyl-HT-SELEX
0.620
0.544
btn
M03832_2.00
Drosophila melanogaster
NNTAATKANB
VNTMATTANN
SELEX
Nitta et al.(2015)
btn_1
0.616
0.544
btn
M03833_2.00
Drosophila melanogaster
VNTAATKABN
NVTMATTANB
SELEX
Nitta et al.(2015)
btn_2
0.616
0.544
btn
M06515_2.00
Drosophila melanogaster
DTAATKA
TMATTAH
B1H
Mathelier et al.(2014)
MA0215.1
0.616
0.544
btn
M06307_2.00
Drosophila melanogaster
NDTAATKA
TMATTAHN
B1H
Zhu et al.(2011)
Btn_Cell_FBgn0014949
0.616
0.544
btn
M06308_2.00
Drosophila melanogaster
HTAATKA
TMATTAD
B1H
Zhu et al.(2011)
Btn_SOLEXA_FBgn0014949
0.616
0.544
VAX2
M00283_2.00
Homo sapiens
NNTAAWNDNN
NNHNWTTANN
PBM
Barrera et al.(2016)
VAX2_L139M
0.614
0.526
TLX2
M02087_2.00
Homo sapiens
NYRDNNNNNN
NNNNNNHYRN
PBM
Weirauch et al.(2014)
pTH6482
0.614
0.526
Tlx2
M00526_2.00
Mus musculus
WTTAAWTA
TAWTTAAW
PBM
Berger et al.(2008)
Tlx2_3498
0.614
0.526
TLX2
M05020_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Yin et al.(2017)
TLX2_eDBD_HT-SELEX
0.614
0.526
TLX2
M10672_2.00
Homo sapiens
BNGTAAKDNB
VNHMTTACNV
Transfac
Matys et al.(2006)
V$NCX_01
0.614
0.526
TLX2
M05021_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
TLX2_eDBD_Methyl-HT-SELEX
0.614
0.526
C15
M06505_2.00
Drosophila melanogaster
TTAAWKR
YMWTTAA
B1H
Mathelier et al.(2014)
MA0170.1
0.614
0.509
C15
M06289_2.00
Drosophila melanogaster
BTTAAWKR
YMWTTAAV
B1H
Zhu et al.(2011)
C15_Cell_FBgn0004863
0.614
0.509
C15
M06290_2.00
Drosophila melanogaster
NWTAAWKR
YMWTTAWN
B1H
Zhu et al.(2011)
C15_SOLEXA_FBgn0004863
0.614
0.509
NOBOX
M02084_2.00
Homo sapiens
NNHDATDRNN
NNYHATHDNN
PBM
Weirauch et al.(2014)
pTH6448
0.613
0.456
ems
M02114_2.00
Drosophila melanogaster
NTAATKRNB
VNYMATTAN
PBM
Weirauch et al.(2014)
pTH5673
0.612
0.544
ems
M03789_2.00
Drosophila melanogaster
BTAATTAN
NTAATTAV
SELEX
Nitta et al.(2015)
ems_1
0.612
0.544
ems
M03790_2.00
Drosophila melanogaster
BTAATTAVBVBTAATKRN
NYMATTAVBVBTAATTAV
SELEX
Nitta et al.(2015)
ems_2
0.612
0.544
ems
M03791_2.00
Drosophila melanogaster
BTAATKRN
NYMATTAV
SELEX
Nitta et al.(2015)
ems_3
0.612
0.544
ems
M03792_2.00
Drosophila melanogaster
STAATKRSSSSTAATKRV
BYMATTASSSSYMATTAS
SELEX
Nitta et al.(2015)
ems_4
0.612
0.544
ems
M06484_2.00
Drosophila melanogaster
HTAATKR
YMATTAD
B1H
Mathelier et al.(2014)
MA0219.1
0.612
0.544
ems
M06233_2.00
Drosophila melanogaster
WHTAATKR
YMATTADW
B1H
Zhu et al.(2011)
Ems_Cell_FBgn0000576
0.612
0.544
ems
M06234_2.00
Drosophila melanogaster
TSTMATHM
KDATKASA
B1H
Zhu et al.(2011)
ems_FlyReg_FBgn0000576
0.612
0.544
ems
M06235_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Zhu et al.(2011)
Ems_SOLEXA_FBgn0000576
0.612
0.544
ems
M09676_2.00
Drosophila melanogaster
WTWATGA
TCATWAW
Misc
Kulakovskiy et al.(2009)
ems
0.612
0.544
Bsx
M00516_2.00
Mus musculus
NTAAYBDNN
NNHVRTTAN
PBM
Berger et al.(2008)
Bsx_3483
0.611
0.579
bsh
M02113_2.00
Drosophila melanogaster
NNTAAYBDNN
NNHVRTTANN
PBM
Weirauch et al.(2014)
pTH6569
0.611
0.579
BSX
M03235_2.00
Homo sapiens
NTAATBRN
NYVATTAN
SELEX
Jolma et al.(2013)
BSX_1
0.611
0.579
bsh
M03786_2.00
Drosophila melanogaster
TAATYTAATTA
TAATTARATTA
SELEX
Nitta et al.(2015)
bsh_1
0.611
0.579
bsh
M03787_2.00
Drosophila melanogaster
TAATTRVWTAATKR
YMATTAWBYAATTA
SELEX
Nitta et al.(2015)
bsh_2
0.611
0.579
bsh
M03788_2.00
Drosophila melanogaster
NTAATBRN
NYVATTAN
SELEX
Nitta et al.(2015)
bsh_3
0.611
0.579
BSX
M05377_2.00
Homo sapiens
NTAAYGHB
VDCRTTAN
SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_1
0.611
0.579
BSX
M05378_2.00
Homo sapiens
BTAATBRV
BYVATTAV
SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_2
0.611
0.579
bsh
M06483_2.00
Drosophila melanogaster
YTAATBR
YVATTAR
B1H
Mathelier et al.(2014)
MA0214.1
0.611
0.579
bsh
M06231_2.00
Drosophila melanogaster
HYTAATBRV
BYVATTARD
B1H
Zhu et al.(2011)
Bsh_Cell_FBgn0000529
0.611
0.579
bsh
M06232_2.00
Drosophila melanogaster
NTAATKR
YMATTAN
B1H
Zhu et al.(2011)
Bsh_SOLEXA_FBgn0000529
0.611
0.579
BSX
M05379_2.00
Homo sapiens
NTAAYGHB
VDCRTTAN
SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_1
0.611
0.579
BSX
M05380_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_2
0.611
0.579
ventx1.1.L
M02234_2.00
Xenopus laevis
NNNNVBNNNN
NNNNVBNNNN
PBM
Weirauch et al.(2014)
pTH6162
0.611
0.509
ventx1.2.S
M10805_2.00
Xenopus laevis
RSRMAAATWBBVS
SBBBWATTTKYSY
Transfac
Matys et al.(2006)
V$XVENT1_01
0.611
0.509
Emx2
M00495_2.00
Mus musculus
NTAATDDNN
NNHHATTAN
PBM
Berger et al.(2008)
Emx2_3420
0.610
0.544
EMX2
M03210_2.00
Homo sapiens
NBTAATTANN
NNTAATTAVN
SELEX
Jolma et al.(2013)
EMX2_1
0.610
0.544
EMX2
M03211_2.00
Homo sapiens
YMATTARBTAATKR
YMATTAVYTAATKR
SELEX
Jolma et al.(2013)
EMX2_2
0.610
0.544
E5
M03814_2.00
Drosophila melanogaster
STAATKNN
NNMATTAS
SELEX
Nitta et al.(2015)
E5_1
0.610
0.544
EMX2
M05281_2.00
Homo sapiens
YTAATKAB
VTMATTAR
SELEX
Yin et al.(2017)
EMX2_eDBD_HT-SELEX
0.610
0.544
E5
M06507_2.00
Drosophila melanogaster
BTAATKA
TMATTAV
B1H
Mathelier et al.(2014)
MA0189.1
0.610
0.544
E5
M06293_2.00
Drosophila melanogaster
NBTAATKA
TMATTAVN
B1H
Zhu et al.(2011)
E5_Cell_FBgn0008646
0.610
0.544
E5
M06294_2.00
Drosophila melanogaster
NTAATDR
YHATTAN
B1H
Zhu et al.(2011)
E5_SOLEXA_FBgn0008646
0.610
0.544
EMX2
M05282_2.00
Homo sapiens
YTAATKAN
NTMATTAR
SELEX
Yin et al.(2017)
EMX2_eDBD_Methyl-HT-SELEX
0.610
0.544
EMX1
M02088_2.00
Homo sapiens
NNTAATKANN
NNTMATTANN
PBM
Weirauch et al.(2014)
pTH5677
0.610
0.526
EMX1
M03151_2.00
Homo sapiens
NBTAATTRNN
NNYAATTAVN
SELEX
Jolma et al.(2013)
EMX1_1
0.610
0.526
EMX1
M03152_2.00
Homo sapiens
YMATTARYTAATKR
YMATTARYTAATKR
SELEX
Jolma et al.(2013)
EMX1_2
0.610
0.526
EMX1
M05145_2.00
Homo sapiens
BTAATTAN
NTAATTAV
SELEX
Yin et al.(2017)
EMX1_eDBD_HT-SELEX
0.610
0.526
EMX1
M05147_2.00
Homo sapiens
BTAATTAV
BTAATTAV
SELEX
Yin et al.(2017)
EMX1_FL_HT-SELEX
0.610
0.526
EMX1
M05146_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Yin et al.(2017)
EMX1_eDBD_Methyl-HT-SELEX
0.610
0.526
EMX1
M05148_2.00
Homo sapiens
BTAATTAN
NTAATTAV
SELEX
Yin et al.(2017)
EMX1_FL_Methyl-HT-SELEX
0.610
0.526
Q0N4M8_NEMVE
M02166_2.00
Nematostella vectensis
HTAATKAC
GTMATTAD
PBM
Weirauch et al.(2014)
pTH6215
0.608
0.544
NEMVEDRAFT_v1g205636
M02150_2.00
Nematostella vectensis
NTAATTAN
NTAATTAN
PBM
Weirauch et al.(2014)
pTH5491
0.604
0.491
ceh-5
M02179_2.00
Caenorhabditis elegans
NNTAATDDN
NHHATTANN
PBM
Weirauch et al.(2014)
pTH6562
0.603
0.491
Nobox
M00448_2.00
Mus musculus
NHDABDRNN
NNYHVTHDN
PBM
Berger et al.(2008)
Og2x_3719
0.600
0.421
Nobox
M02688_2.00
Mus musculus
TAATTRSB
VSYAATTA
SELEX
Mathelier et al.(2014)
MA0125.1
0.600
0.421
Nobox
M09194_2.00
Mus musculus
HTAATTRVB
VBYAATTAD
Misc
Kulakovskiy et al.(2013)
NOBOX_MOUSE.H11MO.0.C
0.600
0.421
Nobox
M10766_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OG2_01
0.600
0.421
Hoxd3
M00531_2.00
Mus musculus
NTAATNDN
NHNATTAN
PBM
Berger et al.(2008)
Hoxd3_1742
0.599
0.491
Hoxa3
M00172_2.00
Mus musculus
NTAATKRNNN
NNNYMATTAN
PBM
Badis et al.(2009)
Hoxa3_2783
0.599
0.491
Hoxa3
M00532_2.00
Mus musculus
NTAATKRNN
NNYMATTAN
PBM
Berger et al.(2008)
Hoxa3_2783
0.599
0.491
Hoxd3
M03287_2.00
Mus musculus
NNTAATKRNN
NNYMATTANN
SELEX
Jolma et al.(2013)
Hoxd3_1
0.599
0.491
HOXD3
M05101_2.00
Homo sapiens
CTAATTAS
STAATTAG
SELEX
Yin et al.(2017)
HOXD3_FL_HT-SELEX
0.599
0.491
HOXA3
M10651_2.00
Homo sapiens
SVTWNDDKB
VMHHNWABS
Transfac
Matys et al.(2006)
V$HOXA3_01
0.599
0.491
HOXD3
M05102_2.00
Homo sapiens
YTAAYGAY
RTCRTTAR
SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_1
0.599
0.491
HOXD3
M05103_2.00
Homo sapiens
CTAATKAC
GTMATTAG
SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_2
0.599
0.491
Hoxb3
M00504_2.00
Mus musculus
NTAATKRNN
NNYMATTAN
PBM
Berger et al.(2008)
Hoxb3_1720
0.599
0.474
HOXB3
M03126_2.00
Homo sapiens
NBTAATKRNN
NNYMATTAVN
SELEX
Jolma et al.(2013)
HOXB3_1
0.599
0.474
Gsx2
M00469_2.00
Mus musculus
NTAATDDNN
NNHHATTAN
PBM
Berger et al.(2008)
Gsh2_3990
0.599
0.526
GSX1
M03205_2.00
Homo sapiens
NNTAATKRNN
NNYMATTANN
SELEX
Jolma et al.(2013)
GSX1_1
0.599
0.526
GSX2
M03227_2.00
Homo sapiens
NNTAATKRNN
NNYMATTANN
SELEX
Jolma et al.(2013)
GSX2_1
0.599
0.526
GSX1
M05271_2.00
Homo sapiens
NYMATNRN
NYNATKRN
SELEX
Yin et al.(2017)
GSX1_eDBD_HT-SELEX
0.599
0.526
GSX2
M05329_2.00
Homo sapiens
HTAATKRS
SYMATTAD
SELEX
Yin et al.(2017)
GSX2_eDBD_HT-SELEX
0.599
0.526
GSX1
M05272_2.00
Homo sapiens
NTAAYGAB
VTCRTTAN
SELEX
Yin et al.(2017)
GSX1_eDBD_Methyl-HT-SELEX
0.599
0.526
GSX2
M05330_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
GSX2_eDBD_Methyl-HT-SELEX
0.599
0.526
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EKC32082
Homeodomain
105
161
KKTRTVFSRHQIFYLESAFDAKRYLSSTERSEIASTLNLTETQVKVWFQNRRNKWKS
Links
Other
Homeodomain
family TFs
Other
Crassostrea gigas
TFs
2956 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy