CGI_10013448 (Crassostrea gigas)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 CGI_10013448 T205835_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hmx1
M00524_2.00
Mus musculus
NHDAKYRNNN

NNNYRMTHDN
PBM
Berger et al.(2008)
Hmx1_3423
0.759 0.754
HMX1
M03243_2.00
Homo sapiens
NNTTAAKTGNY

RNCAMTTAANN
SELEX
Jolma et al.(2013)
HMX1_1
0.759 0.754
HMX3
M03233_2.00
Homo sapiens
NNNTAAKTGNN

NNCAMTTANNN
SELEX
Jolma et al.(2013)
HMX3_1
0.759 0.754
Hmx
M03882_2.00
Drosophila melanogaster
NYRAKYGN

NCRMTYRN
SELEX
Nitta et al.(2015)
Hmx_1
0.759 0.754
HMX1
M05392_2.00
Homo sapiens
BNYAAKTGN

NCAMTTRNV
SELEX
Yin et al.(2017)
HMX1_eDBD_HT-SELEX
0.759 0.754
Hmx
M06554_2.00
Drosophila melanogaster
TTAATTG

CAATTAA
B1H
Mathelier et al.(2014)
MA0192.1
0.759 0.754
Hmx
M06386_2.00
Drosophila melanogaster
TTAATTG

CAATTAA
B1H
Zhu et al.(2011)
Hmx_Cell_FBgn0085448
0.759 0.754
Hmx
M06387_2.00
Drosophila melanogaster
TTAATTG

CAATTAA
B1H
Zhu et al.(2011)
Hmx_SOLEXA_FBgn0085448
0.759 0.754
HMX3
M10754_2.00
Homo sapiens
CAAGTGCGTG

CACGCACTTG
Transfac
Matys et al.(2006)
V$HMX1_01
0.759 0.754
HMX1
M05393_2.00
Homo sapiens
VNYAAKTGB

VCAMTTRNB
SELEX
Yin et al.(2017)
HMX1_eDBD_Methyl-HT-SELEX
0.759 0.754
Hmx2
M00507_2.00
Mus musculus
NHRANYGNNN

NNNCRNTYDN
PBM
Berger et al.(2008)
Hmx2_3424
0.757 0.754
HMX2
M03234_2.00
Homo sapiens
NNTTAAKTGNN

NNCAMTTAANN
SELEX
Jolma et al.(2013)
HMX2_1
0.757 0.754
HMX2
M05373_2.00
Homo sapiens
GNHRAKYGS

SCRMTYDNC
SELEX
Yin et al.(2017)
HMX2_eDBD_HT-SELEX
0.757 0.754
HMX2
M05375_2.00
Homo sapiens
NTTAAKTGNN

NNCAMTTAAN
SELEX
Yin et al.(2017)
HMX2_FL_HT-SELEX
0.757 0.754
HMX2
M05374_2.00
Homo sapiens
NNTAAKTGN

NCAMTTANN
SELEX
Yin et al.(2017)
HMX2_eDBD_Methyl-HT-SELEX
0.757 0.754
HMX2
M05376_2.00
Homo sapiens
NTTAAKTGNN

NNCAMTTAAN
SELEX
Yin et al.(2017)
HMX2_FL_Methyl-HT-SELEX
0.757 0.754
Hmx3_CONSTRUCT
M00537_2.00
PBM CONSTRUCTS
NHDADYRNN

NNYRHTHDN
PBM
Berger et al.(2008)
Hmx3_3490
0.746 0.737
Dfd
M03784_2.00
Drosophila melanogaster
VNTAAYKRBN

NVYMRTTANB
SELEX
Nitta et al.(2015)
Dfd_1
0.679 0.561
Dfd
M03785_2.00
Drosophila melanogaster
VYTAATKAYN

NRTMATTARB
SELEX
Nitta et al.(2015)
Dfd_2
0.679 0.561
Dfd
M06481_2.00
Drosophila melanogaster
YTAATGA

TCATTAR
B1H
Mathelier et al.(2014)
MA0186.1
0.679 0.561
Dfd
M06226_2.00
Drosophila melanogaster
VYTAATGA

TCATTAAB
B1H
Zhu et al.(2011)
Dfd_Cell_FBgn0000439
0.679 0.561
Dfd
M06227_2.00
Drosophila melanogaster
TTAATKRY

RYMATTAA
B1H
Zhu et al.(2011)
Dfd_FlyReg_FBgn0000439
0.679 0.561
Dfd
M06228_2.00
Drosophila melanogaster
NBTAATKR

YMATTAVN
B1H
Zhu et al.(2011)
Dfd_SOLEXA_FBgn0000439
0.679 0.561
Dfd
M09675_2.00
Drosophila melanogaster
TTAATKRB

VYMATTAA
Misc
Kulakovskiy et al.(2009)
Dfd
0.679 0.561
Dfd
M10784_2.00
Drosophila melanogaster
NNNNRKTAATNNNNNN

NNNNNNATTAMYNNNN
Transfac
Matys et al.(2006)
I$DFD_01
0.679 0.561
MEOX2
M03103_2.00
Homo sapiens
NNTRATKASN

NSTMATYANN
SELEX
Jolma et al.(2013)
MEOX2_1
0.677 0.561
MEOX2
M03104_2.00
Homo sapiens
NTAATTANVNTAATTAV

BTAATTANBNTAATTAN
SELEX
Jolma et al.(2013)
MEOX2_2
0.677 0.561
MEOX2
M03105_2.00
Homo sapiens
HTAATGATGATKAN

NTMATCATCATTAD
SELEX
Jolma et al.(2013)
MEOX2_3
0.677 0.561
Meox2
M03271_2.00
Mus musculus
NTAATKAN

NTMATTAN
SELEX
Jolma et al.(2013)
Meox2_1
0.677 0.561
MEOX2
M04988_2.00
Homo sapiens
NTDAYGHB

VDCRTHAN
SELEX
Yin et al.(2017)
MEOX2_FL_HT-SELEX_1
0.677 0.561
MEOX2
M04989_2.00
Homo sapiens
NTVATBRV

BYVATBAN
SELEX
Yin et al.(2017)
MEOX2_FL_HT-SELEX_2
0.677 0.561
Meox2
M10771_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEOX2_05
0.677 0.561
MEOX2
M04990_2.00
Homo sapiens
NTAAYGHB

VDCRTTAN
SELEX
Yin et al.(2017)
MEOX2_FL_Methyl-HT-SELEX_1
0.677 0.561
MEOX2
M04991_2.00
Homo sapiens
NTVATKRN

NYMATBAN
SELEX
Yin et al.(2017)
MEOX2_FL_Methyl-HT-SELEX_2
0.677 0.561
NK7.1
M03847_2.00
Drosophila melanogaster
VTTAAAYGDTD

HAHCRTTTAAB
SELEX
Nitta et al.(2015)
NK7.1_1
0.667 0.614
NK7.1
M03848_2.00
Drosophila melanogaster
NSTTAATTGVY

RBCAATTAASN
SELEX
Nitta et al.(2015)
NK7.1_2
0.667 0.614
NK7.1
M06524_2.00
Drosophila melanogaster
TTAATDR

YHATTAA
B1H
Mathelier et al.(2014)
MA0196.1
0.667 0.614
NK7.1
M06323_2.00
Drosophila melanogaster
NTTAATDR

YHATTAAN
B1H
Zhu et al.(2011)
NK7.1_Cell_FBgn0024321
0.667 0.614
NK7.1
M06324_2.00
Drosophila melanogaster
YTAATDR

YHATTAR
B1H
Zhu et al.(2011)
NK7.1_SOLEXA_FBgn0024321
0.667 0.614
TLX3
M05233_2.00
Homo sapiens
NAATKGNNNNNNNNNNNNNCAATTN

NAATTGNNNNNNNNNNNNNCMATTN
SELEX
Yin et al.(2017)
TLX3_eDBD_HT-SELEX
0.659 0.544
TLX3
M05235_2.00
Homo sapiens
NAATTGNNNNNHNNNNCAATTN

NAATTGNNNNDNNNNNCAATTN
SELEX
Yin et al.(2017)
TLX3_FL_HT-SELEX
0.659 0.544
TLX3
M05234_2.00
Homo sapiens
NAATTGNNNNNNNNNNDCAATTD

HAATTGHNNNNNNNNNNCAATTN
SELEX
Yin et al.(2017)
TLX3_eDBD_Methyl-HT-SELEX
0.659 0.544
TLX3
M05236_2.00
Homo sapiens
HAATTRNNNNNNNNNYHATTV

BAATDRNNNNNNNNNYAATTD
SELEX
Yin et al.(2017)
TLX3_FL_Methyl-HT-SELEX
0.659 0.544
lms
M03863_2.00
Drosophila melanogaster
BTAATTRV

BYAATTAV
SELEX
Nitta et al.(2015)
CG13424_1
0.653 0.544
lms
M03864_2.00
Drosophila melanogaster
HTWATTRDWTDATTRR

YYAATHAWHYAATWAD
SELEX
Nitta et al.(2015)
lms_1
0.653 0.544
lms
M06536_2.00
Drosophila melanogaster
YTAATKR

YMATTAR
B1H
Mathelier et al.(2014)
MA0175.1
0.653 0.544
lms
M06347_2.00
Drosophila melanogaster
NYTAATKR

YMATTARN
B1H
Zhu et al.(2011)
CG13424_Cell_FBgn0034520
0.653 0.544
lms
M06348_2.00
Drosophila melanogaster
NNHTAATDRN

NYHATTADNN
B1H
Zhu et al.(2011)
CG13424_SOLEXA_2_FBgn0034520
0.653 0.544
lms
M06349_2.00
Drosophila melanogaster
YTAATKR

YMATTAR
B1H
Zhu et al.(2011)
CG13424_SOLEXA_FBgn0034520
0.653 0.544
Q24780_9CNID
M02205_2.00
Eleutheria dichotoma
NNYTAATTAMN

NKTAATTARNN
PBM
Weirauch et al.(2014)
pTH6308
0.648 0.544
CG18599
M06539_2.00
Drosophila melanogaster
HTAATKA

TMATTAD
B1H
Mathelier et al.(2014)
MA0177.1
0.638 0.509
CG18599
M06354_2.00
Drosophila melanogaster
HTAATKA

TMATTAD
B1H
Zhu et al.(2011)
CG18599_Cell_FBgn0038592
0.638 0.509
CG18599
M06355_2.00
Drosophila melanogaster
YTAATKA

TMATTAR
B1H
Zhu et al.(2011)
CG18599_SOLEXA_FBgn0038592
0.638 0.509
repo
M03826_2.00
Drosophila melanogaster
VTTAATTARB

VYTAATTAAB
SELEX
Nitta et al.(2015)
repo_1
0.635 0.509
repo
M03827_2.00
Drosophila melanogaster
VKYAATTRRN

NYYAATTRMB
SELEX
Nitta et al.(2015)
repo_2
0.635 0.509
repo
M03828_2.00
Drosophila melanogaster
VBYAATTRVNNBYAATTRVB

VBYAATTRVNNBYAATTRVB
SELEX
Nitta et al.(2015)
repo_3
0.635 0.509
repo
M06511_2.00
Drosophila melanogaster
TTAATTA

TAATTAA
B1H
Mathelier et al.(2014)
MA0240.1
0.635 0.509
repo
M06301_2.00
Drosophila melanogaster
DTTAATTA

TAATTAAH
B1H
Zhu et al.(2011)
Repo_Cell_FBgn0011701
0.635 0.509
repo
M06302_2.00
Drosophila melanogaster
YTAATTR

YAATTAR
B1H
Zhu et al.(2011)
Repo_SOLEXA_FBgn0011701
0.635 0.509
Hoxa4
M00383_2.00
Mus musculus
NTAATBDNN

NNHVATTAN
PBM
Berger et al.(2008)
Hoxa4_3426
0.634 0.544
HOXA4
M05381_2.00
Homo sapiens
NTAATKRY

RYMATTAN
SELEX
Yin et al.(2017)
HOXA4_eDBD_HT-SELEX
0.634 0.544
HOXA4
M10755_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA4_Q2
0.634 0.544
HOXA4
M05382_2.00
Homo sapiens
NTAAYGAY

RTCRTTAN
SELEX
Yin et al.(2017)
HOXA4_eDBD_Methyl-HT-SELEX
0.634 0.544
HOXD4
M05273_2.00
Homo sapiens
NTMATKRV

BYMATKAN
SELEX
Yin et al.(2017)
HOXD4_eDBD_HT-SELEX
0.634 0.526
HOXD4
M05276_2.00
Homo sapiens
NTAATKRB

VYMATTAN
SELEX
Yin et al.(2017)
HOXD4_FL_HT-SELEX
0.634 0.526
HOXD4
M05274_2.00
Homo sapiens
NTMATKRN

NYMATKAN
SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_1
0.634 0.526
HOXD4
M05275_2.00
Homo sapiens
NTAAYGAY

RTCRTTAN
SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_2
0.634 0.526
HOXD4
M05277_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_1
0.634 0.526
HOXD4
M05278_2.00
Homo sapiens
NTAAYGAY

RTCRTTAN
SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_2
0.634 0.526
Meox1
M00384_2.00
Mus musculus
NTRATKRNN

NNYMATYAN
PBM
Berger et al.(2008)
Meox1_2310
0.632 0.526
MEOX1
M03077_2.00
Homo sapiens
NNTAATTASN

NSTAATTANN
SELEX
Jolma et al.(2013)
MEOX1_1
0.632 0.526
MEOX1
M04901_2.00
Homo sapiens
NTDAYGHB

VDCRTHAN
SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_1
0.632 0.526
MEOX1
M04902_2.00
Homo sapiens
NTMATKRN

NYMATKAN
SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_2
0.632 0.526
MEOX1
M04903_2.00
Homo sapiens
NTAAYGWB

VWCRTTAN
SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_1
0.632 0.526
MEOX1
M04904_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_2
0.632 0.526
Evx2
M00393_2.00
Mus musculus
NNTAAYNN

NNRTTANN
PBM
Berger et al.(2008)
Evx2_2645
0.629 0.509
Evx1
M00395_2.00
Mus musculus
NTAATBDNN

NNHVATTAN
PBM
Berger et al.(2008)
Evx1_3952
0.629 0.509
vab-7
M02186_2.00
Caenorhabditis elegans
KTAATTAK

MTAATTAM
PBM
Weirauch et al.(2014)
pTH6104
0.629 0.509
EVX1
M03102_2.00
Homo sapiens
NNTAATBRBN

NVYVATTANN
SELEX
Jolma et al.(2013)
EVX1_1
0.629 0.509
EVX2
M03215_2.00
Homo sapiens
NNTAATBRBN

NVYVATTANN
SELEX
Jolma et al.(2013)
EVX2_1
0.629 0.509
EVX1
M04985_2.00
Homo sapiens
VTAATKAB

VTMATTAB
SELEX
Yin et al.(2017)
EVX1_eDBD_HT-SELEX
0.629 0.509
EVX2
M05295_2.00
Homo sapiens
NTAATKAN

NTMATTAN
SELEX
Yin et al.(2017)
EVX2_eDBD_HT-SELEX
0.629 0.509
EVX2
M09158_2.00
Homo sapiens
NBTTTATKRCHNN

NNDGYMATAAAVN
Misc
Kulakovskiy et al.(2013)
EVX2_HUMAN.H11MO.0.A
0.629 0.509
Evx1
M09174_2.00
Mus musculus
WGATTTATDRBHN

NDVYHATAAATCW
Misc
Kulakovskiy et al.(2013)
EVX1_MOUSE.H11MO.0.C
0.629 0.509
Evx2
M09173_2.00
Mus musculus
BTTTATKRCHBN

NVDGYMATAAAV
Misc
Kulakovskiy et al.(2013)
EVX2_MOUSE.H11MO.0.A
0.629 0.509
EVX2
M10736_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EVX2_04
0.629 0.509
EVX1
M04986_2.00
Homo sapiens
NTMATKAN

NTMATKAN
SELEX
Yin et al.(2017)
EVX1_eDBD_Methyl-HT-SELEX_1
0.629 0.509
EVX1
M04987_2.00
Homo sapiens
HTWAYGAB

VTCRTWAD
SELEX
Yin et al.(2017)
EVX1_eDBD_Methyl-HT-SELEX_2
0.629 0.509
EVX2
M05296_2.00
Homo sapiens
NTAATKAN

NTMATTAN
SELEX
Yin et al.(2017)
EVX2_eDBD_Methyl-HT-SELEX_1
0.629 0.509
EVX2
M05297_2.00
Homo sapiens
HTAAYGAB

VTCRTTAD
SELEX
Yin et al.(2017)
EVX2_eDBD_Methyl-HT-SELEX_2
0.629 0.509
Pdx1
M00446_2.00
Mus musculus
NWRAYNNN

NNNRTYWN
PBM
Berger et al.(2008)
Ipf1_3815
0.622 0.509
SPU_026099
M02175_2.00
Strongylocentrotus purpuratus
KTAATTRB

VYAATTAM
PBM
Weirauch et al.(2014)
pTH6140
0.622 0.509
PDX1
M03155_2.00
Homo sapiens
NTAATTRNNNYTAATTRN

NYAATTARNNNYAATTAN
SELEX
Jolma et al.(2013)
PDX1_1
0.622 0.509
PDX1
M03156_2.00
Homo sapiens
BTAATKRN

NYMATTAV
SELEX
Jolma et al.(2013)
PDX1_2
0.622 0.509
PDX1
M05161_2.00
Homo sapiens
YTAATKRB

VYMATTAR
SELEX
Yin et al.(2017)
PDX1_eDBD_HT-SELEX
0.622 0.509
PDX1
M09147_2.00
Homo sapiens
TGATWGATK

MATCWATCA
Misc
Kulakovskiy et al.(2013)
PDX1_HUMAN.H11MO.0.A
0.622 0.509
Pdx1
M09192_2.00
Mus musculus
VYTAATGRB

VYCATTARB
Misc
Kulakovskiy et al.(2013)
PDX1_MOUSE.H11MO.0.B
0.622 0.509
Pdx1
M09571_2.00
Mus musculus
TGATTRATKR

YMATYAATCA
Misc
Heinz et al.(2010)
Islet-Pdx1_SRA008281
0.622 0.509
PDX1
M10699_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_01
0.622 0.509
PDX1
M10700_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_02
0.622 0.509
PDX1
M10701_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_03
0.622 0.509
PDX1
M10702_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_04
0.622 0.509
PDX1
M10703_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_05
0.622 0.509
PDX1
M10704_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q4_01
0.622 0.509
PDX1
M10705_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q4
0.622 0.509
PDX1
M10706_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q5_01
0.622 0.509
PDX1
M10707_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q5
0.622 0.509
PDX1
M10708_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q6
0.622 0.509
PDX1
M05162_2.00
Homo sapiens
HTAAYGAB

VTCRTTAD
SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_1
0.622 0.509
PDX1
M05163_2.00
Homo sapiens
YTAATKRB

VYMATTAR
SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_2
0.622 0.509
Scr
M03799_2.00
Drosophila melanogaster
BTAATKRB

VYMATTAV
SELEX
Nitta et al.(2015)
Scr_1
0.622 0.526
Scr
M06496_2.00
Drosophila melanogaster
YTAATKA

TMATTAR
B1H
Mathelier et al.(2014)
MA0203.1
0.622 0.526
Scr
M06266_2.00
Drosophila melanogaster
HVYTAATKA

TMATTARBD
B1H
Zhu et al.(2011)
Scr_Cell_FBgn0003339
0.622 0.526
Scr
M06267_2.00
Drosophila melanogaster
YTAATKR

YMATTAR
B1H
Zhu et al.(2011)
Scr_SOLEXA_FBgn0003339
0.622 0.526
HOXC4
M00330_2.00
Homo sapiens
YTAATTRB

VYAATTAR
PBM
Barrera et al.(2016)
HOXC4_REF
0.622 0.509
Hoxc5
M00422_2.00
Mus musculus
NWRATND

HNATYWN
PBM
Berger et al.(2008)
Hoxc5_2630
0.622 0.509
Hoxa5
M00478_2.00
Mus musculus
NTAATNDNN

NNHNATTAN
PBM
Berger et al.(2008)
Hoxa5_3415
0.622 0.509
Hoxb4
M00479_2.00
Mus musculus
NTAATNDNN

NNHNATTAN
PBM
Berger et al.(2008)
Hoxb4_2627
0.622 0.509
Hoxb5
M00480_2.00
Mus musculus
NWDWTNNNN

NNNNAWHWN
PBM
Berger et al.(2008)
Hoxb5_3122
0.622 0.509
Hoxc4
M00530_2.00
Mus musculus
NWAATNDNN

NNHNATTWN
PBM
Berger et al.(2008)
Hoxc4_3491
0.622 0.509
HOXB5
M03125_2.00
Homo sapiens
NNKAATKRNN

NNYMATTMNN
SELEX
Jolma et al.(2013)
HOXB5_1
0.622 0.509
HOXA5
M04968_2.00
Homo sapiens
STAATKRS

SYMATTAS
SELEX
Yin et al.(2017)
HOXA5_eDBD_HT-SELEX
0.622 0.509
HOXA5
M04971_2.00
Homo sapiens
NTMATKRB

VYMATKAN
SELEX
Yin et al.(2017)
HOXA5_FL_HT-SELEX
0.622 0.509
HOXB4
M05343_2.00
Homo sapiens
YTAATKAY

RTMATTAR
SELEX
Yin et al.(2017)
HOXB4_FL_HT-SELEX
0.622 0.509
HOXB5
M05051_2.00
Homo sapiens
NTAATKRV

BYMATTAN
SELEX
Yin et al.(2017)
HOXB5_eDBD_HT-SELEX
0.622 0.509
HOXB5
M05054_2.00
Homo sapiens
STMATKAB

VTMATKAS
SELEX
Yin et al.(2017)
HOXB5_FL_HT-SELEX
0.622 0.509
HOXC4
M05385_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
HOXC4_FL_HT-SELEX
0.622 0.509
HOXB4
M09162_2.00
Homo sapiens
YTAATKRS

SYMATTAR
Misc
Kulakovskiy et al.(2013)
HXB4_HUMAN.H11MO.0.B
0.622 0.509
Hoxb4
M09204_2.00
Mus musculus
YTAATKRS

SYMATTAR
Misc
Kulakovskiy et al.(2013)
HXB4_MOUSE.H11MO.0.A
0.622 0.509
Hoxb4
M09576_2.00
Mus musculus
TGATDRATKRSN

NSYMATYHATCA
Misc
Heinz et al.(2010)
ES-Hoxb4_GSE34014
0.622 0.509
HOXA5
M10652_2.00
Homo sapiens
NGRDBKBDHNBAVTAATKRRGRDVDDDGSR

YSCHHHBHYCYYMATTABTVNDHVMVHYCN
Transfac
Matys et al.(2006)
V$HOX13_01
0.622 0.509
HOXA5
M08457_2.00
Homo sapiens
CDBWAATK

MATTWVHG
COMPILED
Mathelier et al.(2014)
MA0158.1
0.622 0.509
HOXC4
M00328_2.00
Homo sapiens
YTAATTAB

VTAATTAR
PBM
Barrera et al.(2016)
HOXC4_N178S
0.622 0.509
HOXC4
M00329_2.00
Homo sapiens
NTAATKRNN

NNYMATTAN
PBM
Barrera et al.(2016)
HOXC4_R158L
0.622 0.509
HOXA5
M04969_2.00
Homo sapiens
BTAATKRV

BYMATTAV
SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_1
0.622 0.509
HOXA5
M04970_2.00
Homo sapiens
NTAAYGAY

RTCRTTAN
SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_2
0.622 0.509
HOXA5
M04972_2.00
Homo sapiens
NTMATKRN

NYMATKAN
SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_1
0.622 0.509
HOXA5
M04973_2.00
Homo sapiens
NTAAYGAY

RTCRTTAN
SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_2
0.622 0.509
HOXB4
M05344_2.00
Homo sapiens
HTAAYGAY

RTCRTTAD
SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_1
0.622 0.509
HOXB4
M05345_2.00
Homo sapiens
HTAAYKAB

VTMRTTAD
SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_2
0.622 0.509
HOXB5
M05052_2.00
Homo sapiens
NTMATKRN

NYMATKAN
SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_1
0.622 0.509
HOXB5
M05053_2.00
Homo sapiens
NTAAYGAY

RTCRTTAN
SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_2
0.622 0.509
HOXB5
M05055_2.00
Homo sapiens
NTMATKAB

VTMATKAN
SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_1
0.622 0.509
HOXB5
M05056_2.00
Homo sapiens
HTAAYGAY

RTCRTTAD
SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_2
0.622 0.509
HOXC4
M05386_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_1
0.622 0.509
HOXC4
M05387_2.00
Homo sapiens
NTAAYGAY

RTCRTTAN
SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_2
0.622 0.509
VAX2
M00284_2.00
Homo sapiens
NNTAATND

HNATTANN
PBM
Barrera et al.(2016)
VAX2_REF
0.620 0.544
Vax1
M00398_2.00
Mus musculus
NTAATNDNN

NNHNATTAN
PBM
Berger et al.(2008)
Vax1_3499
0.620 0.544
Vax2
M00464_2.00
Mus musculus
NTAATDDNN

NNHHATTAN
PBM
Berger et al.(2008)
Vax2_3500
0.620 0.544
VAX2
M03119_2.00
Homo sapiens
YTAATKAN

NTMATTAR
SELEX
Jolma et al.(2013)
VAX2_1
0.620 0.544
VAX2
M05030_2.00
Homo sapiens
BTAATTRV

BYAATTAV
SELEX
Yin et al.(2017)
VAX2_FL_HT-SELEX
0.620 0.544
Vax1
M10764_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VAX1_04
0.620 0.544
VAX2
M05031_2.00
Homo sapiens
BTAATTRV

BYAATTAV
SELEX
Yin et al.(2017)
VAX2_FL_Methyl-HT-SELEX
0.620 0.544
btn
M03832_2.00
Drosophila melanogaster
NNTAATKANB

VNTMATTANN
SELEX
Nitta et al.(2015)
btn_1
0.616 0.544
btn
M03833_2.00
Drosophila melanogaster
VNTAATKABN

NVTMATTANB
SELEX
Nitta et al.(2015)
btn_2
0.616 0.544
btn
M06515_2.00
Drosophila melanogaster
DTAATKA

TMATTAH
B1H
Mathelier et al.(2014)
MA0215.1
0.616 0.544
btn
M06307_2.00
Drosophila melanogaster
NDTAATKA

TMATTAHN
B1H
Zhu et al.(2011)
Btn_Cell_FBgn0014949
0.616 0.544
btn
M06308_2.00
Drosophila melanogaster
HTAATKA

TMATTAD
B1H
Zhu et al.(2011)
Btn_SOLEXA_FBgn0014949
0.616 0.544
VAX2
M00283_2.00
Homo sapiens
NNTAAWNDNN

NNHNWTTANN
PBM
Barrera et al.(2016)
VAX2_L139M
0.614 0.526
TLX2
M02087_2.00
Homo sapiens
NYRDNNNNNN

NNNNNNHYRN
PBM
Weirauch et al.(2014)
pTH6482
0.614 0.526
Tlx2
M00526_2.00
Mus musculus
WTTAAWTA

TAWTTAAW
PBM
Berger et al.(2008)
Tlx2_3498
0.614 0.526
TLX2
M05020_2.00
Homo sapiens
BTAATTRN

NYAATTAV
SELEX
Yin et al.(2017)
TLX2_eDBD_HT-SELEX
0.614 0.526
TLX2
M10672_2.00
Homo sapiens
BNGTAAKDNB

VNHMTTACNV
Transfac
Matys et al.(2006)
V$NCX_01
0.614 0.526
TLX2
M05021_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
TLX2_eDBD_Methyl-HT-SELEX
0.614 0.526
C15
M06505_2.00
Drosophila melanogaster
TTAAWKR

YMWTTAA
B1H
Mathelier et al.(2014)
MA0170.1
0.614 0.509
C15
M06289_2.00
Drosophila melanogaster
BTTAAWKR

YMWTTAAV
B1H
Zhu et al.(2011)
C15_Cell_FBgn0004863
0.614 0.509
C15
M06290_2.00
Drosophila melanogaster
NWTAAWKR

YMWTTAWN
B1H
Zhu et al.(2011)
C15_SOLEXA_FBgn0004863
0.614 0.509
NOBOX
M02084_2.00
Homo sapiens
NNHDATDRNN

NNYHATHDNN
PBM
Weirauch et al.(2014)
pTH6448
0.613 0.456
ems
M02114_2.00
Drosophila melanogaster
NTAATKRNB

VNYMATTAN
PBM
Weirauch et al.(2014)
pTH5673
0.612 0.544
ems
M03789_2.00
Drosophila melanogaster
BTAATTAN

NTAATTAV
SELEX
Nitta et al.(2015)
ems_1
0.612 0.544
ems
M03790_2.00
Drosophila melanogaster
BTAATTAVBVBTAATKRN

NYMATTAVBVBTAATTAV
SELEX
Nitta et al.(2015)
ems_2
0.612 0.544
ems
M03791_2.00
Drosophila melanogaster
BTAATKRN

NYMATTAV
SELEX
Nitta et al.(2015)
ems_3
0.612 0.544
ems
M03792_2.00
Drosophila melanogaster
STAATKRSSSSTAATKRV

BYMATTASSSSYMATTAS
SELEX
Nitta et al.(2015)
ems_4
0.612 0.544
ems
M06484_2.00
Drosophila melanogaster
HTAATKR

YMATTAD
B1H
Mathelier et al.(2014)
MA0219.1
0.612 0.544
ems
M06233_2.00
Drosophila melanogaster
WHTAATKR

YMATTADW
B1H
Zhu et al.(2011)
Ems_Cell_FBgn0000576
0.612 0.544
ems
M06234_2.00
Drosophila melanogaster
TSTMATHM

KDATKASA
B1H
Zhu et al.(2011)
ems_FlyReg_FBgn0000576
0.612 0.544
ems
M06235_2.00
Drosophila melanogaster
YTAATKA

TMATTAR
B1H
Zhu et al.(2011)
Ems_SOLEXA_FBgn0000576
0.612 0.544
ems
M09676_2.00
Drosophila melanogaster
WTWATGA

TCATWAW
Misc
Kulakovskiy et al.(2009)
ems
0.612 0.544
Bsx
M00516_2.00
Mus musculus
NTAAYBDNN

NNHVRTTAN
PBM
Berger et al.(2008)
Bsx_3483
0.611 0.579
bsh
M02113_2.00
Drosophila melanogaster
NNTAAYBDNN

NNHVRTTANN
PBM
Weirauch et al.(2014)
pTH6569
0.611 0.579
BSX
M03235_2.00
Homo sapiens
NTAATBRN

NYVATTAN
SELEX
Jolma et al.(2013)
BSX_1
0.611 0.579
bsh
M03786_2.00
Drosophila melanogaster
TAATYTAATTA

TAATTARATTA
SELEX
Nitta et al.(2015)
bsh_1
0.611 0.579
bsh
M03787_2.00
Drosophila melanogaster
TAATTRVWTAATKR

YMATTAWBYAATTA
SELEX
Nitta et al.(2015)
bsh_2
0.611 0.579
bsh
M03788_2.00
Drosophila melanogaster
NTAATBRN

NYVATTAN
SELEX
Nitta et al.(2015)
bsh_3
0.611 0.579
BSX
M05377_2.00
Homo sapiens
NTAAYGHB

VDCRTTAN
SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_1
0.611 0.579
BSX
M05378_2.00
Homo sapiens
BTAATBRV

BYVATTAV
SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_2
0.611 0.579
bsh
M06483_2.00
Drosophila melanogaster
YTAATBR

YVATTAR
B1H
Mathelier et al.(2014)
MA0214.1
0.611 0.579
bsh
M06231_2.00
Drosophila melanogaster
HYTAATBRV

BYVATTARD
B1H
Zhu et al.(2011)
Bsh_Cell_FBgn0000529
0.611 0.579
bsh
M06232_2.00
Drosophila melanogaster
NTAATKR

YMATTAN
B1H
Zhu et al.(2011)
Bsh_SOLEXA_FBgn0000529
0.611 0.579
BSX
M05379_2.00
Homo sapiens
NTAAYGHB

VDCRTTAN
SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_1
0.611 0.579
BSX
M05380_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_2
0.611 0.579
ventx1.1.L
M02234_2.00
Xenopus laevis
NNNNVBNNNN

NNNNVBNNNN
PBM
Weirauch et al.(2014)
pTH6162
0.611 0.509
ventx1.2.S
M10805_2.00
Xenopus laevis
RSRMAAATWBBVS

SBBBWATTTKYSY
Transfac
Matys et al.(2006)
V$XVENT1_01
0.611 0.509
Emx2
M00495_2.00
Mus musculus
NTAATDDNN

NNHHATTAN
PBM
Berger et al.(2008)
Emx2_3420
0.610 0.544
EMX2
M03210_2.00
Homo sapiens
NBTAATTANN

NNTAATTAVN
SELEX
Jolma et al.(2013)
EMX2_1
0.610 0.544
EMX2
M03211_2.00
Homo sapiens
YMATTARBTAATKR

YMATTAVYTAATKR
SELEX
Jolma et al.(2013)
EMX2_2
0.610 0.544
E5
M03814_2.00
Drosophila melanogaster
STAATKNN

NNMATTAS
SELEX
Nitta et al.(2015)
E5_1
0.610 0.544
EMX2
M05281_2.00
Homo sapiens
YTAATKAB

VTMATTAR
SELEX
Yin et al.(2017)
EMX2_eDBD_HT-SELEX
0.610 0.544
E5
M06507_2.00
Drosophila melanogaster
BTAATKA

TMATTAV
B1H
Mathelier et al.(2014)
MA0189.1
0.610 0.544
E5
M06293_2.00
Drosophila melanogaster
NBTAATKA

TMATTAVN
B1H
Zhu et al.(2011)
E5_Cell_FBgn0008646
0.610 0.544
E5
M06294_2.00
Drosophila melanogaster
NTAATDR

YHATTAN
B1H
Zhu et al.(2011)
E5_SOLEXA_FBgn0008646
0.610 0.544
EMX2
M05282_2.00
Homo sapiens
YTAATKAN

NTMATTAR
SELEX
Yin et al.(2017)
EMX2_eDBD_Methyl-HT-SELEX
0.610 0.544
EMX1
M02088_2.00
Homo sapiens
NNTAATKANN

NNTMATTANN
PBM
Weirauch et al.(2014)
pTH5677
0.610 0.526
EMX1
M03151_2.00
Homo sapiens
NBTAATTRNN

NNYAATTAVN
SELEX
Jolma et al.(2013)
EMX1_1
0.610 0.526
EMX1
M03152_2.00
Homo sapiens
YMATTARYTAATKR

YMATTARYTAATKR
SELEX
Jolma et al.(2013)
EMX1_2
0.610 0.526
EMX1
M05145_2.00
Homo sapiens
BTAATTAN

NTAATTAV
SELEX
Yin et al.(2017)
EMX1_eDBD_HT-SELEX
0.610 0.526
EMX1
M05147_2.00
Homo sapiens
BTAATTAV

BTAATTAV
SELEX
Yin et al.(2017)
EMX1_FL_HT-SELEX
0.610 0.526
EMX1
M05146_2.00
Homo sapiens
BTAATTRN

NYAATTAV
SELEX
Yin et al.(2017)
EMX1_eDBD_Methyl-HT-SELEX
0.610 0.526
EMX1
M05148_2.00
Homo sapiens
BTAATTAN

NTAATTAV
SELEX
Yin et al.(2017)
EMX1_FL_Methyl-HT-SELEX
0.610 0.526
Q0N4M8_NEMVE
M02166_2.00
Nematostella vectensis
HTAATKAC

GTMATTAD
PBM
Weirauch et al.(2014)
pTH6215
0.608 0.544
NEMVEDRAFT_v1g205636
M02150_2.00
Nematostella vectensis
NTAATTAN

NTAATTAN
PBM
Weirauch et al.(2014)
pTH5491
0.604 0.491
ceh-5
M02179_2.00
Caenorhabditis elegans
NNTAATDDN

NHHATTANN
PBM
Weirauch et al.(2014)
pTH6562
0.603 0.491
Nobox
M00448_2.00
Mus musculus
NHDABDRNN

NNYHVTHDN
PBM
Berger et al.(2008)
Og2x_3719
0.600 0.421
Nobox
M02688_2.00
Mus musculus
TAATTRSB

VSYAATTA
SELEX
Mathelier et al.(2014)
MA0125.1
0.600 0.421
Nobox
M09194_2.00
Mus musculus
HTAATTRVB

VBYAATTAD
Misc
Kulakovskiy et al.(2013)
NOBOX_MOUSE.H11MO.0.C
0.600 0.421
Nobox
M10766_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OG2_01
0.600 0.421
Hoxd3
M00531_2.00
Mus musculus
NTAATNDN

NHNATTAN
PBM
Berger et al.(2008)
Hoxd3_1742
0.599 0.491
Hoxa3
M00172_2.00
Mus musculus
NTAATKRNNN

NNNYMATTAN
PBM
Badis et al.(2009)
Hoxa3_2783
0.599 0.491
Hoxa3
M00532_2.00
Mus musculus
NTAATKRNN

NNYMATTAN
PBM
Berger et al.(2008)
Hoxa3_2783
0.599 0.491
Hoxd3
M03287_2.00
Mus musculus
NNTAATKRNN

NNYMATTANN
SELEX
Jolma et al.(2013)
Hoxd3_1
0.599 0.491
HOXD3
M05101_2.00
Homo sapiens
CTAATTAS

STAATTAG
SELEX
Yin et al.(2017)
HOXD3_FL_HT-SELEX
0.599 0.491
HOXA3
M10651_2.00
Homo sapiens
SVTWNDDKB

VMHHNWABS
Transfac
Matys et al.(2006)
V$HOXA3_01
0.599 0.491
HOXD3
M05102_2.00
Homo sapiens
YTAAYGAY

RTCRTTAR
SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_1
0.599 0.491
HOXD3
M05103_2.00
Homo sapiens
CTAATKAC

GTMATTAG
SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_2
0.599 0.491
Hoxb3
M00504_2.00
Mus musculus
NTAATKRNN

NNYMATTAN
PBM
Berger et al.(2008)
Hoxb3_1720
0.599 0.474
HOXB3
M03126_2.00
Homo sapiens
NBTAATKRNN

NNYMATTAVN
SELEX
Jolma et al.(2013)
HOXB3_1
0.599 0.474
Gsx2
M00469_2.00
Mus musculus
NTAATDDNN

NNHHATTAN
PBM
Berger et al.(2008)
Gsh2_3990
0.599 0.526
GSX1
M03205_2.00
Homo sapiens
NNTAATKRNN

NNYMATTANN
SELEX
Jolma et al.(2013)
GSX1_1
0.599 0.526
GSX2
M03227_2.00
Homo sapiens
NNTAATKRNN

NNYMATTANN
SELEX
Jolma et al.(2013)
GSX2_1
0.599 0.526
GSX1
M05271_2.00
Homo sapiens
NYMATNRN

NYNATKRN
SELEX
Yin et al.(2017)
GSX1_eDBD_HT-SELEX
0.599 0.526
GSX2
M05329_2.00
Homo sapiens
HTAATKRS

SYMATTAD
SELEX
Yin et al.(2017)
GSX2_eDBD_HT-SELEX
0.599 0.526
GSX1
M05272_2.00
Homo sapiens
NTAAYGAB

VTCRTTAN
SELEX
Yin et al.(2017)
GSX1_eDBD_Methyl-HT-SELEX
0.599 0.526
GSX2
M05330_2.00
Homo sapiens
HTAAYGAB

VTCRTTAD
SELEX
Yin et al.(2017)
GSX2_eDBD_Methyl-HT-SELEX
0.599 0.526
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC32082 Homeodomain 105 161

Links

Other Homeodomain family TFs
Other Crassostrea gigas TFs

Invalid Input OrderBy

2956 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action