CJA00270 (Caenorhabditis japonica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 CJA00270 T205924_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SIX5
M08208_2.00
Homo sapiens
GARWTGTAGT

ACTACAWYTC
ChIP-seq
Contrino et al.(2012)
Mv121
0.769 0.528
SIX5
M08209_2.00
Homo sapiens
GGAGTTGT

ACAACTCC
ChIP-seq
Contrino et al.(2012)
Mv123
0.769 0.528
SIX5
M10738_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_01
0.769 0.528
SIX5
M10739_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_02
0.769 0.528
Six4
M00461_2.00
Mus musculus
NNKABMHNN

NNDKVTMNN
PBM
Berger et al.(2008)
Six4_2860
0.768 0.528
SIX4
M04939_2.00
Homo sapiens
NVYGATACVB

VBGTATCRBN
SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX
0.768 0.528
Six4
M09198_2.00
Mus musculus
DGDAABHNSASNNN

NNNSTSNDVTTHCH
Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C
0.768 0.528
SIX4
M10646_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX4_Q3
0.768 0.528
SIX4
M04940_2.00
Homo sapiens
NBGTAWCRHN

NDYGWTACVN
SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX
0.768 0.528
Six4
M00563_2.00
Drosophila melanogaster
NNDANMHNN

NNDKNTHNN
PBM
Busser et al.(2012a)
Six4
0.768 0.491
Six4
M06530_2.00
Drosophila melanogaster
TGABAC

GTVTCA
B1H
Mathelier et al.(2014)
MA0204.1
0.768 0.491
Six4
M06334_2.00
Drosophila melanogaster
WDDTGABAC

GTVTCAHHW
B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364
0.768 0.491
Six4
M06335_2.00
Drosophila melanogaster
NTGAKACB

VGTMTCAN
B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364
0.768 0.491
Six4
M06336_2.00
Drosophila melanogaster
NNNTGABA

TVTCANNN
B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364
0.768 0.491
Six2
M00425_2.00
Mus musculus
NNAYMYNN

NNRKRTNN
PBM
Berger et al.(2008)
Six2_2307
0.687 0.547
Six1
M00512_2.00
Mus musculus
NNDATMYNNN

NNNRKATHNN
PBM
Berger et al.(2008)
Six1_0935
0.687 0.547
SIX1
M05094_2.00
Homo sapiens
NNYGATACVB

VBGTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX
0.687 0.547
SIX1
M05096_2.00
Homo sapiens
NNYGATAYVB

VBRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX
0.687 0.547
SIX2
M05285_2.00
Homo sapiens
NNYGATACSB

VSGTATCRNN
SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX
0.687 0.547
SIX2
M05287_2.00
Homo sapiens
NSGTRWCRYN

NRYGWYACSN
SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX
0.687 0.547
SIX1
M08130_2.00
Homo sapiens
GWAACCTGANM

KNTCAGGTTWC
ChIP-seq
Mathelier et al.(2014)
MA1118.1
0.687 0.547
SIX2
M08133_2.00
Homo sapiens
NNNTGWAACCTGAKMH

DKMTCAGGTTWCANNN
ChIP-seq
Mathelier et al.(2014)
MA1119.1
0.687 0.547
SIX1
M09142_2.00
Homo sapiens
DGWAAYHTGABMYN

NRKVTCADRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A
0.687 0.547
SIX2
M09157_2.00
Homo sapiens
DGWAAYHHGABMH

DKVTCDDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A
0.687 0.547
Six2
M09185_2.00
Mus musculus
DGWAAYHYRABMYB

VRKVTYRDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A
0.687 0.547
Six1
M09579_2.00
Mus musculus
GWAAYHTGABMH

DKVTCADRTTWC
Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150
0.687 0.547
SIX1
M10684_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3_01
0.687 0.547
SIX1
M10685_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3
0.687 0.547
SIX1
M05095_2.00
Homo sapiens
NNYGATABNB

VNVTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX
0.687 0.547
SIX1
M05097_2.00
Homo sapiens
NNYGATAYSB

VSRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX
0.687 0.547
SIX2
M05286_2.00
Homo sapiens
NBRTATCRNN

NNYGATAYVN
SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX
0.687 0.547
SIX2
M05288_2.00
Homo sapiens
VBRTAWCRNN

NNYGWTAYVB
SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX
0.687 0.547
so
M02117_2.00
Drosophila melanogaster
NDATMYNNN

NNNRKATHN
PBM
Weirauch et al.(2014)
pTH5690
0.687 0.528
so
M03800_2.00
Drosophila melanogaster
NYGATAYB

VRTATCRN
SELEX
Nitta et al.(2015)
so_1
0.687 0.528
so
M03801_2.00
Drosophila melanogaster
YKATAYNNNYGATAY

RTATCRNNNRTATMR
SELEX
Nitta et al.(2015)
so_2
0.687 0.528
so
M03802_2.00
Drosophila melanogaster
YGATACGTATCR

YGATACGTATCR
SELEX
Nitta et al.(2015)
so_3
0.687 0.528
so
M03803_2.00
Drosophila melanogaster
RTATCRYGATAC

GTATCRYGATAY
SELEX
Nitta et al.(2015)
so_4
0.687 0.528
so
M06497_2.00
Drosophila melanogaster
TGATAC

GTATCA
B1H
Mathelier et al.(2014)
MA0246.1
0.687 0.528
so
M06268_2.00
Drosophila melanogaster
NRTGATA

TATCAYN
B1H
Zhu et al.(2011)
So_Cell_FBgn0003460
0.687 0.528
so
M06269_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460
0.687 0.528
ceh-34
M00672_2.00
Caenorhabditis elegans
NNNRDAWNNN

NNNWTHYNNN
PBM
Narasimhan et al.(2015)
pTH9708
0.619 0.491
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CJA00270 Homeodomain 214 267

Links

Other Homeodomain family TFs
Other Caenorhabditis japonica TFs

539 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL018165 Aedes aegypti AAEL018165 I 0.000
AALB002686 Anopheles albimanus AALB002686 I 0.000
AARA001806 Anopheles arabiensis AARA001806 I 0.000
AATE015045 Anopheles atroparvus AATE015045 I 0.000
ACUA026816 Anopheles culicifacies ACUA026816 I 0.000
ACYPI001903 Acyrthosiphon pisum ACYPI001903 I 0.000
ADIR010556 Anopheles dirus ADIR010556 I 0.000
AEPI001144 Anopheles epiroticus AEPI001144 I 0.000
AFAF008331 Anopheles farauti AFAF008331 I 0.000
AFUN001113 Anopheles funestus AFUN001113 I 0.000
AMAM012836 Anopheles maculatus AMAM012836 I 0.000
AMEC007874 Anopheles melas AMEC007874 I 0.000
AMEM018425 Anopheles merus AMEM018425 I 0.000
AMIN000536 Anopheles minimus AMIN000536 I 0.000
AQUA006531 Anopheles quadriannulatus AQUA006531 I 0.000
ASIS010497 Anopheles sinensis ASIS010497 I 0.000
BGIBMGA013132 Bombyx mori BGIBMGA013132 I 0.000
CapteG226618 Capitella teleta CapteG226618 I 0.000
Cflo_09868--XP_624689.2_APIME Camponotus floridanus Cflo_09868--XP_624689.2_APIME I 0.000
CPIJ007784 Culex quinquefasciatus CPIJ007784 I 0.000
CpipJ_CPIJ007784 Culex pipiens CpipJ_CPIJ007784 I 0.000
DAPPUDRAFT_3881 Daphnia pulex DAPPUDRAFT_3881 I 0.000
ENSAMEG00000001098 Ailuropoda melanoleuca ENSAMEG00000001098 I 0.000
ENSAMXG00000020444 Astyanax mexicanus ENSAMXG00000020444 I 0.000
ENSBTAP00000015683-D1 Bos grunniens ENSBTAP00000015683-D1 I 0.000
TBX10 Canis familiaris ENSCAFG00000011264 I 0.000
TBX1 Callithrix jacchus ENSCJAG00000014591 I 0.000
ENSCSAG00000011818 Chlorocebus sabaeus ENSCSAG00000011818 I 0.000
tbx1 Danio rerio ENSDARG00000031891 I 0.000
TBX1 Dasypus novemcinctus ENSDNOG00000035422 I 0.000
ENSFALG00000008041 Ficedula albicollis ENSFALG00000008041 I 0.000
TBX10 Felis catus ENSFCAG00000001760 I 0.000
ENSFCAG00000005446 Felis catus ENSFCAG00000005446 I 0.000
TBX1 Homo sapiens ENSG00000184058 D 0.000
tbx1 Gasterosteus aculeatus ENSGACG00000013057 I 0.000
ENSGGOG00000009181 Gorilla gorilla ENSGGOG00000009181 I 0.000
ENSGMOG00000018613 Gadus morhua ENSGMOG00000018613 I 0.000
ENSLACG00000016333 Latimeria chalumnae ENSLACG00000016333 I 0.000
TBX1 Loxodonta africana ENSLAFG00000021555 I 0.000
ENSMEUG00000011624 Macropus eugenii ENSMEUG00000011624 I 0.000
TBX1 Monodelphis domestica ENSMODG00000021176 I 0.000
TBX10 Monodelphis domestica ENSMODG00000021334 I 0.000
ENSMPUG00000004076 Mustela putorius furo ENSMPUG00000004076 I 0.000
Tbx1 Mus musculus ENSMUSG00000009097 D 0.000
TBX1 Otolemur garnettii ENSOGAG00000003596 I 0.000
ENSONIG00000015827 Oreochromis niloticus ENSONIG00000015827 I 0.000
tbx1 Oryzias latipes ENSORLG00000015256 I 0.000
ENSP00000331791-D2 Bos grunniens ENSP00000331791-D2 I 0.000
ENSPANG00000015763 Papio anubis ENSPANG00000015763 I 0.000
TBX10 Procavia capensis ENSPCAG00000009585 I 0.000
ENSPFOG00000009540 Poecilia formosa ENSPFOG00000009540 I 0.000
ENSPFOG00000009621 Poecilia formosa ENSPFOG00000009621 I 0.000
TBX10 Pteropus vampyrus ENSPVAG00000008592 I 0.000
Tbx1 Rattus norvegicus ENSRNOG00000001892 I 0.000
ENSSTOG00000004505 Ictidomys tridecemlineatus ENSSTOG00000004505 I 0.000
TBX1 Taeniopygia guttata ENSTGUG00000008395 I 0.000
tbx1 Tetraodon nigroviridis ENSTNIG00000016767 I 0.000
tbx1 Takifugu rubripes ENSTRUG00000014017 I 0.000
org-1 Drosophila melanogaster FBgn0021767 D 0.000
GA10837 Drosophila pseudoobscura FBgn0070893 I 0.000
GF22584 Drosophila ananassae FBgn0099578 I 0.000
GG19051 Drosophila erecta FBgn0111257 I 0.000
GH12234 Drosophila grimshawi FBgn0119713 I 0.000
GI15769 Drosophila mojavensis FBgn0138518 I 0.000
GL20248 Drosophila persimilis FBgn0157843 I 0.000
GM21356 Drosophila sechellia FBgn0176237 I 0.000
GK19893 Drosophila willistoni FBgn0221891 I 0.000
GE17455 Drosophila yakuba FBgn0234921 I 0.000
fgenesh2_kg.scaffold_118000001 Branchiostoma floridae fgenesh2_kg.scaffold_118000001 I 0.000
GB55445 Apis mellifera GB55445 I 0.000
HMEL015536 Heliconius melpomene HMEL015536 I 0.000
Hsal_04471--XP_624689.2_APIME Harpegnathos saltator Hsal_04471--XP_624689.2_APIME I 0.000
KGM_08622 Danaus plexippus KGM_08622 I 0.000
L798_01101 Zootermopsis nevadensis L798_01101 I 0.000
LDEC008541 Leptinotarsa decemlineata LDEC008541 I 0.000
LLOJ005386 Lutzomyia longipalpis LLOJ005386 I 0.000
MDOA001403 Musca domestica MDOA001403 I 0.000
Myotis_brandtii_Tbx10_10030825 Myotis brandtii Myotis_brandtii_Tbx10_10030825 I 0.000
Myotis_brandtii_Tbx1_10021844 Myotis brandtii Myotis_brandtii_Tbx1_10021844 I 0.000
NV11904 Nasonia vitripennis NV11904 I 0.000
PHUM607490 Pediculus humanus PHUM607490 I 0.000
Pvit_15846 Pogona vitticeps Pvit_15846 I 0.000
Sakowv30001714m.g Saccoglossus kowalevskii Sakowv30001714m.g I 0.000
SMAR009230 Strigamia maritima SMAR009230 I 0.000
TC015327 Tribolium castaneum TC015327 I 0.000
tbx1 Xenopus tropicalis XB-GENE-478084 I 0.000
tbx1.L Xenopus laevis XB-GENE-478088 I 0.000
tbx1.S Xenopus laevis XB-GENE-6254396 I 0.000
YQE_10853 Dendroctonus ponderosae YQE_10853 I 0.000