CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CJA01270
(
Caenorhabditis japonica
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
CJA01270
T205929_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ceh-23
M00671_2.00
Caenorhabditis elegans
HTAATTRNNN
NNNYAATTAD
PBM
Narasimhan et al.(2015)
pTH9478
0.693
0.860
Dll
M02112_2.00
Drosophila melanogaster
NVTAATTANN
NNTAATTABN
PBM
Weirauch et al.(2014)
pTH5506
0.622
0.500
Dll
M03777_2.00
Drosophila melanogaster
NTAATTRN
NYAATTAN
SELEX
Nitta et al.(2015)
Dll_1
0.622
0.500
Dll
M03778_2.00
Drosophila melanogaster
NTAATTRN
NYAATTAN
SELEX
Nitta et al.(2015)
Dll_2
0.622
0.500
Dll
M06479_2.00
Drosophila melanogaster
TAATTDB
VHAATTA
B1H
Mathelier et al.(2014)
MA0187.1
0.622
0.500
Dll
M06217_2.00
Drosophila melanogaster
TAATTDB
VHAATTA
B1H
Zhu et al.(2011)
Dll_Cell_FBgn0000157
0.622
0.500
Dll
M06218_2.00
Drosophila melanogaster
TAATKR
YMATTA
B1H
Zhu et al.(2011)
Dll_SOLEXA_FBgn0000157
0.622
0.500
Dlx3
M00387_2.00
Mus musculus
NTAATDRNN
NNYHATTAN
PBM
Berger et al.(2008)
Dlx3_1030
0.620
0.464
Dlx2
M00423_2.00
Mus musculus
NTAATNDNN
NNHNATTAN
PBM
Berger et al.(2008)
Dlx2_2273
0.620
0.464
DLX2
M03118_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
DLX2_1
0.620
0.464
DLX3
M03081_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
DLX3_1
0.620
0.464
Dlx2
M03254_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Dlx2_1
0.620
0.464
DLX2
M05026_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX2_eDBD_HT-SELEX
0.620
0.464
DLX2
M05028_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX2_FL_HT-SELEX
0.620
0.464
DLX3
M04922_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX3_eDBD_HT-SELEX
0.620
0.464
DLX3
M04925_2.00
Homo sapiens
NTAATTRB
VYAATTAN
SELEX
Yin et al.(2017)
DLX3_FL_HT-SELEX
0.620
0.464
DLX3
M09129_2.00
Homo sapiens
RVTAATTRVH
DBYAATTABY
Misc
Kulakovskiy et al.(2013)
DLX3_HUMAN.H11MO.0.C
0.620
0.464
Dlx3
M09172_2.00
Mus musculus
RVTAATTRVH
DBYAATTABY
Misc
Kulakovskiy et al.(2013)
DLX3_MOUSE.H11MO.0.C
0.620
0.464
DLX2
M10674_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX2_Q6
0.620
0.464
dlx3.L
M10803_2.00
Xenopus laevis
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX3_02
0.620
0.464
DLX3
M10638_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX3_Q3
0.620
0.464
DLX3
M10639_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX3_Q6
0.620
0.464
dlx3.L
M10804_2.00
Xenopus laevis
YAWRTAAAYAWWRY
RYWWTRTTTAYWWR
Transfac
Matys et al.(2006)
V$XFD1_01
0.620
0.464
DLX2
M05027_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX2_eDBD_Methyl-HT-SELEX
0.620
0.464
DLX2
M05029_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX2_FL_Methyl-HT-SELEX
0.620
0.464
DLX3
M04923_2.00
Homo sapiens
NTWAYKHB
VDMRTWAN
SELEX
Yin et al.(2017)
DLX3_eDBD_Methyl-HT-SELEX_1
0.620
0.464
DLX3
M04924_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX3_eDBD_Methyl-HT-SELEX_2
0.620
0.464
DLX3
M04926_2.00
Homo sapiens
NTWAYGHB
VDCRTWAN
SELEX
Yin et al.(2017)
DLX3_FL_Methyl-HT-SELEX_1
0.620
0.464
DLX3
M04927_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX3_FL_Methyl-HT-SELEX_2
0.620
0.464
Dlx4
M00409_2.00
Mus musculus
NWAATNDN
NHNATTWN
PBM
Berger et al.(2008)
Dlx4_3488
0.611
0.464
Dlx1
M00491_2.00
Mus musculus
NTAATNDNN
NNHNATTAN
PBM
Berger et al.(2008)
Dlx1_1741
0.611
0.464
DLX1
M03166_2.00
Homo sapiens
NNTAATTDNN
NNHAATTANN
SELEX
Jolma et al.(2013)
DLX1_1
0.611
0.464
DLX4
M03112_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
DLX4_1
0.611
0.464
DLX6
M03078_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
DLX6_1
0.611
0.464
Dlx1
M03281_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Dlx1_1
0.611
0.464
DLX1
M05176_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX1_eDBD_HT-SELEX
0.611
0.464
DLX1
M05178_2.00
Homo sapiens
NTAATTRB
VYAATTAN
SELEX
Yin et al.(2017)
DLX1_FL_HT-SELEX
0.611
0.464
DLX4
M05002_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX4_eDBD_HT-SELEX
0.611
0.464
DLX4
M05005_2.00
Homo sapiens
NTAATTRB
VYAATTAN
SELEX
Yin et al.(2017)
DLX4_FL_HT-SELEX
0.611
0.464
DLX6
M04905_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX6_eDBD_HT-SELEX
0.611
0.464
DLX1
M05177_2.00
Homo sapiens
NTAATTRB
VYAATTAN
SELEX
Yin et al.(2017)
DLX1_eDBD_Methyl-HT-SELEX
0.611
0.464
DLX1
M05179_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX1_FL_Methyl-HT-SELEX
0.611
0.464
DLX4
M05003_2.00
Homo sapiens
NTAAYRAB
VTYRTTAN
SELEX
Yin et al.(2017)
DLX4_eDBD_Methyl-HT-SELEX_1
0.611
0.464
DLX4
M05004_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX4_eDBD_Methyl-HT-SELEX_2
0.611
0.464
DLX4
M05006_2.00
Homo sapiens
NTAAYKAB
VTMRTTAN
SELEX
Yin et al.(2017)
DLX4_FL_Methyl-HT-SELEX_1
0.611
0.464
DLX4
M05007_2.00
Homo sapiens
NTAATTRB
VYAATTAN
SELEX
Yin et al.(2017)
DLX4_FL_Methyl-HT-SELEX_2
0.611
0.464
DLX6
M04906_2.00
Homo sapiens
NTAAYKAB
VTMRTTAN
SELEX
Yin et al.(2017)
DLX6_eDBD_Methyl-HT-SELEX_1
0.611
0.464
DLX6
M04907_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX6_eDBD_Methyl-HT-SELEX_2
0.611
0.464
Dlx5
M00449_2.00
Mus musculus
WRATNDN
NHNATYW
PBM
Berger et al.(2008)
Dlx5_3419
0.610
0.446
DLX5
M03095_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
DLX5_1
0.610
0.446
DLX5
M04953_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX5_eDBD_HT-SELEX
0.610
0.446
DLX5
M04956_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX5_FL_HT-SELEX
0.610
0.446
Dlx5
M09195_2.00
Mus musculus
WAATTRYWKBB
VVMWRYAATTW
Misc
Kulakovskiy et al.(2013)
DLX5_MOUSE.H11MO.0.C
0.610
0.446
DLX5
M10650_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX5_Q3
0.610
0.446
DLX5
M04954_2.00
Homo sapiens
NTAAYDAB
VTHRTTAN
SELEX
Yin et al.(2017)
DLX5_eDBD_Methyl-HT-SELEX_1
0.610
0.446
DLX5
M04955_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX5_eDBD_Methyl-HT-SELEX_2
0.610
0.446
DLX5
M04957_2.00
Homo sapiens
NTAAYGHB
VDCRTTAN
SELEX
Yin et al.(2017)
DLX5_FL_Methyl-HT-SELEX_1
0.610
0.446
DLX5
M04958_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX5_FL_Methyl-HT-SELEX_2
0.610
0.446
KLLA0_D10043g
M02140_2.00
Kluyveromyces lactis
NNNNWWNNNN
NNNNWWNNNN
PBM
Weirauch et al.(2014)
pTH6070
0.610
0.339
ro
M06495_2.00
Drosophila melanogaster
YTAATTA
TAATTAR
B1H
Mathelier et al.(2014)
MA0241.1
0.600
0.429
ro
M06264_2.00
Drosophila melanogaster
NYTAATTA
TAATTARN
B1H
Zhu et al.(2011)
Ro_Cell_FBgn0003267
0.600
0.429
ro
M06265_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
Ro_SOLEXA_FBgn0003267
0.600
0.429
Lhx1
M00405_2.00
Mus musculus
TRATDRNNN
NNNYHATYA
PBM
Berger et al.(2008)
Lhx1_2240
0.599
0.375
Lhx5
M00445_2.00
Mus musculus
TAATKRNNN
NNNYMATTA
PBM
Berger et al.(2008)
Lhx5_2279
0.599
0.375
LHX1
M05410_2.00
Homo sapiens
NTRATBRN
NYVATYAN
SELEX
Yin et al.(2017)
LHX1_eDBD_HT-SELEX
0.599
0.375
LHX5
M04936_2.00
Homo sapiens
NTAATTRS
SYAATTAN
SELEX
Yin et al.(2017)
LHX5_FL_HT-SELEX
0.599
0.375
LHX1
M05411_2.00
Homo sapiens
NHRAYGHN
NDCRTYDN
SELEX
Yin et al.(2017)
LHX1_eDBD_Methyl-HT-SELEX
0.599
0.375
LHX5
M04937_2.00
Homo sapiens
NTAAYGAN
NTCRTTAN
SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_1
0.599
0.375
LHX5
M04938_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_2
0.599
0.375
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA01270a
Homeodomain
12
67
TGRTIYGTTQTQQLEDMFRGQMYVVGAERESLALRLGLSPSQVRIWFQNRRSKQRR
CJA01270b
Homeodomain
34
90
SRGSTIYGTTQTQQLEDMFRGQMYVVGAERESLALRLGLSPSQVRIWFQNRRSKQRR
Links
Other
Homeodomain
family TFs
Other
Caenorhabditis japonica
TFs
712 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy