CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CJA22683
(
Caenorhabditis japonica
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
CJA22683
T205988_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hoxc12
M00508_2.00
Mus musculus
NDTWAYNDBN
NVHNRTWAHN
PBM
Berger et al.(2008)
Hoxc12_3480
0.610
0.386
HOXC12
M03135_2.00
Homo sapiens
TTTTATTRY
RYAATAAAA
SELEX
Jolma et al.(2013)
HOXC12_1
0.610
0.386
HOXC12
M03136_2.00
Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY
SELEX
Jolma et al.(2013)
HOXC12_2
0.610
0.386
HOXC12
M05083_2.00
Homo sapiens
NGYAATAAAAN
NTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1
0.610
0.386
HOXC12
M05084_2.00
Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2
0.610
0.386
HOXC12
M05085_2.00
Homo sapiens
NGYAATAAAAH
DTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1
0.610
0.386
HOXC12
M05086_2.00
Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2
0.610
0.386
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA22683
Homeodomain
158
214
KEGRKPFSRQQLKAMTERFGESEHIKKEDREVLAAEIGLTQLQIKVWFQNRRHKKRM
Links
Other
Homeodomain
family TFs
Other
Caenorhabditis japonica
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy