CPIJ004109 (Culex quinquefasciatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 CPIJ004109 T206115_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
bap
M00560_2.00
Drosophila melanogaster
NDAAGTRBNN

NNVYACTTHN
PBM
Busser et al.(2012a)
Bap
0.862 0.965
bap
M02119_2.00
Drosophila melanogaster
NYTAAGTRSNN

NNSYACTTARN
PBM
Weirauch et al.(2014)
pTH5945
0.862 0.965
bap
M03812_2.00
Drosophila melanogaster
NNTAAGTGBN

NVCACTTANN
SELEX
Nitta et al.(2015)
bap_1
0.862 0.965
bap
M06504_2.00
Drosophila melanogaster
TTAAGTR

YACTTAA
B1H
Mathelier et al.(2014)
MA0211.1
0.862 0.965
bap
M06287_2.00
Drosophila melanogaster
NBTTAAGTRN

NYACTTAAVN
B1H
Zhu et al.(2011)
Bap_Cell_FBgn0004862
0.862 0.965
bap
M06288_2.00
Drosophila melanogaster
NYTAAKTR

YAMTTARN
B1H
Zhu et al.(2011)
Bap_SOLEXA_FBgn0004862
0.862 0.965
Nkx3-2
M00506_2.00
Mus musculus
NNRAGDRNN

NNYHCTYNN
PBM
Berger et al.(2008)
Bapx1_2343
0.859 0.912
NKX3-2
M05012_2.00
Homo sapiens
NNTAAGTGSN

NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_HT-SELEX
0.859 0.912
NKX3-2
M09138_2.00
Homo sapiens
TTAAGTGBNH

DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_HUMAN.H11MO.0.C
0.859 0.912
Nkx3-2
M09212_2.00
Mus musculus
TTAAGTGBNH

DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_MOUSE.H11MO.0.B
0.859 0.912
NKX3-2
M10663_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX32_01
0.859 0.912
NKX3-2
M05013_2.00
Homo sapiens
NNTAAGTGBN

NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_1
0.859 0.912
NKX3-2
M05014_2.00
Homo sapiens
NTAACGHB

VDCGTTAN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_2
0.859 0.912
Nkx3-1
M00170_2.00
Mus musculus
NDAAGTRBNN

NNVYACTTHN
PBM
Badis et al.(2009)
Nkx3-1_2923
0.832 0.825
Nkx3-1
M00420_2.00
Mus musculus
NNAAGTRBNN

NNVYACTTNN
PBM
Berger et al.(2008)
Nkx3-1_2923
0.832 0.825
NKX3-1
M05255_2.00
Homo sapiens
NNTAAGTGSN

NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_HT-SELEX
0.832 0.825
NKX3-1
M09154_2.00
Homo sapiens
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_HUMAN.H11MO.0.C
0.832 0.825
Nkx3-1
M09184_2.00
Mus musculus
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_MOUSE.H11MO.0.C
0.832 0.825
NKX3-1
M09559_2.00
Homo sapiens
BTRAGTRBYY

RRVYACTYAV
Misc
Heinz et al.(2010)
LNCaP-Nkx3.1_GSE28264
0.832 0.825
NKX3-1
M10729_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_01
0.832 0.825
NKX3-1
M10730_2.00
Homo sapiens
NWWTAAGTATWH

DWATACTTAWWN
Transfac
Matys et al.(2006)
V$NKX3A_01
0.832 0.825
NKX3-1
M10731_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX3A_Q3
0.832 0.825
NKX3-1
M05256_2.00
Homo sapiens
NNTAAGTGBN

NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_1
0.832 0.825
NKX3-1
M05257_2.00
Homo sapiens
NTAAYSWB

VWSRTTAN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_2
0.832 0.825
ENSCING00000007395
M02076_2.00
Ciona intestinalis
NNNDWNWR

YWNWHNNN
PBM
Weirauch et al.(2014)
pTH5922
0.829 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CPIJ004109-PA Homeodomain 212 268

Links

Other Homeodomain family TFs
Other Culex quinquefasciatus TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_00539 Aegilops tauschii F775_00539 N 0.000
Aquca_010_00033 Aquilegia coerulea Aquca_010_00033 N 0.000
fgenesh2_kg.6__1024__AT5G10570.1 Arabidopsis lyrata fgenesh2_kg.6__1024__AT5G10570.1 N 0.000
bHLH093 Arabidopsis lyrata fgenesh2_kg.8__2611__AT5G65640.1 N 0.000
BHLH61 Arabidopsis thaliana AT5G10570 N 0.000
BHLH93 Arabidopsis thaliana AT5G65640 N 0.000
Bostr.13175s0042 Boechera stricta Bostr.13175s0042 N 0.000
Bostr.0568s0223 Boechera stricta Bostr.0568s0223 N 0.000
BRADI1G76030 Brachypodium distachyon BRADI1G76030 N 0.000
BRADI1G30000 Brachypodium distachyon BRADI1G30000 N 0.000
Bo2g168250 Brassica oleracea Bo2g168250 N 0.000
Bo3g097890 Brassica oleracea Bo3g097890 N 0.000
Bo9g171940 Brassica oleracea Bo9g171940 N 0.000
Bra031852 Brassica rapa Bra031852 N 0.000
Bra024404 Brassica rapa Bra024404 N 0.000
PK12634.1 Cannabis sativa PK12634.1 N 0.000
Cagra.0917s0023 Capsella grandiflora Cagra.0917s0023 N 0.000
Carubv10026606m.g Capsella rubella Carubv10026606m.g N 0.000
evm.TU.supercontig_129.19 Carica papaya evm.TU.supercontig_129.19 N 0.000
evm.TU.supercontig_177.1 Carica papaya evm.TU.supercontig_177.1 N 0.000
Ca_11531 Cicer arietinum Ca_11531 N 0.000
Cla023435 Citrullus lanatus Cla023435 N 0.000
Cla014300 Citrullus lanatus Cla014300 N 0.000
Ciclev10025967m.g Citrus clementina Ciclev10025967m.g N 0.000
Ciclev10001683m.g Citrus clementina Ciclev10001683m.g N 0.000
orange1.1g018897m.g Citrus sinensis orange1.1g018897m.g N 0.000
orange1.1g038389m.g Citrus sinensis orange1.1g038389m.g N 0.000
Cucsa.103760 Cucumis sativus Cucsa.103760 N 0.000
Cucsa.312190 Cucumis sativus Cucsa.312190 N 0.000
Eucgr.F00459 Eucalyptus grandis Eucgr.F00459 N 0.000
Eucgr.I00608 Eucalyptus grandis Eucgr.I00608 N 0.000
Eucgr.F02171 Eucalyptus grandis Eucgr.F02171 N 0.000
Thhalv10004732m.g Eutrema salsugineum Thhalv10004732m.g N 0.000
gene26895-v1.0-hybrid Fragaria vesca gene26895-v1.0-hybrid N 0.000
gene05560-v1.0-hybrid Fragaria vesca gene05560-v1.0-hybrid N 0.000
GLYMA08G37240 Glycine max GLYMA08G37240 N 0.000
GLYMA09G33590 Glycine max GLYMA09G33590 N 0.000
GLYMA04G09580 Glycine max GLYMA04G09580 N 0.000
GLYMA01G02390 Glycine max GLYMA01G02390 N 0.000
GLYMA06G09670 Glycine max GLYMA06G09670 N 0.000
Gorai.010G031800 Gossypium raimondii Gorai.010G031800 N 0.000
Gorai.003G035900 Gossypium raimondii Gorai.003G035900 N 0.000
Gorai.009G226200 Gossypium raimondii Gorai.009G226200 N 0.000
Gorai.007G229900 Gossypium raimondii Gorai.007G229900 N 0.000
Gorai.002G137900 Gossypium raimondii Gorai.002G137900 N 0.000
MLOC_55768 Hordeum vulgare MLOC_55768 N 0.000
LPERR06G23280 Leersia perrieri LPERR06G23280 N 0.000
LPERR03G02580 Leersia perrieri LPERR03G02580 N 0.000
Lus10039631.g Linum usitatissimum Lus10039631.g N 0.000
Lus10002160.g Linum usitatissimum Lus10002160.g N 0.000
chr2.CM0177.460.nc Lotus japonicus chr2.CM0177.460.nc N 0.000
LjSGA_043777.1 Lotus japonicus LjSGA_043777.1 N 0.000
MDP0000644807 Malus domestica MDP0000644807 N 0.000
MDP0000603926 Malus domestica MDP0000603926 N 0.000
MDP0000312274 Malus domestica MDP0000312274 N 0.000
MDP0000175282 Malus domestica MDP0000175282 N 0.000
MDP0000178782 Malus domestica MDP0000178782 N 0.000
cassava1707.valid.m1 Manihot esculenta cassava1707.valid.m1 N 0.000
cassava42105.valid.m1 Manihot esculenta cassava42105.valid.m1 N 0.000
cassava35909.valid.m1 Manihot esculenta cassava35909.valid.m1 N 0.000
cassava20174.m1 Manihot esculenta cassava20174.m1 N 0.000
MTR_5g030770 Medicago truncatula MTR_5g030770 N 0.000
mgf017272m Mimulus guttatus mgf017272m N 0.000
mgf011848m Mimulus guttatus mgf011848m N 0.000
GSMUA_AchrUn_randomG16890_001 Musa acuminata GSMUA_AchrUn_randomG16890_001 N 0.000
GSMUA_Achr8G34120_001 Musa acuminata GSMUA_Achr8G34120_001 N 0.000
GSMUA_Achr7G03930_001 Musa acuminata GSMUA_Achr7G03930_001 N 0.000
GSMUA_Achr1G26300_001 Musa acuminata GSMUA_Achr1G26300_001 N 0.000
OBART10G17440 Oryza barthii OBART10G17440 N 0.000
OBART06G27860 Oryza barthii OBART06G27860 N 0.000
OBART06G27800 Oryza barthii OBART06G27800 N 0.000
OBART03G02840 Oryza barthii OBART03G02840 N 0.000
OB03G12820 Oryza brachyantha OB03G12820 N 0.000
ORGLA03G0026100 Oryza glaberrima ORGLA03G0026100 N 0.000
ORGLA10G0124500 Oryza glaberrima ORGLA10G0124500 N 0.000
OGLUM03G02750 Oryza glumaepatula OGLUM03G02750 N 0.000
OGLUM06G29220 Oryza glumaepatula OGLUM06G29220 N 0.000
BGIOSGA011499 Oryza indica BGIOSGA011499 N 0.000
BGIOSGA023624 Oryza indica BGIOSGA023624 N 0.000
BGIOSGA031474 Oryza indica BGIOSGA031474 N 0.000
OLONG_005983 Oryza longistaminata OLONG_005983 N 0.000
OMERI10G13920 Oryza meridionalis OMERI10G13920 N 0.000
OMERI03G02800 Oryza meridionalis OMERI03G02800 N 0.000
OMERI06G27810 Oryza meridionalis OMERI06G27810 N 0.000
ONIVA03G02430 Oryza nivara ONIVA03G02430 N 0.000
ONIVA10G19680 Oryza nivara ONIVA10G19680 N 0.000
ONIVA06G30800 Oryza nivara ONIVA06G30800 N 0.000
OPUNC06G25390 Oryza punctata OPUNC06G25390 N 0.000
OPUNC10G15730 Oryza punctata OPUNC10G15730 N 0.000
OPUNC03G02570 Oryza punctata OPUNC03G02570 N 0.000
ORUFI03G02540 Oryza rufipogon ORUFI03G02540 N 0.000
ORUFI10G18500 Oryza rufipogon ORUFI10G18500 N 0.000
ORUFI06G29810 Oryza rufipogon ORUFI06G29810 N 0.000
OS10G0544200 Oryza sativa OS10G0544200 N 0.000
OS03G0135700 Oryza sativa OS03G0135700 N 0.000
Pavir.J25463 Panicum virgatum Pavir.J25463 N 0.000
Pavir.J18000 Panicum virgatum Pavir.J18000 N 0.000
Pavir.J18595 Panicum virgatum Pavir.J18595 N 0.000
Pavir.Ia04450 Panicum virgatum Pavir.Ia04450 N 0.000
Pavir.Ib00206 Panicum virgatum Pavir.Ib00206 N 0.000
PDK_20s1771821g001 Phoenix dactylifera PDK_20s1771821g001 N 0.000
POPTR_0002s10910 Populus trichocarpa POPTR_0002s10910 N 0.000
Pm004330 Prunus mume Pm004330 N 0.000
Pm002283 Prunus mume Pm002283 N 0.000
PRUPE_ppa007656mg Prunus persica PRUPE_ppa007656mg N 0.000
PRUPE_ppa016514mg Prunus persica PRUPE_ppa016514mg N 0.000
29596.m000688 Ricinus communis 29596.m000688 N 0.000
28179.m000457 Ricinus communis 28179.m000457 N 0.000
SapurV1A.0004s0900 Salix purpurea SapurV1A.0004s0900 N 0.000
Si006877m.g Setaria italica Si006877m.g N 0.000
Si036470m.g Setaria italica Si036470m.g N 0.000
Solyc12g088130.1 Solanum lycopersicum Solyc12g088130.1 N 0.000
Solyc02g091690.2 Solanum lycopersicum Solyc02g091690.2 N 0.000
Solyc02g063430.2 Solanum lycopersicum Solyc02g063430.2 N 0.000
PGSC0003DMG400030616 Solanum tuberosum PGSC0003DMG400030616 N 0.000
PGSC0003DMG400002056 Solanum tuberosum PGSC0003DMG400002056 N 0.000
PGSC0003DMG400006394 Solanum tuberosum PGSC0003DMG400006394 N 0.000
PGSC0003DMG400010388 Solanum tuberosum PGSC0003DMG400010388 N 0.000
Sb01g047940 Sorghum bicolor Sb01g047940 N 0.000
Sb10g030470 Sorghum bicolor Sb10g030470 N 0.000
TCM_034574 Theobroma cacao TCM_034574 N 0.000
TCM_000915 Theobroma cacao TCM_000915 N 0.000
Traes_4DL_5851FBD0C Triticum aestivum Traes_4DL_5851FBD0C N 0.000
Traes_7DL_67FF12B6A Triticum aestivum Traes_7DL_67FF12B6A N 0.000
Traes_4DL_1C0F38900 Triticum aestivum Traes_4DL_1C0F38900 N 0.000
Traes_4DL_0075CCAD9 Triticum aestivum Traes_4DL_0075CCAD9 N 0.000
Traes_4DL_ACF3BE9C5 Triticum aestivum Traes_4DL_ACF3BE9C5 N 0.000
TRIUR3_29035 Triticum urartu TRIUR3_29035 N 0.000
VIT_18s0001g08040 Vitis vinifera VIT_18s0001g08040 N 0.000
VIT_00s1312g00010 Vitis vinifera VIT_00s1312g00010 N 0.000
VIT_17s0000g03550 Vitis vinifera VIT_17s0000g03550 N 0.000
GRMZM2G128807 Zea mays GRMZM2G128807 N 0.000
GRMZM2G435015 Zea mays GRMZM2G435015 N 0.000
GRMZM2G173372 Zea mays GRMZM2G173372 N 0.000