CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CRE00191
(
Caenorhabditis remanei
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
CRE00191
T206180_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ceh-54
M02188_2.00
Caenorhabditis elegans
HTAATTRVN
NBYAATTAD
PBM
Weirauch et al.(2014)
pTH5643
0.830
0.789
Esx1
M00424_2.00
Mus musculus
NYTAATWR
YWATTARN
PBM
Berger et al.(2008)
Esx1_3124
0.695
0.544
P79681_ACIBE
M02200_2.00
Acipenser baerii
DTAATTRB
VYAATTAH
PBM
Weirauch et al.(2014)
pTH6156
0.626
0.561
HESX1
M00309_2.00
Homo sapiens
HTAATTRGN
NCYAATTAD
PBM
Barrera et al.(2016)
HESX1_REF
0.626
0.544
HESX1
M00307_2.00
Homo sapiens
TAATTRNN
NNYAATTA
PBM
Barrera et al.(2016)
HESX1_N125S
0.626
0.544
HESX1
M00308_2.00
Homo sapiens
NATAHATRN
NYATDTATN
PBM
Barrera et al.(2016)
HESX1_R160C
0.626
0.526
CG9876
M03865_2.00
Drosophila melanogaster
SVTVATBRSN
NSYVATBABS
SELEX
Nitta et al.(2015)
CG9876_1
0.617
0.667
CG9876
M03866_2.00
Drosophila melanogaster
NTAATTRV
BYAATTAN
SELEX
Nitta et al.(2015)
CG9876_2
0.617
0.667
CG9876
M03867_2.00
Drosophila melanogaster
TAATYTAATTA
TAATTARATTA
SELEX
Nitta et al.(2015)
CG9876_3
0.617
0.667
CG9876
M03868_2.00
Drosophila melanogaster
TAATTRVNTAATTR
YAATTANBYAATTA
SELEX
Nitta et al.(2015)
CG9876_4
0.617
0.667
CG9876
M06537_2.00
Drosophila melanogaster
BTAATTR
YAATTAV
B1H
Mathelier et al.(2014)
MA0184.1
0.617
0.667
CG9876
M06350_2.00
Drosophila melanogaster
DBTAATTR
YAATTAVH
B1H
Zhu et al.(2011)
CG9876_Cell_FBgn0034821
0.617
0.667
CG9876
M06351_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
CG9876_SOLEXA_FBgn0034821
0.617
0.667
HESX1
M00306_2.00
Homo sapiens
WRATDRNN
NNYHATYW
PBM
Barrera et al.(2016)
HESX1_E149K
0.606
0.526
ENSCING00000016045
M02078_2.00
Ciona intestinalis
NNYTAATTRGN
NCYAATTARNN
PBM
Weirauch et al.(2014)
pTH6551
0.605
0.561
Prrx1
M00431_2.00
Mus musculus
TAATTRNN
NNYAATTA
PBM
Berger et al.(2008)
Prrx1_3442
0.605
0.649
Prrx2
M00486_2.00
Mus musculus
WRATNNN
NNNATYW
PBM
Berger et al.(2008)
Prrx2_3072
0.605
0.649
PRRX1
M03120_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
PRRX1_1
0.605
0.649
PRRX1
M03121_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
PRRX1_2
0.605
0.649
PRRX1
M03122_2.00
Homo sapiens
TAATTVRRTTA
TAAYYBAATTA
SELEX
Jolma et al.(2013)
PRRX1_3
0.605
0.649
PRRX2
M03200_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
PRRX2_1
0.605
0.649
Prrx2
M03277_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Prrx2_1
0.605
0.649
PRRX2
M05262_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
PRRX2_FL_HT-SELEX
0.605
0.649
PRRX2
M05258_2.00
Homo sapiens
NTNAYGHN
NDCRTNAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_HT-SELEX_1
0.605
0.649
PRRX2
M05259_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_HT-SELEX_2
0.605
0.649
PRRX2
M09156_2.00
Homo sapiens
HTAATTR
YAATTAD
Misc
Kulakovskiy et al.(2013)
PRRX2_HUMAN.H11MO.0.C
0.605
0.649
Prrx2
M09207_2.00
Mus musculus
HTAATTR
YAATTAD
Misc
Kulakovskiy et al.(2013)
PRRX2_MOUSE.H11MO.0.C
0.605
0.649
Prrx1
M10770_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PMX1_01
0.605
0.649
PRRX1
M10675_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PMX1_Q6
0.605
0.649
PRRX2
M10735_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRRX2_05
0.605
0.649
PRRX2
M10776_2.00
Sus scrofa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRX2_Q2
0.605
0.649
Prrx2
M10767_2.00
Mus musculus
HNVHTAATTRRNHNDW
WHNDNYYAATTADBND
Transfac
Matys et al.(2006)
V$S8_01
0.605
0.649
PRRX2
M05260_2.00
Homo sapiens
NTAAYGHN
NDCRTTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_Methyl-HT-SELEX_1
0.605
0.649
PRRX2
M05261_2.00
Homo sapiens
NTAATYRN
NYRATTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_Methyl-HT-SELEX_2
0.605
0.649
PRRX2
M05263_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
PRRX2_FL_Methyl-HT-SELEX_1
0.605
0.649
PRRX2
M05264_2.00
Homo sapiens
HTAAYGHN
NDCRTTAD
SELEX
Yin et al.(2017)
PRRX2_FL_Methyl-HT-SELEX_2
0.605
0.649
NEMVEDRAFT_v1g105595
M02143_2.00
Nematostella vectensis
NTWATWRN
NYWATWAN
PBM
Weirauch et al.(2014)
pTH5503
0.599
0.596
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE00191
Homeodomain
48
104
KRNRITFEASQIDELEKVFANNQYPDATVREQLAKKVQLQEERVQIWFQNRRAKFRR
Links
Other
Homeodomain
family TFs
Other
Caenorhabditis remanei
TFs
286 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy