CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
CRE18960
(
Caenorhabditis remanei
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
CRE18960
T206260_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBG24578
M02065_2.00
Caenorhabditis briggsae
NNNTGACAKSTN
NASMTGTCANNN
PBM
Weirauch et al.(2014)
pTH6524
0.867
0.982
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE18960
Homeodomain
392
449
RKVPKVFSKEAITKFRAWLFQNLSHPYPSEDQKKQLAKETGLTILQVNNWFINARRRI
Links
Other
Homeodomain
family TFs
Other
Caenorhabditis remanei
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ASU_10550
Ascaris suum
ASU_10550
I
0.867
XP_002647234.1
Caenorhabditis briggsae
XP_002647234.1
I
0.867
CJA02489
Caenorhabditis japonica
CJA02489
I
0.867
CBG24578
Caenorhabditis briggsae
CBG24578
D
0.867
unc-62
Caenorhabditis elegans
WBGene00006796
D
0.866
PTRK_0001375800
Parastrongyloides trichosuri
PTRK_0001375800
I
0.855
L596_g16822
Steinernema carpocapsae
L596_g16822
I
0.855
L893_g8903
Steinernema glaseri
L893_g8903
I
0.855
SSTP_0001175600
Strongyloides stercoralis
SSTP_0001175600
I
0.855
SVE_0999800
Strongyloides venezuelensis
SVE_0999800
I
0.855
L892_g28686
Steinernema scapterisci
L892_g28686
I
0.855
SPAL_0001594500
Strongyloides papillosus
SPAL_0001594500
I
0.855
GPLIN_000275800
Globodera pallida
GPLIN_000275800
I
0.707
fgenesh2_pg.scaffold_23000011
Monosiga brevicollis
fgenesh2_pg.scaffold_23000011
I
0.646
SLOPH_443
Spraguea lophii
SLOPH_443
I
0.618
BTMF_0000901301
Brugia timori
BTMF_0000901301
I
0.599
WBGene00242324
Onchocerca volvulus
WBGene00242324
I
0.599
nLs.2.1.2.g05683
Litomosoides sigmodontis
nLs.2.1.2.g05683
I
0.599
nAv.1.0.1.g05377
Acanthocheilonema viteae
nAv.1.0.1.g05377
I
0.599
nDi.2.2.2.g04955
Dirofilaria immitis
nDi.2.2.2.g04955
I
0.599
Bm10123
Brugia malayi
Bm10123
I
0.599