CRE27322 (Caenorhabditis remanei)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 CRE27322 T206306_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Six3
M00483_2.00
Mus musculus
NNNAYMN

NKRTNNN
PBM
Berger et al.(2008)
Six3_1732
0.842 0.895
SIX3
M05159_2.00
Homo sapiens
NNYGATABBN

NVVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX
0.842 0.895
SIX3
M10698_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX3_Q6
0.842 0.895
SIX3
M05160_2.00
Homo sapiens
NNYGATABVB

VBVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX
0.842 0.895
Optix
M02124_2.00
Drosophila melanogaster
NNNNNDATMN

NKATHNNNNN
PBM
Weirauch et al.(2014)
pTH5437
0.842 0.860
Optix
M03850_2.00
Drosophila melanogaster
TAATYTAATTA

TAATTARATTA
SELEX
Nitta et al.(2015)
Optix_1
0.842 0.860
Optix
M06526_2.00
Drosophila melanogaster
TGATA

TATCA
B1H
Mathelier et al.(2014)
MA0199.1
0.842 0.860
Optix
M06327_2.00
Drosophila melanogaster
HHVTGATA

TATCABDD
B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360
0.842 0.860
Optix
M06328_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360
0.842 0.860
SIX6
M00326_2.00
Homo sapiens
NNDATMB

VKATHNN
PBM
Barrera et al.(2016)
SIX6_REF
0.840 0.877
Six6
M00169_2.00
Mus musculus
NNAYMNN

NNKRTNN
PBM
Badis et al.(2009)
Six6_2267
0.840 0.877
Six6
M00412_2.00
Mus musculus
NNNTGATAYCN

NGRTATCANNN
PBM
Berger et al.(2008)
Six6_2267
0.840 0.877
SIX6
M05357_2.00
Homo sapiens
NNYGATASVB

VBSTATCRNN
SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX
0.840 0.877
SIX6
M00325_2.00
Homo sapiens
NNNDATMB

VKATHNNN
PBM
Barrera et al.(2016)
SIX6_H141N
0.840 0.877
SIX6
M05358_2.00
Homo sapiens
VBVYAYCRNN

NNYGRTRBVB
SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX
0.840 0.877
six3
M02102_2.00
Oryzias latipes
NNDAYMBNNN

NNNVKRTHNN
PBM
Weirauch et al.(2014)
pTH5928
0.840 0.860
SIX6
M00327_2.00
Homo sapiens
NHDAYMBNN

NNVKRTHDN
PBM
Barrera et al.(2016)
SIX6_T165A
0.834 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CRE27322 Homeodomain 185 241

Links

Other Homeodomain family TFs
Other Caenorhabditis remanei TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL009212 Aedes aegypti AAEL009212 I 0.000
AATE008285 Anopheles atroparvus AATE008285 N 0.000
ACUA004154 Anopheles culicifacies ACUA004154 N 0.000
ADIR004657 Anopheles dirus ADIR004657 N 0.000
AGAP005245 Anopheles gambiae AGAP005245 N 0.000
ASIS018105 Anopheles sinensis ASIS018105 N 0.000
ASTEI05993 Anopheles stephensi ASTEI05993 N 0.000
GB53480 Apis mellifera GB53480 N 0.000
ACEP17037 Atta cephalotes ACEP17037 N 0.000
Cflo_10046--XP_001120340.1_APIME Camponotus floridanus Cflo_10046--XP_001120340.1_APIME N 0.000
CLEC025019 Cimex lectularius CLEC025019 N 0.000
GF11097 Drosophila ananassae FBgn0088137 N 0.000
GG22734 Drosophila erecta FBgn0114899 N 0.000
GH20622 Drosophila grimshawi FBgn0128085 N 0.000
GI20183 Drosophila mojavensis FBgn0142919 N 0.000
GL17193 Drosophila persimilis FBgn0154796 N 0.000
GM20512 Drosophila sechellia FBgn0175394 N 0.000
GD25971 Drosophila simulans FBgn0197248 N 0.000
GJ20133 Drosophila virilis FBgn0207273 N 0.000
GE13093 Drosophila yakuba FBgn0230795 N 0.000
HHAL002502-PA Halyomorpha halys HHAL002502-PA N 0.000
LDEC000374 Leptinotarsa decemlineata LDEC000374 N 0.000
LCUP002990 Lucilia cuprina LCUP002990 N 0.000
NV30906 Nasonia vitripennis NV30906 N 0.000
RPRC014104 Rhodnius prolixus RPRC014104 N 0.000