ENSAMXG00000002250 (Astyanax mexicanus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSAMXG00000002250 T207013_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nkx3-2
M00506_2.00 		Mus musculus
NNRAGDRNN
NNYHCTYNN		 PBM
Berger et al.(2008)
Bapx1_2343 		0.848 0.912
NKX3-2
M05012_2.00 		Homo sapiens
NNTAAGTGSN
NSCACTTANN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_HT-SELEX 		0.848 0.912
NKX3-2
M09138_2.00 		Homo sapiens
TTAAGTGBNH
DNVCACTTAA		 Misc
Kulakovskiy et al.(2013)
NKX32_HUMAN.H11MO.0.C 		0.848 0.912
Nkx3-2
M09212_2.00 		Mus musculus
TTAAGTGBNH
DNVCACTTAA		 Misc
Kulakovskiy et al.(2013)
NKX32_MOUSE.H11MO.0.B 		0.848 0.912
NKX3-2
M10663_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX32_01 		0.848 0.912
NKX3-2
M05013_2.00 		Homo sapiens
NNTAAGTGBN
NVCACTTANN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_1 		0.848 0.912
NKX3-2
M05014_2.00 		Homo sapiens
NTAACGHB
VDCGTTAN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_2 		0.848 0.912
bap
M00560_2.00 		Drosophila melanogaster
NDAAGTRBNN
NNVYACTTHN		 PBM
Busser et al.(2012a)
Bap 		0.841 0.842
bap
M02119_2.00 		Drosophila melanogaster
NYTAAGTRSNN
NNSYACTTARN		 PBM
Weirauch et al.(2014)
pTH5945 		0.841 0.842
bap
M03812_2.00 		Drosophila melanogaster
NNTAAGTGBN
NVCACTTANN		 SELEX
Nitta et al.(2015)
bap_1 		0.841 0.842
bap
M06504_2.00 		Drosophila melanogaster
TTAAGTR
YACTTAA		 B1H
Mathelier et al.(2014)
MA0211.1 		0.841 0.842
bap
M06287_2.00 		Drosophila melanogaster
NBTTAAGTRN
NYACTTAAVN		 B1H
Zhu et al.(2011)
Bap_Cell_FBgn0004862 		0.841 0.842
bap
M06288_2.00 		Drosophila melanogaster
NYTAAKTR
YAMTTARN		 B1H
Zhu et al.(2011)
Bap_SOLEXA_FBgn0004862 		0.841 0.842
ENSCING00000007395
M02076_2.00 		Ciona intestinalis
NNNDWNWR
YWNWHNNN		 PBM
Weirauch et al.(2014)
pTH5922 		0.836 0.702
Nkx3-1
M00170_2.00 		Mus musculus
NDAAGTRBNN
NNVYACTTHN		 PBM
Badis et al.(2009)
Nkx3-1_2923 		0.834 0.825
Nkx3-1
M00420_2.00 		Mus musculus
NNAAGTRBNN
NNVYACTTNN		 PBM
Berger et al.(2008)
Nkx3-1_2923 		0.834 0.825
NKX3-1
M05255_2.00 		Homo sapiens
NNTAAGTGSN
NSCACTTANN		 SELEX
Yin et al.(2017)
NKX3-1_eDBD_HT-SELEX 		0.834 0.825
NKX3-1
M09154_2.00 		Homo sapiens
NYDAAGTGBYWD
HWRVCACTTHRN		 Misc
Kulakovskiy et al.(2013)
NKX31_HUMAN.H11MO.0.C 		0.834 0.825
Nkx3-1
M09184_2.00 		Mus musculus
NYDAAGTGBYWD
HWRVCACTTHRN		 Misc
Kulakovskiy et al.(2013)
NKX31_MOUSE.H11MO.0.C 		0.834 0.825
NKX3-1
M09559_2.00 		Homo sapiens
BTRAGTRBYY
RRVYACTYAV		 Misc
Heinz et al.(2010)
LNCaP-Nkx3.1_GSE28264 		0.834 0.825
NKX3-1
M10729_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_01 		0.834 0.825
NKX3-1
M10730_2.00 		Homo sapiens
NWWTAAGTATWH
DWATACTTAWWN		 Transfac
Matys et al.(2006)
V$NKX3A_01 		0.834 0.825
NKX3-1
M10731_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX3A_Q3 		0.834 0.825
NKX3-1
M05256_2.00 		Homo sapiens
NNTAAGTGBN
NVCACTTANN		 SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_1 		0.834 0.825
NKX3-1
M05257_2.00 		Homo sapiens
NTAAYSWB
VWSRTTAN		 SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_2 		0.834 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMXP00000002295 Homeodomain 120 176

Links

Other Homeodomain family TFs
Other Astyanax mexicanus TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CGI_10023919 Crassostrea gigas CGI_10023919 I 0.860
nkx3.3 Danio rerio ENSDARG00000069327 I 0.860
ENSXMAG00000020095 Xiphophorus maculatus ENSXMAG00000020095 I 0.860
SPU_013047 Strongylocentrotus purpuratus SPU_013047 I 0.860
SMAR005030 Strigamia maritima SMAR005030 I 0.860
estExt_fgenesh2_pg.C_1430013 Branchiostoma floridae estExt_fgenesh2_pg.C_1430013 I 0.860
ENSPFOG00000020885 Poecilia formosa ENSPFOG00000020885 I 0.860
ENSORLG00000007716 Oryzias latipes ENSORLG00000007716 I 0.860
ENSLACG00000012763 Latimeria chalumnae ENSLACG00000012763 I 0.860
ENSLOCG00000009031 Lepisosteus oculatus ENSLOCG00000009031 I 0.860
nkx3-3 Xenopus tropicalis XB-GENE-479908 I 0.860
Sakowv30040088m.g Saccoglossus kowalevskii Sakowv30040088m.g I 0.860
PHUM439840 Pediculus humanus PHUM439840 I 0.860
nkx3.3 Gasterosteus aculeatus ENSGACG00000007573 I 0.858
NEMVEDRAFT_v1g208034 Nematostella vectensis NEMVEDRAFT_v1g208034 I 0.855
ISCW014989 Ixodes scapularis ISCW014989 I 0.852
NKX3-2 Otolemur garnettii ENSOGAG00000015615 I 0.848
NKX3-2 Oryctolagus cuniculus ENSOCUG00000009039 I 0.848
ENSNLEG00000016256 Nomascus leucogenys ENSNLEG00000016256 I 0.848
ENSONIG00000002379 Oreochromis niloticus ENSONIG00000002379 I 0.848
nkx3.2 Oryzias latipes ENSORLG00000000593 I 0.848
ENSOPRG00000005452 Ochotona princeps ENSOPRG00000005452 I 0.848
NKX3-2 Myotis lucifugus ENSMLUG00000008362 I 0.848
ENSMICG00000000190 Microcebus murinus ENSMICG00000000190 I 0.848
ENSLOCG00000009892 Lepisosteus oculatus ENSLOCG00000009892 I 0.848
NKX3-2 Loxodonta africana ENSLAFG00000031404 I 0.848
ENSPANG00000021310 Papio anubis ENSPANG00000021310 I 0.848
ENSMMUG00000022026 Macaca mulatta ENSMMUG00000022026 I 0.848
ENSMPUG00000000476 Mustela putorius furo ENSMPUG00000000476 I 0.848
NKX3-2 Monodelphis domestica ENSMODG00000024753 I 0.848
Nkx3-2 Mus musculus ENSMUSG00000049691 D 0.848
NKX3-2 Pteropus vampyrus ENSPVAG00000002830 I 0.848
Alligator_sinensis_CCG000534.1 Alligator sinensis Alligator_sinensis_CCG000534.1 I 0.848
MCINX004875 Melitaea cinxia MCINX004875 I 0.848
KGM_11246 Danaus plexippus KGM_11246 I 0.848
HMEL006181 Heliconius melpomene HMEL006181 I 0.848
Pvit_15821 Pogona vitticeps Pvit_15821 I 0.848
Ocbimv22026957m.g Octopus bimaculoides Ocbimv22026957m.g I 0.848
nkx3-2.S Xenopus laevis XB-GENE-876836 I 0.848
nkx3-2 Xenopus tropicalis XB-GENE-876834 I 0.848
nkx3-3.S Xenopus laevis XB-GENE-865322 I 0.848
ENSXMAG00000016282 Xiphophorus maculatus ENSXMAG00000016282 I 0.848
ENSTTRG00000003623 Tursiops truncatus ENSTTRG00000003623 I 0.848
ENSPSIG00000012169 Pelodiscus sinensis ENSPSIG00000012169 I 0.848
ENSPPYG00000014611 Pongo abelii ENSPPYG00000014611 I 0.848
ENSPFOG00000002882 Poecilia formosa ENSPFOG00000002882 I 0.848
ENSPTRG00000031253 Pan troglodytes ENSPTRG00000031253 I 0.848
ENSLACG00000003608 Latimeria chalumnae ENSLACG00000003608 I 0.848
nkx3.2 Takifugu rubripes ENSTRUG00000014438 I 0.848
ENSSTOG00000021803 Ictidomys tridecemlineatus ENSSTOG00000021803 I 0.848
Nkx3-2 Rattus norvegicus ENSRNOG00000060782 I 0.848
NKX3-2 Procavia capensis ENSPCAG00000013077 I 0.848
ENSSSCG00000024594 Sus scrofa ENSSSCG00000024594 I 0.848
NKX3-2 Dasypus novemcinctus ENSDNOG00000043074 I 0.848
nkx3-1 Danio rerio ENSDARG00000078280 I 0.848
NKX3-2 Canis familiaris ENSCAFG00000015412 I 0.848
BGIBMGA010706 Bombyx mori BGIBMGA010706 I 0.848
ACYPI002893 Acyrthosiphon pisum ACYPI002893 I 0.848
nkx3.2 Danio rerio ENSDARG00000037639 I 0.848
ENSCSAG00000016338 Chlorocebus sabaeus ENSCSAG00000016338 I 0.848
ENSAMXG00000003840 Astyanax mexicanus ENSAMXG00000003840 I 0.848
NKX3-2 Callithrix jacchus ENSCJAG00000012159 I 0.848
NKX3-2 Cavia porcellus ENSCPOG00000005449 I 0.848
ENSGMOG00000018725 Gadus morhua ENSGMOG00000018725 I 0.848
ENSAMEG00000009342 Ailuropoda melanoleuca ENSAMEG00000009342 I 0.848
ENSEEUG00000012691 Erinaceus europaeus ENSEEUG00000012691 I 0.848
NKX3-2 Bos taurus ENSBTAG00000010896 I 0.848
NKX3-2 Homo sapiens ENSG00000109705 D 0.848
NKX3-2 Gorilla gorilla ENSGGOG00000008589 I 0.848
nkx3.2 Gasterosteus aculeatus ENSGACG00000016378 I 0.848
LotgiG60615 Lottia gigantea LotgiG60615 I 0.847
tetur04g08350 Tetranychus urticae tetur04g08350 I 0.847
CPIJ004109 Culex quinquefasciatus CPIJ004109 I 0.846
ASIS007650 Anopheles sinensis ASIS007650 I 0.846
AQUA001538 Anopheles quadriannulatus AQUA001538 I 0.846
AMEM005009 Anopheles merus AMEM005009 I 0.846
AMIN004031 Anopheles minimus AMIN004031 I 0.846
HelroG148616 Helobdella robusta HelroG148616 I 0.846
CpipJ_CPIJ004109 Culex pipiens CpipJ_CPIJ004109 I 0.846
MESCA006298 Megaselia scalaris MESCA006298 I 0.846
MDOA010758 Musca domestica MDOA010758 I 0.846
ASTEI07437 Anopheles stephensi ASTEI07437 I 0.846
AFAF013479 Anopheles farauti AFAF013479 I 0.846
PPAI010327 Phlebotomus papatasi PPAI010327 I 0.846
AMEC017317 Anopheles melas AMEC017317 I 0.846
ACOM028774 Anopheles coluzzii ACOM028774 I 0.846
ACHR006588 Anopheles christyi ACHR006588 I 0.846
AATE016309 Anopheles atroparvus AATE016309 I 0.846
AFUN008966 Anopheles funestus AFUN008966 I 0.846
ACUA019412 Anopheles culicifacies ACUA019412 I 0.846
AEPI001627 Anopheles epiroticus AEPI001627 I 0.846
ADIR005347 Anopheles dirus ADIR005347 I 0.846
AARA010121 Anopheles arabiensis AARA010121 I 0.846
AAEL006597 Aedes aegypti AAEL006597 I 0.846
AMAM011860 Anopheles maculatus AMAM011860 I 0.846
ADAC003526 Anopheles darlingi ADAC003526 I 0.846
AGAP003671 Anopheles gambiae AGAP003671 I 0.846
LCUP000733 Lucilia cuprina LCUP000733 I 0.846
LDEC009723 Leptinotarsa decemlineata LDEC009723 I 0.845
YQE_10102 Dendroctonus ponderosae YQE_10102 I 0.845
TC012743 Tribolium castaneum TC012743 I 0.845
GB47401 Apis mellifera GB47401 I 0.843
Hsal_06436--XP_001120208.1_APIME Harpegnathos saltator Hsal_06436--XP_001120208.1_APIME I 0.843
SINV22315 Solenopsis invicta SINV22315 I 0.843
ACEP23863 Atta cephalotes ACEP23863 I 0.843
NV25828 Nasonia vitripennis NV25828 I 0.843
GA20672 Drosophila pseudoobscura FBgn0080666 I 0.841
bap Drosophila sechellia FBgn0067536 I 0.841
bap Drosophila melanogaster FBgn0004862 D 0.841
GF18600 Drosophila ananassae FBgn0095618 I 0.841
bap Drosophila simulans FBgn0067504 I 0.841
GG24598 Drosophila erecta FBgn0116730 I 0.841
GJ14311 Drosophila virilis FBgn0201526 I 0.841
GL27337 Drosophila persimilis FBgn0164918 I 0.841
GI21951 Drosophila mojavensis FBgn0144680 I 0.841
GH22032 Drosophila grimshawi FBgn0129493 I 0.841
GE25732 Drosophila yakuba FBgn0242790 I 0.841
GK14503 Drosophila willistoni FBgn0216509 I 0.841
RPRC001122 Rhodnius prolixus RPRC001122 I 0.840
CLEC002956 Cimex lectularius CLEC002956 I 0.840
CapteG79432 Capitella teleta CapteG79432 I 0.838
nkx3.2 Tetraodon nigroviridis ENSTNIG00000015732 I 0.838
ENSCING00000007395 Ciona intestinalis ENSCING00000007395 D 0.836
NKX3-1 Erinaceus europaeus ENSEEUG00000001113 I 0.834
ENSACAG00000026683 Anolis carolinensis ENSACAG00000026683 I 0.834
ENSCSAG00000016229 Chlorocebus sabaeus ENSCSAG00000016229 I 0.834
ENSPCAG00000016644 Procavia capensis ENSPCAG00000016644 I 0.834
ENSCPOG00000010557 Cavia porcellus ENSCPOG00000010557 I 0.834
NKX3-1 Callithrix jacchus ENSCJAG00000020092 I 0.834
Nkx3-1 Mus musculus ENSMUSG00000022061 D 0.834
ENSNLEG00000015968 Nomascus leucogenys ENSNLEG00000015968 I 0.834
NKX3-1 Ornithorhynchus anatinus ENSOANG00000008027 I 0.834
ENSAMEG00000002866 Ailuropoda melanoleuca ENSAMEG00000002866 I 0.834
XP_002932598 Xenopus tropicalis XP_002932598 I 0.834
nkx3-1.S Xenopus laevis XB-GENE-6252708 I 0.834
Myotis_brandtii_NKX3_10014306 Myotis brandtii Myotis_brandtii_NKX3_10014306 I 0.834
NKX3-1 Otolemur garnettii ENSOGAG00000001303 I 0.834
NKX3-1 Dasypus novemcinctus ENSDNOG00000044451 I 0.834
nkx3-1.L Xenopus laevis XB-GENE-479031 I 0.834
NKX3-1 Ochotona princeps ENSOPRG00000003179 I 0.834
NKX3-1 Oryctolagus cuniculus ENSOCUG00000004294 I 0.834
ENSOARG00000010071 Ovis aries ENSOARG00000010071 I 0.834
ENSPPYG00000018442 Pongo abelii ENSPPYG00000018442 I 0.834
ENSBTAP00000001615-D1 Bos grunniens ENSBTAP00000001615-D1 I 0.834
ENSP00000370253 Macaca fascicularis ENSP00000370253 I 0.834
ENSPANG00000004934 Papio anubis ENSPANG00000004934 I 0.834
ENSPSIG00000017342 Pelodiscus sinensis ENSPSIG00000017342 I 0.834
ENSTBEG00000002319 Tupaia belangeri ENSTBEG00000002319 I 0.834
NKX3-1 Microcebus murinus ENSMICG00000011189 I 0.834
ENSSSCG00000028216 Sus scrofa ENSSSCG00000028216 I 0.834
ENSSHAG00000015475 Sarcophilus harrisii ENSSHAG00000015475 I 0.834
NKX3-1 Bos taurus ENSBTAG00000001221 I 0.834
NKX3-1 Gorilla gorilla ENSGGOG00000014369 I 0.834
ENSTSYG00000007109 Tarsius syrichta ENSTSYG00000007109 I 0.834
ENSCAFG00000009107 Canis familiaris ENSCAFG00000009107 I 0.834
NKX3-1 Vicugna pacos ENSVPAG00000004503 I 0.834
NKX3-1 Loxodonta africana ENSLAFG00000008941 I 0.834
ENSMPUG00000003418 Mustela putorius furo ENSMPUG00000003418 I 0.834
ENSSARG00000001895 Sorex araneus ENSSARG00000001895 I 0.834
NKX3-1 Macaca mulatta ENSMMUG00000009796 I 0.834
NKX3-1 Pan troglodytes ENSPTRG00000020081 I 0.834
NKX3-1 Monodelphis domestica ENSMODG00000016789 I 0.834
NKX3-1 Echinops telfairi ENSETEG00000018790 I 0.834
ENSCHOG00000011132 Choloepus hoffmanni ENSCHOG00000011132 I 0.834
ENSECAG00000001509 Equus caballus ENSECAG00000001509 I 0.834
Nkx3-1 Rattus norvegicus ENSRNOG00000015477 I 0.834
NKX3-1 Myotis lucifugus ENSMLUG00000006118 I 0.834
NKX3-1 Pteropus vampyrus ENSPVAG00000005378 I 0.834
NKX3-1 Homo sapiens ENSG00000167034 D 0.834
ENSGMOG00000005518 Gadus morhua ENSGMOG00000005518 I 0.832
ENSLOCG00000015015 Lepisosteus oculatus ENSLOCG00000015015 I 0.832
nkx3-1 Gasterosteus aculeatus ENSGACG00000010776 I 0.832
ENSFALG00000011121 Ficedula albicollis ENSFALG00000011121 I 0.832
ENSONIG00000011762 Oreochromis niloticus ENSONIG00000011762 I 0.832
nkx3-1 Oryzias latipes ENSORLG00000010925 I 0.832
ENSPFOG00000009654 Poecilia formosa ENSPFOG00000009654 I 0.832
ENSAMXG00000024837 Astyanax mexicanus ENSAMXG00000024837 I 0.832
ENSAPLG00000014690 Anas platyrhynchos ENSAPLG00000014690 I 0.832
ENSP00000371875 Macaca fascicularis ENSP00000371875 I 0.832
ENSXMAG00000020262 Xiphophorus maculatus ENSXMAG00000020262 I 0.832
SMU15003549 Schmidtea mediterranea SMU15003549 I 0.812
PXEA_0003190801 Protopolystoma xenopodis PXEA_0003190801 I 0.808
SMTD_0000549701 Schistosoma mattheei SMTD_0000549701 I 0.806
SMRZ_0000016501 Schistosoma margrebowiei SMRZ_0000016501 I 0.806
csin109461 Clonorchis sinensis csin109461 I 0.806
Smp_140730 Schistosoma mansoni Smp_140730 I 0.806
A_02450 Schistosoma haematobium A_02450 I 0.806
BGLB010692 Biomphalaria glabrata BGLB010692 I 0.805
TCLT_0000478201 Thelazia callipaeda TCLT_0000478201 I 0.738
ENSONIG00000018347 Oreochromis niloticus ENSONIG00000018347 I 0.722
Aan_R009530 Calypte anna Aan_R009530 I 0.714
ENSTTRG00000012332 Tursiops truncatus ENSTTRG00000012332 I 0.695
D915_02578 Fasciola hepatica D915_02578 I 0.693
MCOS_0000074801 Mesocestoides corti MCOS_0000074801 I 0.676
HelroG138724 Helobdella robusta HelroG138724 I 0.667
ENSAMXG00000009415 Astyanax mexicanus ENSAMXG00000009415 I 0.646
TASK_0000475201 Taenia asiatica TASK_0000475201 I 0.640
TsM_000540100 Taenia solium TsM_000540100 I 0.640
TTAC_0000184701 Hydatigera taeniaeformis TTAC_0000184701 I 0.640
ECANG7_00763 Echinococcus canadensis ECANG7_00763 I 0.640
EmuJ_000895600 Echinococcus multilocularis EmuJ_000895600 I 0.640
TTRE_0000463801 Trichuris trichiura TTRE_0000463801 I 0.629
D918_06873 Trichuris suis D918_06873 I 0.629
L893_g18140 Steinernema glaseri L893_g18140 I 0.628
ASIM_0001224701 Anisakis simplex ASIM_0001224701 I 0.628
BTMF_0000772101 Brugia timori BTMF_0000772101 I 0.625
nLs.2.1.2.g07743 Litomosoides sigmodontis nLs.2.1.2.g07743 I 0.623
hlx Ciona intestinalis ENSCING00000019191 I 0.619
NKX2-6 Equus caballus ENSECAG00000013714 I 0.617
NKX2-6 Pteropus vampyrus ENSPVAG00000005380 I 0.617
NKX2-6 Canis familiaris ENSCAFG00000024691 I 0.617
Minc11316 Meloidogyne incognita Minc11316 I 0.613
WUBG_10043 Wuchereria bancrofti WUBG_10043 I 0.611
ENSTGUG00000004550 Taeniopygia guttata ENSTGUG00000004550 I 0.610
ENSXMAG00000005680 Xiphophorus maculatus ENSXMAG00000005680 I 0.607
ENSPFOG00000009440 Poecilia formosa ENSPFOG00000009440 I 0.607
ENSAMXG00000015414 Astyanax mexicanus ENSAMXG00000015414 I 0.607
NKX2-3 Takifugu rubripes ENSTRUG00000003800 I 0.607
NKX2-3 Takifugu rubripes ENSTRUG00000002729 I 0.607
ENSONIG00000000279 Oreochromis niloticus ENSONIG00000000279 I 0.607
A_06201 Schistosoma haematobium A_06201 I 0.603
tetur22g00030 Tetranychus urticae tetur22g00030 I 0.599