ENSAMXG00000017707 (Astyanax mexicanus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSAMXG00000017707 T207196_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Irx3
M00453_2.00
Mus musculus
NNDACAHNNN

NNNDTGTHNN
PBM
Berger et al.(2008)
Irx3_0920
0.867 0.982
Irx3
M00454_2.00
Mus musculus
NNDACWHN

NDWGTHNN
PBM
Berger et al.(2008)
Irx3_2226
0.867 0.982
Irx3
M03266_2.00
Mus musculus
WWTKTCATGTWR

YWACATGAMAWW
SELEX
Jolma et al.(2013)
Irx3_1
0.867 0.982
IRX1
M05283_2.00
Homo sapiens
DDCRHNNNNNNNNDYGHH

DDCRHNNNNNNNNDYGHH
SELEX
Yin et al.(2017)
IRX1_eDBD_HT-SELEX
0.867 0.982
IRX3
M05319_2.00
Homo sapiens
DACAHGNWWWWNCDTGTH

DACAHGNWWWWNCDTGTH
SELEX
Yin et al.(2017)
IRX3_eDBD_HT-SELEX
0.867 0.982
IRX1
M05284_2.00
Homo sapiens
NNCRHNNNNNNNNDYVHN

NDBRHNNNNNNNNDYGNN
SELEX
Yin et al.(2017)
IRX1_eDBD_Methyl-HT-SELEX
0.867 0.982
IRX3
M05320_2.00
Homo sapiens
DACRYRHNWWNDYKCGTW

WACGMRHNWWNDYRYGTH
SELEX
Yin et al.(2017)
IRX3_eDBD_Methyl-HT-SELEX
0.867 0.982
mirr
M06514_2.00
Drosophila melanogaster
WWACA

TGTWW
B1H
Mathelier et al.(2014)
MA0233.1
0.834 0.930
mirr
M06305_2.00
Drosophila melanogaster
NDNWWACA

TGTWWNHN
B1H
Zhu et al.(2011)
Mirr_Cell_FBgn0014343
0.834 0.930
mirr
M06306_2.00
Drosophila melanogaster
DDWACA

TGTWHH
B1H
Zhu et al.(2011)
Mirr_SOLEXA_FBgn0014343
0.834 0.930
SNAPOd2T00005194001
M02229_2.00
Oikopleura dioica
NNTACATGTDN

NHACATGTANN
PBM
Weirauch et al.(2014)
pTH5976
0.810 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMXP00000018240 Homeodomain 100 156

Links

Other Homeodomain family TFs
Other Astyanax mexicanus TFs

289 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.J24394 Panicum virgatum Pavir.J24394 N 0.000
Si036757m.g Setaria italica Si036757m.g N 0.000
Si006994m.g Setaria italica Si006994m.g N 0.000
Sb10g030770 Sorghum bicolor Sb10g030770 N 0.000
PRUPE_ppa009455mg Prunus persica PRUPE_ppa009455mg N 0.000
OS06G0726300 Oryza sativa OS06G0726300 N 0.000
OS03G0133000 Oryza sativa OS03G0133000 N 0.000
ORUFI06G29930 Oryza rufipogon ORUFI06G29930 N 0.000
ORUFI03G02380 Oryza rufipogon ORUFI03G02380 N 0.000
ORGLA06G0236900 Oryza glaberrima ORGLA06G0236900 N 0.000
ORGLA03G0024300 Oryza glaberrima ORGLA03G0024300 N 0.000
Traes_4BL_27B9E4CE6 Triticum aestivum Traes_4BL_27B9E4CE6 N 0.000
Traes_4DL_7CB8EC5A8 Triticum aestivum Traes_4DL_7CB8EC5A8 N 0.000
Pavir.Ia04458 Panicum virgatum Pavir.Ia04458 N 0.000
MDP0000868556 Malus domestica MDP0000868556 N 0.000
MDP0000480581 Malus domestica MDP0000480581 N 0.000
gene17203-v1.0-hybrid Fragaria vesca gene17203-v1.0-hybrid N 0.000
cassava13355.valid.m1 Manihot esculenta cassava13355.valid.m1 N 0.000
Pm020961 Prunus mume Pm020961 N 0.000
TRIUR3_33949 Triticum urartu TRIUR3_33949 N 0.000
TRIUR3_32216 Triticum urartu TRIUR3_32216 N 0.000
TRIUR3_18560 Triticum urartu TRIUR3_18560 N 0.000
Traes_4DL_B29067862 Triticum aestivum Traes_4DL_B29067862 N 0.000
OPUNC06G25510 Oryza punctata OPUNC06G25510 N 0.000
OPUNC03G02420 Oryza punctata OPUNC03G02420 N 0.000
ONIVA06G30950 Oryza nivara ONIVA06G30950 N 0.000
GSMUA_Achr3G14720_001 Musa acuminata GSMUA_Achr3G14720_001 N 0.000
GSMUA_Achr3G00560_001 Musa acuminata GSMUA_Achr3G00560_001 N 0.000
GSMUA_Achr11G01320_001 Musa acuminata GSMUA_Achr11G01320_001 N 0.000
GRMZM2G126817 Zea mays GRMZM2G126817 N 0.000
GRMZM2G074358 Zea mays GRMZM2G074358 N 0.000
GRMZM2G059428 Zea mays GRMZM2G059428 N 0.000
F775_22671 Aegilops tauschii F775_22671 N 0.000
F775_22440 Aegilops tauschii F775_22440 N 0.000
BRADI1G76207 Brachypodium distachyon BRADI1G76207 N 0.000
BGIOSGA020507 Oryza indica BGIOSGA020507 N 0.000
LPERR03G02450 Leersia perrieri LPERR03G02450 N 0.000
LPERR06G23420 Leersia perrieri LPERR06G23420 N 0.000
ONIVA03G02250 Oryza nivara ONIVA03G02250 N 0.000
OMERI06G27920 Oryza meridionalis OMERI06G27920 N 0.000
OMERI03G02480 Oryza meridionalis OMERI03G02480 N 0.000
OLONG_016677 Oryza longistaminata OLONG_016677 N 0.000
OGLUM06G29360 Oryza glumaepatula OGLUM06G29360 N 0.000
OGLUM03G02560 Oryza glumaepatula OGLUM03G02560 N 0.000
OBART03G02630 Oryza barthii OBART03G02630 N 0.000
OBART03G02620 Oryza barthii OBART03G02620 N 0.000
OB03G12640 Oryza brachyantha OB03G12640 N 0.000
MLOC_65456 Hordeum vulgare MLOC_65456 N 0.000
BGIOSGA011514 Oryza indica BGIOSGA011514 N 0.000