ENSCING00000005828 (Ciona intestinalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCING00000005828 T207827_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Six3
M00483_2.00
Mus musculus
NNNAYMN

NKRTNNN
PBM
Berger et al.(2008)
Six3_1732
0.862 0.947
SIX3
M05159_2.00
Homo sapiens
NNYGATABBN

NVVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX
0.862 0.947
SIX3
M10698_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX3_Q6
0.862 0.947
SIX3
M05160_2.00
Homo sapiens
NNYGATABVB

VBVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX
0.862 0.947
Optix
M02124_2.00
Drosophila melanogaster
NNNNNDATMN

NKATHNNNNN
PBM
Weirauch et al.(2014)
pTH5437
0.862 0.912
Optix
M03850_2.00
Drosophila melanogaster
TAATYTAATTA

TAATTARATTA
SELEX
Nitta et al.(2015)
Optix_1
0.862 0.912
Optix
M06526_2.00
Drosophila melanogaster
TGATA

TATCA
B1H
Mathelier et al.(2014)
MA0199.1
0.862 0.912
Optix
M06327_2.00
Drosophila melanogaster
HHVTGATA

TATCABDD
B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360
0.862 0.912
Optix
M06328_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360
0.862 0.912
SIX6
M00326_2.00
Homo sapiens
NNDATMB

VKATHNN
PBM
Barrera et al.(2016)
SIX6_REF
0.861 0.930
Six6
M00169_2.00
Mus musculus
NNAYMNN

NNKRTNN
PBM
Badis et al.(2009)
Six6_2267
0.861 0.930
Six6
M00412_2.00
Mus musculus
NNNTGATAYCN

NGRTATCANNN
PBM
Berger et al.(2008)
Six6_2267
0.861 0.930
six3
M02102_2.00
Oryzias latipes
NNDAYMBNNN

NNNVKRTHNN
PBM
Weirauch et al.(2014)
pTH5928
0.861 0.930
SIX6
M05357_2.00
Homo sapiens
NNYGATASVB

VBSTATCRNN
SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX
0.861 0.930
SIX6
M00325_2.00
Homo sapiens
NNNDATMB

VKATHNNN
PBM
Barrera et al.(2016)
SIX6_H141N
0.861 0.930
SIX6
M05358_2.00
Homo sapiens
VBVYAYCRNN

NNYGRTRBVB
SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX
0.861 0.930
SIX6
M00327_2.00
Homo sapiens
NHDAYMBNN

NNVKRTHDN
PBM
Barrera et al.(2016)
SIX6_T165A
0.855 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000012025 Homeodomain 205 261

Links

Other Homeodomain family TFs
Other Ciona intestinalis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA004701 Oryza indica BGIOSGA004701 N 0.000
BGIOSGA004703 Oryza indica BGIOSGA004703 I 0.000
BGIOSGA004704 Oryza indica BGIOSGA004704 I 0.000
BGIOSGA004705 Oryza indica BGIOSGA004705 I 0.000
BGIOSGA012523 Oryza indica BGIOSGA012523 N 0.000
BGIOSGA012525 Oryza indica BGIOSGA012525 N 0.000
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.000
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.000
BGIOSGA032700 Oryza indica BGIOSGA032700 N 0.000
BGIOSGA034615 Oryza indica BGIOSGA034615 N 0.000
BGIOSGA034616 Oryza indica BGIOSGA034616 N 0.000
BGIOSGA036759 Oryza indica BGIOSGA036759 N 0.000
BGIOSGA036760 Oryza indica BGIOSGA036760 N 0.000
BRADI1G63910 Brachypodium distachyon BRADI1G63910 N 0.000
BRADI2G22230 Brachypodium distachyon BRADI2G22230 I 0.000
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I 0.000
BRADI2G53520 Brachypodium distachyon BRADI2G53520 I 0.000
BRADI4G25717 Brachypodium distachyon BRADI4G25717 N 0.000
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.000
Eucgr.E00850 Eucalyptus grandis Eucgr.E00850 I 0.000
F775_00860 Aegilops tauschii F775_00860 I 0.000
F775_02926 Aegilops tauschii F775_02926 N 0.000
F775_03184 Aegilops tauschii F775_03184 I 0.000
F775_23182 Aegilops tauschii F775_23182 I 0.000
F775_28648 Aegilops tauschii F775_28648 N 0.000
F775_31089 Aegilops tauschii F775_31089 N 0.000
F775_31341 Aegilops tauschii F775_31341 I 0.000
gene32076-v1.0-hybrid Fragaria vesca gene32076-v1.0-hybrid I 0.000
GRMZM2G029292 Zea mays GRMZM2G029292 I 0.000
GRMZM2G030272 Zea mays GRMZM2G030272 N 0.000
GRMZM2G060918 Zea mays GRMZM2G060918 N 0.000
GRMZM2G063216 Zea mays GRMZM2G063216 N 0.000
GRMZM2G065290 Zea mays GRMZM2G065290 I 0.000
GRMZM2G382350 Zea mays GRMZM2G382350 I 0.000
GSMUA_Achr6G05710_001 Musa acuminata GSMUA_Achr6G05710_001 I 0.000
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.000
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.000
LPERR03G13630 Leersia perrieri LPERR03G13630 N 0.000
LPERR05G16150 Leersia perrieri LPERR05G16150 I 0.000
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.000
LPERR10G04210 Leersia perrieri LPERR10G04210 I 0.000
LPERR11G00940 Leersia perrieri LPERR11G00940 N 0.000
LPERR11G00950 Leersia perrieri LPERR11G00950 N 0.000
LPERR12G01060 Leersia perrieri LPERR12G01060 N 0.000
MDP0000146360 Malus domestica MDP0000146360 I 0.000
MDP0000299114 Malus domestica MDP0000299114 I 0.000
MLOC_11088 Hordeum vulgare MLOC_11088 N 0.000
MLOC_34522 Hordeum vulgare MLOC_34522 N 0.000
MLOC_57051 Hordeum vulgare MLOC_57051 I 0.000
MLOC_57764 Hordeum vulgare MLOC_57764 N 0.000
MLOC_68061 Hordeum vulgare MLOC_68061 I 0.000
MTR_5g067700 Medicago truncatula MTR_5g067700 I 0.000
OB01G44140 Oryza brachyantha OB01G44140 I 0.000
OB01G44150 Oryza brachyantha OB01G44150 I 0.000
OB01G44170 Oryza brachyantha OB01G44170 I 0.000
OB03G25300 Oryza brachyantha OB03G25300 N 0.000
OB05G27830 Oryza brachyantha OB05G27830 I 0.000
OB05G27850 Oryza brachyantha OB05G27850 I 0.000
OB05G34020 Oryza brachyantha OB05G34020 I 0.000
OB11G10730 Oryza brachyantha OB11G10730 N 0.000
OB11G10740 Oryza brachyantha OB11G10740 N 0.000
OB12G11010 Oryza brachyantha OB12G11010 N 0.000
OBART01G35280 Oryza barthii OBART01G35280 N 0.000
OBART01G35310 Oryza barthii OBART01G35310 I 0.000
OBART01G35350 Oryza barthii OBART01G35350 I 0.000
OBART01G35380 Oryza barthii OBART01G35380 I 0.000
OBART03G15470 Oryza barthii OBART03G15470 N 0.000
OBART05G20320 Oryza barthii OBART05G20320 N 0.000
OBART05G20330 Oryza barthii OBART05G20330 I 0.000
OBART05G20340 Oryza barthii OBART05G20340 I 0.000
OBART10G05920 Oryza barthii OBART10G05920 N 0.000
OBART11G01070 Oryza barthii OBART11G01070 N 0.000
OBART11G01090 Oryza barthii OBART11G01090 N 0.000
OBART12G00800 Oryza barthii OBART12G00800 N 0.000
OBART12G00820 Oryza barthii OBART12G00820 N 0.000
OGLUM01G39350 Oryza glumaepatula OGLUM01G39350 N 0.000
OGLUM01G39390 Oryza glumaepatula OGLUM01G39390 I 0.000
OGLUM03G15660 Oryza glumaepatula OGLUM03G15660 N 0.000
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.000
OGLUM05G21430 Oryza glumaepatula OGLUM05G21430 N 0.000
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.000
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.000
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.000
OGLUM12G01250 Oryza glumaepatula OGLUM12G01250 N 0.000
OGLUM12G01270 Oryza glumaepatula OGLUM12G01270 N 0.000
OGLUM12G01320 Oryza glumaepatula OGLUM12G01320 N 0.000
OLONG_000628 Oryza longistaminata OLONG_000628 N 0.000
OLONG_000636 Oryza longistaminata OLONG_000636 I 0.000
OLONG_001744 Oryza longistaminata OLONG_001744 N 0.000
OLONG_022888 Oryza longistaminata OLONG_022888 N 0.000
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.000
OLONG_028722 Oryza longistaminata OLONG_028722 N 0.000
OMERI01G32440 Oryza meridionalis OMERI01G32440 N 0.000
OMERI01G32480 Oryza meridionalis OMERI01G32480 I 0.000
OMERI01G32490 Oryza meridionalis OMERI01G32490 I 0.000
OMERI01G32510 Oryza meridionalis OMERI01G32510 I 0.000
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.000
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.000
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.000
OMERI10G04260 Oryza meridionalis OMERI10G04260 N 0.000
OMERI11G01480 Oryza meridionalis OMERI11G01480 N 0.000
OMERI12G00120 Oryza meridionalis OMERI12G00120 N 0.000
ONIVA01G40340 Oryza nivara ONIVA01G40340 I 0.000
ONIVA01G40370 Oryza nivara ONIVA01G40370 I 0.000
ONIVA01G40390 Oryza nivara ONIVA01G40390 I 0.000
ONIVA03G16490 Oryza nivara ONIVA03G16490 N 0.000
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.000
ONIVA05G21450 Oryza nivara ONIVA05G21450 N 0.000
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.000
ONIVA10G05410 Oryza nivara ONIVA10G05410 N 0.000
ONIVA11G01010 Oryza nivara ONIVA11G01010 N 0.000
ONIVA11G01030 Oryza nivara ONIVA11G01030 N 0.000
ONIVA12G00800 Oryza nivara ONIVA12G00800 N 0.000
OPUNC01G34260 Oryza punctata OPUNC01G34260 N 0.000
OPUNC01G34270 Oryza punctata OPUNC01G34270 N 0.000
OPUNC01G34300 Oryza punctata OPUNC01G34300 I 0.000
OPUNC03G15030 Oryza punctata OPUNC03G15030 N 0.000
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.000
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.000
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.000
OPUNC10G05310 Oryza punctata OPUNC10G05310 N 0.000
OPUNC11G00930 Oryza punctata OPUNC11G00930 N 0.000
OPUNC11G00940 Oryza punctata OPUNC11G00940 N 0.000
OPUNC12G00950 Oryza punctata OPUNC12G00950 N 0.000
OPUNC12G00960 Oryza punctata OPUNC12G00960 N 0.000
ORGLA01G0291600 Oryza glaberrima ORGLA01G0291600 N 0.000
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I 0.000
ORGLA01G0291900 Oryza glaberrima ORGLA01G0291900 I 0.000
ORGLA01G0292200 Oryza glaberrima ORGLA01G0292200 I 0.000
ORGLA03G0148400 Oryza glaberrima ORGLA03G0148400 N 0.000
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.000
ORGLA05G0177300 Oryza glaberrima ORGLA05G0177300 N 0.000
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.000
ORGLA10G0049300 Oryza glaberrima ORGLA10G0049300 N 0.000
ORGLA11G0201600 Oryza glaberrima ORGLA11G0201600 N 0.000
ORGLA11G0201700 Oryza glaberrima ORGLA11G0201700 N 0.000
ORGLA12G0007100 Oryza glaberrima ORGLA12G0007100 N 0.000
ORGLA12G0007300 Oryza glaberrima ORGLA12G0007300 N 0.000
ORUFI01G38630 Oryza rufipogon ORUFI01G38630 N 0.000
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I 0.000
ORUFI01G38670 Oryza rufipogon ORUFI01G38670 I 0.000
ORUFI01G38690 Oryza rufipogon ORUFI01G38690 I 0.000
ORUFI03G16080 Oryza rufipogon ORUFI03G16080 N 0.000
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.000
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.000
ORUFI10G06270 Oryza rufipogon ORUFI10G06270 N 0.000
ORUFI11G01010 Oryza rufipogon ORUFI11G01010 N 0.000
ORUFI11G01040 Oryza rufipogon ORUFI11G01040 N 0.000
ORUFI12G01140 Oryza rufipogon ORUFI12G01140 N 0.000
ORUFI12G01160 Oryza rufipogon ORUFI12G01160 N 0.000
OS01G0820400 Oryza sativa OS01G0820400 N 0.000
OS01G0820700 Oryza sativa OS01G0820700 I 0.000
OS01G0821600 Oryza sativa OS01G0821600 I 0.000
OS03G0321700 Oryza sativa OS03G0321700 N 0.000
OS05G0478400 Oryza sativa OS05G0478400 I 0.000
OS05G0478800 Oryza sativa OS05G0478800 I 0.000
OS11G0116900 Oryza sativa OS11G0116900 N 0.000
OS12G0116400 Oryza sativa OS12G0116400 N 0.000
Pavir.Ea03256 Panicum virgatum Pavir.Ea03256 N 0.000
Pavir.Ga01476 Panicum virgatum Pavir.Ga01476 N 0.000
Pavir.Ga02545 Panicum virgatum Pavir.Ga02545 N 0.000
Pavir.Gb01556 Panicum virgatum Pavir.Gb01556 I 0.000
Pavir.Ib01500 Panicum virgatum Pavir.Ib01500 N 0.000
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I 0.000
Pavir.J05812 Panicum virgatum Pavir.J05812 I 0.000
Pavir.J07662 Panicum virgatum Pavir.J07662 I 0.000
Pavir.J16737 Panicum virgatum Pavir.J16737 N 0.000
Pavir.J31578 Panicum virgatum Pavir.J31578 N 0.000
Pavir.J37617 Panicum virgatum Pavir.J37617 N 0.000
Pavir.J41073 Panicum virgatum Pavir.J41073 I 0.000
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I 0.000
PDK_20s1519811g002 Phoenix dactylifera PDK_20s1519811g002 I 0.000
PDK_20s1571901g001 Phoenix dactylifera PDK_20s1571901g001 I 0.000
Pm018401 Prunus mume Pm018401 I 0.000
PRUPE_ppa007708mg Prunus persica PRUPE_ppa007708mg I 0.000
PRUPE_ppa008573mg Prunus persica PRUPE_ppa008573mg I 0.000
Sb01g036870 Sorghum bicolor Sb01g036870 N 0.000
Sb03g038180 Sorghum bicolor Sb03g038180 I 0.000
Sb08g002590 Sorghum bicolor Sb08g002590 N 0.000
Sb08g005080 Sorghum bicolor Sb08g005080 I 0.000
Si005138m.g Setaria italica Si005138m.g N 0.000
Si011007m.g Setaria italica Si011007m.g N 0.000
Si012735m.g Setaria italica Si012735m.g I 0.000
Si026831m.g Setaria italica Si026831m.g N 0.000
Si039519m.g Setaria italica Si039519m.g N 0.000
TRAES3BF001300030CFD_g Triticum aestivum TRAES3BF001300030CFD_g I 0.000
TRAES3BF005100010CFD_g Triticum aestivum TRAES3BF005100010CFD_g I 0.000
TRAES3BF081400030CFD_g Triticum aestivum TRAES3BF081400030CFD_g I 0.000
Traes_1AL_309623B48 Triticum aestivum Traes_1AL_309623B48 N 0.000
Traes_1AL_B24F28600 Triticum aestivum Traes_1AL_B24F28600 I 0.000
Traes_1BL_46340D685 Triticum aestivum Traes_1BL_46340D685 N 0.000
Traes_1BL_B4AFDB663 Triticum aestivum Traes_1BL_B4AFDB663 I 0.000
Traes_1DL_DFE1721E0 Triticum aestivum Traes_1DL_DFE1721E0 N 0.000
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I 0.000
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I 0.000
Traes_4AL_9E0D1CFA6 Triticum aestivum Traes_4AL_9E0D1CFA6 N 0.000
Traes_4AS_70DF607CC Triticum aestivum Traes_4AS_70DF607CC N 0.000
Traes_4BL_A8C6FBEB6 Triticum aestivum Traes_4BL_A8C6FBEB6 N 0.000
Traes_4BS_A6D9EB0E5 Triticum aestivum Traes_4BS_A6D9EB0E5 N 0.000
Traes_4DL_3140A8240 Triticum aestivum Traes_4DL_3140A8240 N 0.000
Traes_4DS_FE38A59D0 Triticum aestivum Traes_4DS_FE38A59D0 N 0.000
TRIUR3_06231 Triticum urartu TRIUR3_06231 N 0.000
TRIUR3_17401 Triticum urartu TRIUR3_17401 I 0.000
TRIUR3_22129 Triticum urartu TRIUR3_22129 N 0.000
TRIUR3_34396 Triticum urartu TRIUR3_34396 I 0.000