ENSCING00000007645 (Ciona intestinalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCING00000007645 T207845_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hnf1b
M00408_2.00 		Mus musculus
NNHWCNNN
NNNGWDNN		 PBM
Berger et al.(2008)
Tcf2_0913 		0.827 0.818
HNF1B
M03245_2.00 		Homo sapiens
GTTAATNATTAAY
RTTAATNATTAAC		 SELEX
Jolma et al.(2013)
HNF1B_1 		0.827 0.818
HNF1B
M03246_2.00 		Homo sapiens
NGTTAATNATTAAYN
NRTTAATNATTAACN		 SELEX
Jolma et al.(2013)
HNF1B_2 		0.827 0.818
HNF1B
M09168_2.00 		Homo sapiens
DGTTAATRATTAACH
DGTTAATYATTAACH		 Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A 		0.827 0.818
Hnf1b
M09179_2.00 		Mus musculus
DGTTAATRATTAACH
DGTTAATYATTAACH		 Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A 		0.827 0.818
HNF1B
M10758_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1B_Q6_01 		0.827 0.818
HNF1B
M10759_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1B_Q6 		0.827 0.818
HNF1B
M10760_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LFA1_Q6 		0.827 0.818
HNF1A
M03150_2.00 		Homo sapiens
NGTTAATNATTAAYN
NRTTAATNATTAACN		 SELEX
Jolma et al.(2013)
HNF1A_1 		0.827 0.800
HNF1A
M09144_2.00 		Homo sapiens
DGTTAATKATTAACH
DGTTAATMATTAACH		 Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C 		0.827 0.800
HNF1A
M10690_2.00 		Homo sapiens
RGTTAATDWTTRMHV
BDKYAAWHATTAACY		 Transfac
Matys et al.(2006)
V$HNF1_01 		0.827 0.800
HNF1A
M10691_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1A_Q4 		0.827 0.800
HNF1A
M10692_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1A_Q5 		0.827 0.800
HNF1A
M10693_2.00 		Homo sapiens
DGBTAATBAWTHAMYWM
KWRKTDAWTVATTAVCH		 Transfac
Matys et al.(2006)
V$HNF1_C 		0.827 0.800
Hnf1a
M00171_2.00 		Mus musculus
HTAAYYNN
NNRRTTAD		 PBM
Badis et al.(2009)
Tcf1_2666 		0.821 0.782
Hnf1a
M00444_2.00 		Mus musculus
HTAAYYNNN
NNNRRTTAD		 PBM
Berger et al.(2008)
Tcf1_2666 		0.821 0.782
Hnf1a
M09191_2.00 		Mus musculus
RGTTAATNWTTDMHN
NDKHAAWNATTAACY		 Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A 		0.821 0.782
Hmbox1
M00419_2.00 		Mus musculus
NNNGWNNN
NNNWCNNN		 PBM
Berger et al.(2008)
Hmbox1_2674 		0.638 0.400
HMBOX1
M03167_2.00 		Homo sapiens
BKTAACTARB
VYTAGTTAMV		 SELEX
Jolma et al.(2013)
HMBOX1_1 		0.638 0.400
HMBOX1
M05180_2.00 		Homo sapiens
BTAACYAGB
VCTRGTTAV		 SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX 		0.638 0.400
HMBOX1
M05181_2.00 		Homo sapiens
NTAACTAGB
VCTAGTTAN		 SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX 		0.638 0.400
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000015667 Homeodomain 78 153

Links

Other Homeodomain family TFs
Other Ciona intestinalis TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_01536 Aspergillus nidulans CADANIAG00008163 D 0.000
CADANGAG00013191 Aspergillus niger CADANGAG00013191 I 0.000
ATEG_04779 Aspergillus terreus CADATEAG00007874 I 0.000
PVAR5_2855 Byssochlamys spectabilis PVAR5_2855 I 0.000
CHGG_05948 Chaetomium globosum CHGG_05948 I 0.000
CTHT_0003390 Chaetomium thermophilum CTHT_0003390 I 0.000
CFIO01_10230 Colletotrichum fioriniae CFIO01_10230 I 0.000
Cob_12403 Colletotrichum orbiculare Cob_12403 I 0.000
fgenesh1_pg.C_scaffold_5000767 Cryphonectria parasitica fgenesh1_pg.C_scaffold_5000767 I 0.000
FFUJ_01033 Fusarium fujikuroi FFUJ_01033 I 0.000
FOXG_00543 Fusarium oxysporum FOXG_00543 I 0.000
FVEG_00971 Fusarium verticillioides FVEG_00971 I 0.000
MYCTH_2297012 Myceliophthora thermophila MYCTH_2297012 I 0.000
ada-1 Neurospora crassa NCU00499 D 0.000
estExt_fgenesh3_kg.C_40162 Neurospora discreta estExt_fgenesh3_kg.C_40162 I 0.000
NEUTE1DRAFT_119203 Neurospora tetrasperma NEUTE1DRAFT_119203 I 0.000
PMAA_009160 Penicillium marneffei PMAA_009160 I 0.000
PDE_06458 Penicillium oxalicum PDE_06458 I 0.000
PFICI_01318 Pestalotiopsis fici PFICI_01318 I 0.000
SPBR_06799 Sporothrix brasiliensis SPBR_06799 I 0.000
HMPREF1624_07612 Sporothrix schenckii HMPREF1624_07612 I 0.000
PMAA_009160 Talaromyces marneffei PMAA_009160 I 0.000
TSTA_058790 Talaromyces stipitatus TSTA_058790 I 0.000
THITE_2112457 Thielavia terrestris THITE_2112457 I 0.000
TRIATDRAFT_182347 Trichoderma atroviride TRIATDRAFT_182347 I 0.000
TRIREDRAFT_73654 Trichoderma reesei TRIREDRAFT_73654 I 0.000
TRIVIDRAFT_212339 Trichoderma virens TRIVIDRAFT_212339 I 0.000
UV8b_4299 Ustilaginoidea virens UV8b_4299 I 0.000