ENSCING00000012835 (Ciona intestinalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCING00000012835 T207858_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Dbx1
M00451_2.00
Mus musculus
WTTAATTA

TAATTAAW
PBM
Berger et al.(2008)
Dbx1_3486
0.862 0.911
Dbx2
M00499_2.00
Mus musculus
NNDTNNN

NNNAHNN
PBM
Berger et al.(2008)
Dbx2_3487
0.826 0.821
Dbx
M02128_2.00
Drosophila melanogaster
WTTAATTA

TAATTAAW
PBM
Weirauch et al.(2014)
pTH6051
0.818 0.857
Dbx
M06550_2.00
Drosophila melanogaster
TTWATKA

TMATWAA
B1H
Mathelier et al.(2014)
MA0174.1
0.818 0.857
Hlx
M00485_2.00
Mus musculus
NNNAWND

HNWTNNN
PBM
Berger et al.(2008)
Hlx1_2350
0.733 0.696
H2.0
M06489_2.00
Drosophila melanogaster
WTWATDA

THATWAW
B1H
Mathelier et al.(2014)
MA0448.1
0.732 0.696
H2.0
M06250_2.00
Drosophila melanogaster
TWWWWDA

THAWWWA
B1H
Zhu et al.(2011)
H2.0_Cell_FBgn0001170
0.732 0.696
H2.0
M06251_2.00
Drosophila melanogaster
WTWATTRN

NYAATWAW
B1H
Zhu et al.(2011)
H2.0_SOLEXA_FBgn0001170
0.732 0.696
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000023789 Homeodomain 113 168

Links

Other Homeodomain family TFs
Other Ciona intestinalis TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI27939 Acyrthosiphon pisum ACYPI27939 I 0.828
ACYPI48371 Acyrthosiphon pisum ACYPI48371 I 0.720
AAEL005974 Aedes aegypti AAEL005974 I 0.822
AAEL012150 Aedes aegypti AAEL012150 I 0.680
ENSAMEG00000010272 Ailuropoda melanoleuca ENSAMEG00000010272 I 0.733
ENSAMEG00000015811 Ailuropoda melanoleuca ENSAMEG00000015811 I 0.826
Alligator_sinensis_CCG013033.1 Alligator sinensis Alligator_sinensis_CCG013033.1 I 0.862
ENSAPLG00000011161 Anas platyrhynchos ENSAPLG00000011161 I 0.826
ENSAPLG00000013752 Anas platyrhynchos ENSAPLG00000013752 I 0.862
DBX1 Anolis carolinensis ENSACAG00000015625 I 0.862
ENSACAG00000015317 Anolis carolinensis ENSACAG00000015317 I 0.608
ENSACAG00000002581 Anolis carolinensis ENSACAG00000002581 I 0.826
AATE018929 Anopheles atroparvus AATE018929 I 0.822
ACOM031223 Anopheles coluzzii ACOM031223 I 0.822
ADIR004110 Anopheles dirus ADIR004110 I 0.734
AFUN003184 Anopheles funestus AFUN003184 I 0.734
AGAP005727 Anopheles gambiae AGAP005727 I 0.822
AMEM006151 Anopheles merus AMEM006151 I 0.822
ASIS013776 Anopheles sinensis ASIS013776 I 0.734
GB42897 Apis mellifera GB42897 I 0.738
GB49362 Apis mellifera GB49362 I 0.828
Afo_R010414 Aptenodytes forsteri Afo_R010414 I 0.862
Afo_R000355 Aptenodytes forsteri Afo_R000355 I 0.826
ENSAMXG00000016737 Astyanax mexicanus ENSAMXG00000016737 I 0.862
ENSAMXG00000014548 Astyanax mexicanus ENSAMXG00000014548 I 0.823
ENSAMXG00000013419 Astyanax mexicanus ENSAMXG00000013419 I 0.733
ENSAMXG00000009415 Astyanax mexicanus ENSAMXG00000009415 I 0.654
ENSAMXG00000012905 Astyanax mexicanus ENSAMXG00000012905 I 0.862
ACEP14997 Atta cephalotes ACEP14997 I 0.738
BGLB013811 Biomphalaria glabrata BGLB013811 I 0.862
BGIBMGA008482 Bombyx mori BGIBMGA008482 I 0.734
ENSBTAP00000003543-D1 Bos grunniens ENSBTAP00000003543-D1 I 0.862
ENSP00000331470-D1 Bos grunniens ENSP00000331470-D1 I 0.826
ENSBTAP00000019352-D1 Bos grunniens ENSBTAP00000019352-D1 I 0.733
HLX Bos taurus ENSBTAG00000014560 I 0.733
DBX2 Bos taurus ENSBTAG00000006635 I 0.826
DBX1 Bos taurus ENSBTAG00000002733 I 0.862
fgenesh2_pg.scaffold_222000058 Branchiostoma floridae fgenesh2_pg.scaffold_222000058 I 0.862
gw.83.80.1 Branchiostoma floridae gw.83.80.1 I 0.755
gw.473.22.1 Branchiostoma floridae gw.473.22.1 I 0.787
Brh_R003637 Buceros rhinoceros Brh_R003637 I 0.826
Brh_R002799 Buceros rhinoceros Brh_R002799 I 0.862
HLX Callithrix jacchus ENSCJAG00000006110 I 0.733
DBX2 Callithrix jacchus ENSCJAG00000013213 I 0.826
DBX1 Callithrix jacchus ENSCJAG00000006734 I 0.862
Aan_R009530 Calypte anna Aan_R009530 I 0.599
Aan_R012348 Calypte anna Aan_R012348 I 0.826
Aan_R006646 Calypte anna Aan_R006646 I 0.862
Cflo_10458--XP_001121170.1_APIME Camponotus floridanus Cflo_10458--XP_001121170.1_APIME I 0.738
HLX Canis familiaris ENSCAFG00000011340 I 0.733
ENSCAFG00000009372 Canis familiaris ENSCAFG00000009372 I 0.826
CapteG220261 Capitella teleta CapteG220261 I 0.862
CapteG173964 Capitella teleta CapteG173964 I 0.733
DBX1 Cavia porcellus ENSCPOG00000019811 I 0.858
HLX Cavia porcellus ENSCPOG00000024028 I 0.733
ENSCPOG00000011069 Cavia porcellus ENSCPOG00000011069 I 0.826
Cmyd_10016425 Chelonia mydas Cmyd_10016425 I 0.862
ENSCSAG00000005115 Chlorocebus sabaeus ENSCSAG00000005115 I 0.862
ENSCSAG00000015879 Chlorocebus sabaeus ENSCSAG00000015879 I 0.733
CLEC011407 Cimex lectularius CLEC011407 I 0.734
hlx Ciona intestinalis ENSCING00000019191 I 0.750
CGI_10013972 Crassostrea gigas CGI_10013972 I 0.733
CGI_10002480 Crassostrea gigas CGI_10002480 I 0.862
KGM_21891 Danaus plexippus KGM_21891 I 0.734
KGM_12383 Danaus plexippus KGM_12383 I 0.834
dbx1b Danio rerio ENSDARG00000001859 I 0.862
hlx1 Danio rerio ENSDARG00000009134 I 0.733
nanog Danio rerio ENSDARG00000075113 I 0.609
dbx1a Danio rerio ENSDARG00000086393 I 0.862
CABZ01093502.1 Danio rerio ENSDARG00000105053 I 0.822
DAPPUDRAFT_37379 Daphnia pulex DAPPUDRAFT_37379 I 0.824
DAPPUDRAFT_53297 Daphnia pulex DAPPUDRAFT_53297 I 0.768
DBX1 Dasypus novemcinctus ENSDNOG00000015450 I 0.862
DBX2 Dasypus novemcinctus ENSDNOG00000046429 I 0.826
HLX Dasypus novemcinctus ENSDNOG00000007014 I 0.733
YQE_05944 Dendroctonus ponderosae YQE_05944 I 0.830
Hlx Dipodomys ordii ENSDORG00000001941 I 0.733
GF20095 Drosophila ananassae FBgn0097102 I 0.818
GF14286 Drosophila ananassae FBgn0091313 I 0.732
GG14836 Drosophila erecta FBgn0107091 I 0.818
GG10151 Drosophila erecta FBgn0102462 I 0.732
GH16166 Drosophila grimshawi FBgn0123637 I 0.818
GH10711 Drosophila grimshawi FBgn0118192 I 0.732
Dbx Drosophila melanogaster FBgn0261723 D 0.818
H2.0 Drosophila melanogaster FBgn0001170 D 0.732
GI13319 Drosophila mojavensis FBgn0136076 I 0.818
GI11292 Drosophila mojavensis FBgn0134053 I 0.732
GL25317 Drosophila persimilis FBgn0162901 I 0.818
GL19089 Drosophila persimilis FBgn0156689 I 0.732
GA11582 Drosophila pseudoobscura FBgn0071633 I 0.818
GA11095 Drosophila pseudoobscura FBgn0071150 I 0.732
GM14459 Drosophila sechellia FBgn0169382 I 0.818
GM17974 Drosophila sechellia FBgn0172881 I 0.732
GD22610 Drosophila simulans FBgn0194011 I 0.732
GJ12089 Drosophila virilis FBgn0199341 I 0.818
GJ12503 Drosophila virilis FBgn0199743 I 0.732
GK12528 Drosophila willistoni FBgn0214538 I 0.818
GK15402 Drosophila willistoni FBgn0217407 I 0.732
GE18959 Drosophila yakuba FBgn0236329 I 0.732
GE21201 Drosophila yakuba FBgn0238476 I 0.818
HLX Equus caballus ENSECAG00000003025 I 0.733
DBX2 Equus caballus ENSECAG00000012695 I 0.826
DBX1 Equus caballus ENSECAG00000019994 I 0.862
ENSEEUG00000006518 Erinaceus europaeus ENSEEUG00000006518 I 0.810
HLX Erinaceus europaeus ENSEEUG00000004973 I 0.733
DBX1 Felis catus ENSFCAG00000028654 I 0.862
HLX Felis catus ENSFCAG00000002974 I 0.686
ENSFALG00000010170 Ficedula albicollis ENSFALG00000010170 I 0.826
ENSFALG00000001676 Ficedula albicollis ENSFALG00000001676 I 0.862
ENSGMOG00000001751 Gadus morhua ENSGMOG00000001751 I 0.733
ENSGMOG00000003244 Gadus morhua ENSGMOG00000003244 I 0.862
ENSGMOG00000009056 Gadus morhua ENSGMOG00000009056 I 0.823
DBX2 Gallus gallus ENSGALG00000009604 I 0.826
DBX1 Gallus gallus ENSGALG00000003965 I 0.862
DBX1 Gasterosteus aculeatus ENSGACG00000014112 I 0.862
ENSGACG00000004000 Gasterosteus aculeatus ENSGACG00000004000 I 0.823
hlx1 Gasterosteus aculeatus ENSGACG00000010057 I 0.733
ENSGACG00000000220 Gasterosteus aculeatus ENSGACG00000000220 I 0.862
Gfo_R004056 Geospiza fortis Gfo_R004056 I 0.826
DBX2 Gorilla gorilla ENSGGOG00000004664 I 0.826
HLX Gorilla gorilla ENSGGOG00000002735 I 0.733
HHAL002166-PA Halyomorpha halys HHAL002166-PA I 0.739
Hsal_11910--XP_001121170.1_APIME Harpegnathos saltator Hsal_11910--XP_001121170.1_APIME I 0.738
HelroG74087 Helobdella robusta HelroG74087 I 0.710
HelroG148518 Helobdella robusta HelroG148518 I 0.765
HLX Homo sapiens ENSG00000136630 I 0.733
DBX2 Homo sapiens ENSG00000185610 I 0.826
DBX1 Homo sapiens ENSG00000109851 I 0.862
ENSSTOG00000006326 Ictidomys tridecemlineatus ENSSTOG00000006326 I 0.733
ENSSTOG00000000232 Ictidomys tridecemlineatus ENSSTOG00000000232 I 0.826
ENSSTOG00000015557 Ictidomys tridecemlineatus ENSSTOG00000015557 I 0.862
ISCW020093 Ixodes scapularis ISCW020093 I 0.828
ENSLACG00000011299 Latimeria chalumnae ENSLACG00000011299 I 0.862
ENSLACG00000008955 Latimeria chalumnae ENSLACG00000008955 I 0.733
ENSLACG00000003968 Latimeria chalumnae ENSLACG00000003968 I 0.823
ENSLOCG00000016392 Lepisosteus oculatus ENSLOCG00000016392 I 0.733
ENSLOCG00000016431 Lepisosteus oculatus ENSLOCG00000016431 I 0.825
ENSLOCG00000004886 Lepisosteus oculatus ENSLOCG00000004886 I 0.862
LDEC019190 Leptinotarsa decemlineata LDEC019190 I 0.644
LotgiG64310 Lottia gigantea LotgiG64310 I 0.862
LotgiG80492 Lottia gigantea LotgiG80492 I 0.765
HLX Loxodonta africana ENSLAFG00000001289 I 0.733
DBX2 Loxodonta africana ENSLAFG00000005006 I 0.826
DBX1 Loxodonta africana ENSLAFG00000007378 I 0.862
LCUP007749 Lucilia cuprina LCUP007749 I 0.732
LLOJ006552 Lutzomyia longipalpis LLOJ006552 I 0.818
ENSP00000331470 Macaca fascicularis ENSP00000331470 I 0.826
ENSMMUG00000022290 Macaca mulatta ENSMMUG00000022290 I 0.826
ENSMEUG00000016510 Macropus eugenii ENSMEUG00000016510 I 0.828
ENSMGAG00000002299 Meleagris gallopavo ENSMGAG00000002299 I 0.862
ENSMGAG00000009614 Meleagris gallopavo ENSMGAG00000009614 I 0.826
ENSMICG00000007764 Microcebus murinus ENSMICG00000007764 I 0.826
ENSMICG00000005919 Microcebus murinus ENSMICG00000005919 I 0.733
HLX Monodelphis domestica ENSMODG00000004664 I 0.733
DBX1 Monodelphis domestica ENSMODG00000009081 I 0.862
DBX2 Monodelphis domestica ENSMODG00000018530 I 0.828
MDOA007091 Musca domestica MDOA007091 I 0.732
MDOA015219 Musca domestica MDOA015219 I 0.818
ENSMPUG00000013914 Mustela putorius furo ENSMPUG00000013914 I 0.862
ENSMPUG00000003954 Mustela putorius furo ENSMPUG00000003954 I 0.733
ENSMPUG00000000372 Mustela putorius furo ENSMPUG00000000372 I 0.826
Dbx1 Mus musculus ENSMUSG00000030507 D 0.862
Hlx Mus musculus ENSMUSG00000039377 D 0.733
Dbx2 Mus musculus ENSMUSG00000045608 D 0.826
Myotis_brandtii_DBX2_10029487 Myotis brandtii Myotis_brandtii_DBX2_10029487 I 0.826
HLX Myotis lucifugus ENSMLUG00000015571 I 0.733
ENSMLUG00000007038 Myotis lucifugus ENSMLUG00000007038 I 0.826
NV18099 Nasonia vitripennis NV18099 I 0.833
NEMVEDRAFT_v1g80365 Nematostella vectensis NEMVEDRAFT_v1g80365 I 0.766
NEMVEDRAFT_v1g100892 Nematostella vectensis NEMVEDRAFT_v1g100892 I 0.766
ENSNLEG00000017924 Nomascus leucogenys ENSNLEG00000017924 I 0.826
ENSNLEG00000013773 Nomascus leucogenys ENSNLEG00000013773 I 0.733
HLX Ochotona princeps ENSOPRG00000011504 I 0.717
Ocbimv22005553m.g Octopus bimaculoides Ocbimv22005553m.g I 0.862
Ogr19305 Ophisaurus gracilis Ogr19305 I 0.733
ENSONIG00000005980 Oreochromis niloticus ENSONIG00000005980 I 0.733
ENSONIG00000012709 Oreochromis niloticus ENSONIG00000012709 I 0.860
ENSONIG00000008764 Oreochromis niloticus ENSONIG00000008764 I 0.823
ENSONIG00000007144 Oreochromis niloticus ENSONIG00000007144 I 0.862
ENSOANG00000001435 Ornithorhynchus anatinus ENSOANG00000001435 I 0.717
ENSOCUG00000022068 Oryctolagus cuniculus ENSOCUG00000022068 I 0.826
DBX1 Oryctolagus cuniculus ENSOCUG00000007615 I 0.862
HLX Oryctolagus cuniculus ENSOCUG00000006015 I 0.733
dbx1b Oryzias latipes ENSORLG00000000807 I 0.862
ENSORLG00000002970 Oryzias latipes ENSORLG00000002970 I 0.823
hlx1 Oryzias latipes ENSORLG00000012055 I 0.733
DBX1 Oryzias latipes ENSORLG00000014512 I 0.862
HLX Otolemur garnettii ENSOGAG00000012065 I 0.733
DBX1 Otolemur garnettii ENSOGAG00000014591 I 0.862
DBX2 Otolemur garnettii ENSOGAG00000008999 I 0.826
ENSOARG00000013206 Ovis aries ENSOARG00000013206 I 0.733
ENSOARG00000008379 Ovis aries ENSOARG00000008379 I 0.862
ENSOARG00000019598 Ovis aries ENSOARG00000019598 I 0.826
HLX Pan troglodytes ENSPTRG00000002004 I 0.733
DBX2 Pan troglodytes ENSPTRG00000004849 I 0.826
ENSPANG00000005953 Papio anubis ENSPANG00000005953 I 0.826
ENSPANG00000010481 Papio anubis ENSPANG00000010481 I 0.733
PHUM365830 Pediculus humanus PHUM365830 I 0.830
PHUM604510 Pediculus humanus PHUM604510 I 0.739
ENSPSIG00000013519 Pelodiscus sinensis ENSPSIG00000013519 I 0.733
ENSPSIG00000012138 Pelodiscus sinensis ENSPSIG00000012138 I 0.862
ENSPSIG00000009557 Pelodiscus sinensis ENSPSIG00000009557 I 0.825
ENSPMAG00000004878 Petromyzon marinus ENSPMAG00000004878 I 0.862
ENSPMAG00000009840 Petromyzon marinus ENSPMAG00000009840 I 0.734
ENSPMAG00000000895 Petromyzon marinus ENSPMAG00000000895 I 0.614
ENSPFOG00000018919 Poecilia formosa ENSPFOG00000018919 I 0.733
ENSPFOG00000009708 Poecilia formosa ENSPFOG00000009708 I 0.609
ENSPFOG00000008292 Poecilia formosa ENSPFOG00000008292 I 0.823
ENSPFOG00000004028 Poecilia formosa ENSPFOG00000004028 I 0.862
ENSPFOG00000014727 Poecilia formosa ENSPFOG00000014727 I 0.862
Pvit_13000 Pogona vitticeps Pvit_13000 I 0.733
Pvit_06412 Pogona vitticeps Pvit_06412 I 0.862
Pvit_11516 Pogona vitticeps Pvit_11516 I 0.824
ENSPPYG00000000202 Pongo abelii ENSPPYG00000000202 I 0.733
ENSPPYG00000004431 Pongo abelii ENSPPYG00000004431 I 0.826
HLX Procavia capensis ENSPCAG00000012295 I 0.733
DBX2 Procavia capensis ENSPCAG00000006299 I 0.826
HLX Pteropus vampyrus ENSPVAG00000004552 I 0.733
Hlx Rattus norvegicus ENSRNOG00000002309 I 0.733
Dbx1 Rattus norvegicus ENSRNOG00000014706 I 0.862
Dbx2 Rattus norvegicus ENSRNOG00000006885 I 0.826
RPRC010617 Rhodnius prolixus RPRC010617 I 0.734
RPRC002486 Rhodnius prolixus RPRC002486 I 0.418
nRc.2.0.1.g17174 Romanomermis culicivorax nRc.2.0.1.g17174 I 0.845
Sakowv30040055m.g Saccoglossus kowalevskii Sakowv30040055m.g I 0.733
Sakowv30044972m.g Saccoglossus kowalevskii Sakowv30044972m.g I 0.862
ENSSHAG00000011774 Sarcophilus harrisii ENSSHAG00000011774 I 0.862
ENSSHAG00000012659 Sarcophilus harrisii ENSSHAG00000012659 I 0.828
ENSSHAG00000012054 Sarcophilus harrisii ENSSHAG00000012054 I 0.733
SMU15032021 Schmidtea mediterranea SMU15032021 I 0.705
SMU15029512 Schmidtea mediterranea SMU15029512 I 0.704
SINV11867 Solenopsis invicta SINV11867 I 0.738
ENSSARG00000007797 Sorex araneus ENSSARG00000007797 I 0.826
SMAR002236 Strigamia maritima SMAR002236 I 0.734
SPU_014802 Strongylocentrotus purpuratus SPU_014802 I 0.733
ENSSSCG00000010830 Sus scrofa ENSSSCG00000010830 I 0.733
DBX1 Sus scrofa ENSSSCG00000013350 I 0.862
DBX2 Taeniopygia guttata ENSTGUG00000006020 I 0.826
DBX1 Taeniopygia guttata ENSTGUG00000015791 I 0.862
hlx1 Takifugu rubripes ENSTRUG00000006753 I 0.733
ENSTRUG00000016696 Takifugu rubripes ENSTRUG00000016696 I 0.823
dbx1b Takifugu rubripes ENSTRUG00000015886 I 0.862
ENSTSYG00000001451 Tarsius syrichta ENSTSYG00000001451 I 0.826
tetur05g09190 Tetranychus urticae tetur05g09190 I 0.816
tetur22g00030 Tetranychus urticae tetur22g00030 I 0.613
DBX1 Tetraodon nigroviridis ENSTNIG00000004855 I 0.861
ENSTNIG00000015979 Tetraodon nigroviridis ENSTNIG00000015979 I 0.823
dbx1b Tetraodon nigroviridis ENSTNIG00000009613 I 0.862
hlx1 Tetraodon nigroviridis ENSTNIG00000016400 I 0.733
TC015146 Tribolium castaneum TC015146 I 0.830
TC008368 Tribolium castaneum TC008368 I 0.739
D917_00900 Trichinella nativa D917_00900 I 0.657
EFV57815 Trichinella spiralis EFV57815 I 0.657
TriadG18102 Trichoplax adhaerens TriadG18102 I 0.856
DBX2 Tupaia belangeri ENSTBEG00000012639 I 0.826
HLX Tupaia belangeri ENSTBEG00000014384 I 0.733
DBX2 Tursiops truncatus ENSTTRG00000003582 I 0.826
Tal_R005491 Tyto alba Tal_R005491 I 0.826
Tal_R010631 Tyto alba Tal_R010631 I 0.862
ENSVPAG00000000460 Vicugna pacos ENSVPAG00000000460 I 0.826
dbx2.L Xenopus laevis XB-GENE-6486281 I 0.836
dbx1.S Xenopus laevis XB-GENE-865351 I 0.862
dbx1 Xenopus tropicalis XB-GENE-480177 I 0.862
hlx Xenopus tropicalis XB-GENE-483226 I 0.733
dbx2 Xenopus tropicalis XB-GENE-481734 I 0.824
ENSXMAG00000017389 Xiphophorus maculatus ENSXMAG00000017389 I 0.733
ENSXMAG00000010186 Xiphophorus maculatus ENSXMAG00000010186 I 0.862
ENSXMAG00000004689 Xiphophorus maculatus ENSXMAG00000004689 I 0.823
ENSXMAG00000006476 Xiphophorus maculatus ENSXMAG00000006476 I 0.862
L798_13412 Zootermopsis nevadensis L798_13412 I 0.739