SIX3 (Callithrix jacchus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCJAG00000000736 T207888_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Six3
M00483_2.00
Mus musculus
NNNAYMN

NKRTNNN
PBM
Berger et al.(2008)
Six3_1732
0.867 1.000
SIX3
M05159_2.00
Homo sapiens
NNYGATABBN

NVVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX
0.867 1.000
SIX3
M10698_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX3_Q6
0.867 1.000
SIX3
M05160_2.00
Homo sapiens
NNYGATABVB

VBVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX
0.867 1.000
Optix
M02124_2.00
Drosophila melanogaster
NNNNNDATMN

NKATHNNNNN
PBM
Weirauch et al.(2014)
pTH5437
0.867 0.947
Optix
M03850_2.00
Drosophila melanogaster
TAATYTAATTA

TAATTARATTA
SELEX
Nitta et al.(2015)
Optix_1
0.867 0.947
Optix
M06526_2.00
Drosophila melanogaster
TGATA

TATCA
B1H
Mathelier et al.(2014)
MA0199.1
0.867 0.947
Optix
M06327_2.00
Drosophila melanogaster
HHVTGATA

TATCABDD
B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360
0.867 0.947
Optix
M06328_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360
0.867 0.947
SIX6
M00326_2.00
Homo sapiens
NNDATMB

VKATHNN
PBM
Barrera et al.(2016)
SIX6_REF
0.865 0.982
Six6
M00169_2.00
Mus musculus
NNAYMNN

NNKRTNN
PBM
Badis et al.(2009)
Six6_2267
0.865 0.982
Six6
M00412_2.00
Mus musculus
NNNTGATAYCN

NGRTATCANNN
PBM
Berger et al.(2008)
Six6_2267
0.865 0.982
SIX6
M05357_2.00
Homo sapiens
NNYGATASVB

VBSTATCRNN
SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX
0.865 0.982
SIX6
M00325_2.00
Homo sapiens
NNNDATMB

VKATHNNN
PBM
Barrera et al.(2016)
SIX6_H141N
0.865 0.982
SIX6
M05358_2.00
Homo sapiens
VBVYAYCRNN

NNYGRTRBVB
SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX
0.865 0.982
six3
M02102_2.00
Oryzias latipes
NNDAYMBNNN

NNNVKRTHNN
PBM
Weirauch et al.(2014)
pTH5928
0.865 0.947
SIX6
M00327_2.00
Homo sapiens
NHDAYMBNN

NNVKRTHDN
PBM
Barrera et al.(2016)
SIX6_T165A
0.859 0.965
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000001262 Homeodomain 206 262
ENSCJAP00000045865 Homeodomain 176 232

Links

Other Homeodomain family TFs
Other Callithrix jacchus TFs

297 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_28648 Aegilops tauschii F775_28648 N 0.000
F775_03183 Aegilops tauschii F775_03183 N 0.000
F775_22564 Aegilops tauschii F775_22564 I 0.000
F775_23182 Aegilops tauschii F775_23182 I 0.000
F775_23296 Aegilops tauschii F775_23296 N 0.000
F775_04954 Aegilops tauschii F775_04954 N 0.000
F775_31089 Aegilops tauschii F775_31089 N 0.000
WRKY63 Arabidopsis thaliana AT1G66600 D 0.000
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.000
Bostr.25993s0129 Boechera stricta Bostr.25993s0129 I 0.000
Bostr.13158s0168 Boechera stricta Bostr.13158s0168 I 0.000
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.000
BRADI4G44360 Brachypodium distachyon BRADI4G44360 I 0.000
BRADI4G25717 Brachypodium distachyon BRADI4G25717 N 0.000
BRADI2G53510 Brachypodium distachyon BRADI2G53510 I 0.000
BRADI2G53500 Brachypodium distachyon BRADI2G53500 N 0.000
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I 0.000
BRADI1G63910 Brachypodium distachyon BRADI1G63910 N 0.000
Bo4g012750 Brassica oleracea Bo4g012750 I 0.000
Bra004586 Brassica rapa Bra004586 I 0.000
Cagra.0050s0059 Capsella grandiflora Cagra.0050s0059 I 0.000
Carubv10023578m.g Capsella rubella Carubv10023578m.g I 0.000
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.000
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.000
evm.TU.contig_32256 Carica papaya evm.TU.contig_32256 I 0.000
Cla021486 Citrullus lanatus Cla021486 I 0.000
Cucsa.259110 Cucumis sativus Cucsa.259110 I 0.000
Eucgr.G03145 Eucalyptus grandis Eucgr.G03145 I 0.000
Eucgr.K01289 Eucalyptus grandis Eucgr.K01289 I 0.000
Gorai.001G155800 Gossypium raimondii Gorai.001G155800 I 0.000
MLOC_6114 Hordeum vulgare MLOC_6114 I 0.000
MLOC_3853 Hordeum vulgare MLOC_3853 N 0.000
MLOC_34522 Hordeum vulgare MLOC_34522 N 0.000
MLOC_34506 Hordeum vulgare MLOC_34506 N 0.000
MLOC_57764 Hordeum vulgare MLOC_57764 N 0.000
LPERR12G01060 Leersia perrieri LPERR12G01060 N 0.000
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.000
LPERR11G00950 Leersia perrieri LPERR11G00950 N 0.000
LPERR10G04210 Leersia perrieri LPERR10G04210 I 0.000
LPERR01G30470 Leersia perrieri LPERR01G30470 N 0.000
LPERR01G30490 Leersia perrieri LPERR01G30490 I 0.000
LPERR03G13630 Leersia perrieri LPERR03G13630 N 0.000
LPERR04G04290 Leersia perrieri LPERR04G04290 I 0.000
LPERR05G16160 Leersia perrieri LPERR05G16160 N 0.000
Lus10014177.g Linum usitatissimum Lus10014177.g I 0.000
MTR_5g067700 Medicago truncatula MTR_5g067700 I 0.000
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.000
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.000
GSMUA_Achr5G08580_001 Musa acuminata GSMUA_Achr5G08580_001 I 0.000
OBART01G35350 Oryza barthii OBART01G35350 I 0.000
OBART03G15470 Oryza barthii OBART03G15470 N 0.000
OBART03G16400 Oryza barthii OBART03G16400 I 0.000
OBART01G35310 Oryza barthii OBART01G35310 I 0.000
OBART11G01090 Oryza barthii OBART11G01090 N 0.000
OBART05G20330 Oryza barthii OBART05G20330 I 0.000
OBART05G20340 Oryza barthii OBART05G20340 I 0.000
OBART12G00820 Oryza barthii OBART12G00820 N 0.000
OBART10G05920 Oryza barthii OBART10G05920 N 0.000
OBART01G35280 Oryza barthii OBART01G35280 N 0.000
OBART05G20320 Oryza barthii OBART05G20320 N 0.000
OB05G27850 Oryza brachyantha OB05G27850 I 0.000
OB01G44130 Oryza brachyantha OB01G44130 I 0.000
OB01G44140 Oryza brachyantha OB01G44140 I 0.000
OB01G44150 Oryza brachyantha OB01G44150 I 0.000
OB03G25300 Oryza brachyantha OB03G25300 N 0.000
OB05G27840 Oryza brachyantha OB05G27840 N 0.000
OB12G11010 Oryza brachyantha OB12G11010 N 0.000
OB11G10740 Oryza brachyantha OB11G10740 N 0.000
ORGLA10G0049300 Oryza glaberrima ORGLA10G0049300 N 0.000
ORGLA12G0007300 Oryza glaberrima ORGLA12G0007300 N 0.000
ORGLA11G0201700 Oryza glaberrima ORGLA11G0201700 N 0.000
ORGLA01G0291600 Oryza glaberrima ORGLA01G0291600 N 0.000
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.000
ORGLA05G0177300 Oryza glaberrima ORGLA05G0177300 N 0.000
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I 0.000
ORGLA01G0291900 Oryza glaberrima ORGLA01G0291900 I 0.000
ORGLA03G0148400 Oryza glaberrima ORGLA03G0148400 N 0.000
OGLUM12G01270 Oryza glumaepatula OGLUM12G01270 N 0.000
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.000
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.000
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.000
OGLUM05G21430 Oryza glumaepatula OGLUM05G21430 N 0.000
OGLUM03G16780 Oryza glumaepatula OGLUM03G16780 I 0.000
OGLUM03G15660 Oryza glumaepatula OGLUM03G15660 N 0.000
OGLUM01G39350 Oryza glumaepatula OGLUM01G39350 N 0.000
BGIOSGA004701 Oryza indica BGIOSGA004701 N 0.000
BGIOSGA004703 Oryza indica BGIOSGA004703 I 0.000
BGIOSGA004704 Oryza indica BGIOSGA004704 I 0.000
BGIOSGA012523 Oryza indica BGIOSGA012523 N 0.000
BGIOSGA012525 Oryza indica BGIOSGA012525 N 0.000
BGIOSGA012571 Oryza indica BGIOSGA012571 I 0.000
BGIOSGA017861 Oryza indica BGIOSGA017861 N 0.000
BGIOSGA032700 Oryza indica BGIOSGA032700 N 0.000
BGIOSGA034615 Oryza indica BGIOSGA034615 N 0.000
BGIOSGA036759 Oryza indica BGIOSGA036759 N 0.000
OLONG_007113 Oryza longistaminata OLONG_007113 N 0.000
OLONG_000628 Oryza longistaminata OLONG_000628 N 0.000
OLONG_001744 Oryza longistaminata OLONG_001744 N 0.000
OLONG_000632 Oryza longistaminata OLONG_000632 N 0.000
OLONG_022888 Oryza longistaminata OLONG_022888 N 0.000
OLONG_024544 Oryza longistaminata OLONG_024544 I 0.000
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.000
OMERI01G32480 Oryza meridionalis OMERI01G32480 I 0.000
OMERI01G32490 Oryza meridionalis OMERI01G32490 I 0.000
OMERI03G14670 Oryza meridionalis OMERI03G14670 I 0.000
OMERI05G18240 Oryza meridionalis OMERI05G18240 N 0.000
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.000
OMERI10G04260 Oryza meridionalis OMERI10G04260 N 0.000
OMERI01G32440 Oryza meridionalis OMERI01G32440 N 0.000
ONIVA11G01030 Oryza nivara ONIVA11G01030 N 0.000
ONIVA03G16490 Oryza nivara ONIVA03G16490 N 0.000
ONIVA01G40370 Oryza nivara ONIVA01G40370 I 0.000
ONIVA01G40340 Oryza nivara ONIVA01G40340 I 0.000
ONIVA05G21450 Oryza nivara ONIVA05G21450 N 0.000
ONIVA03G17390 Oryza nivara ONIVA03G17390 I 0.000
ONIVA10G05410 Oryza nivara ONIVA10G05410 N 0.000
OPUNC10G05310 Oryza punctata OPUNC10G05310 N 0.000
OPUNC01G34260 Oryza punctata OPUNC01G34260 N 0.000
OPUNC01G34270 Oryza punctata OPUNC01G34270 N 0.000
OPUNC01G34280 Oryza punctata OPUNC01G34280 I 0.000
OPUNC03G15030 Oryza punctata OPUNC03G15030 N 0.000
OPUNC05G17990 Oryza punctata OPUNC05G17990 N 0.000
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.000
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.000
OPUNC12G00960 Oryza punctata OPUNC12G00960 N 0.000
OPUNC11G00940 Oryza punctata OPUNC11G00940 N 0.000
ORUFI12G01160 Oryza rufipogon ORUFI12G01160 N 0.000
ORUFI11G01040 Oryza rufipogon ORUFI11G01040 N 0.000
ORUFI05G21590 Oryza rufipogon ORUFI05G21590 N 0.000
ORUFI03G16960 Oryza rufipogon ORUFI03G16960 I 0.000
ORUFI03G16080 Oryza rufipogon ORUFI03G16080 N 0.000
ORUFI01G38670 Oryza rufipogon ORUFI01G38670 I 0.000
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I 0.000
ORUFI01G38630 Oryza rufipogon ORUFI01G38630 N 0.000
OS12G0116400 Oryza sativa OS12G0116400 N 0.000
OS11G0116900 Oryza sativa OS11G0116900 N 0.000
OS03G0335200 Oryza sativa OS03G0335200 I 0.000
OS05G0478700 Oryza sativa OS05G0478700 N 0.000
OS03G0321700 Oryza sativa OS03G0321700 N 0.000
OS01G0820700 Oryza sativa OS01G0820700 I 0.000
OS01G0820400 Oryza sativa OS01G0820400 N 0.000
OSTLU_26580 Ostreococcus lucimarinus OSTLU_26580 I 0.000
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I 0.000
Pavir.Eb03559 Panicum virgatum Pavir.Eb03559 I 0.000
Pavir.Ga01476 Panicum virgatum Pavir.Ga01476 N 0.000
Pavir.Gb01556 Panicum virgatum Pavir.Gb01556 I 0.000
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I 0.000
Pavir.J05812 Panicum virgatum Pavir.J05812 I 0.000
Pavir.J31756 Panicum virgatum Pavir.J31756 I 0.000
Pavir.J37617 Panicum virgatum Pavir.J37617 N 0.000
Pavir.J38024 Panicum virgatum Pavir.J38024 N 0.000
Pavir.Ib01500 Panicum virgatum Pavir.Ib01500 N 0.000
PDK_20s1519811g002 Phoenix dactylifera PDK_20s1519811g002 I 0.000
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I 0.000
SapurV1A.0325s0030 Salix purpurea SapurV1A.0325s0030 I 0.000
Si027946m.g Setaria italica Si027946m.g N 0.000
Si004791m.g Setaria italica Si004791m.g I 0.000
Si027328m.g Setaria italica Si027328m.g N 0.000
Si005138m.g Setaria italica Si005138m.g N 0.000
Si003782m.g Setaria italica Si003782m.g N 0.000
Si002121m.g Setaria italica Si002121m.g I 0.000
Si012735m.g Setaria italica Si012735m.g I 0.000
Si039519m.g Setaria italica Si039519m.g N 0.000
Solyc05g050050.1 Solanum lycopersicum Solyc05g050050.1 I 0.000
Sb05g001220 Sorghum bicolor Sb05g001220 N 0.000
Sb01g036870 Sorghum bicolor Sb01g036870 N 0.000
Sb03g038170 Sorghum bicolor Sb03g038170 I 0.000
Sb03g038190 Sorghum bicolor Sb03g038190 N 0.000
Sb03g038180 Sorghum bicolor Sb03g038180 I 0.000
Sb03g038200 Sorghum bicolor Sb03g038200 N 0.000
Sb08g002590 Sorghum bicolor Sb08g002590 N 0.000
Sb01g036180 Sorghum bicolor Sb01g036180 I 0.000
TCM_005179 Theobroma cacao TCM_005179 I 0.000
TCM_006103 Theobroma cacao TCM_006103 I 0.000
Traes_4DS_FE38A59D0 Triticum aestivum Traes_4DS_FE38A59D0 N 0.000
Traes_4DL_3140A8240 Triticum aestivum Traes_4DL_3140A8240 N 0.000
Traes_4BS_A6D9EB0E5 Triticum aestivum Traes_4BS_A6D9EB0E5 N 0.000
Traes_4BL_A8C6FBEB6 Triticum aestivum Traes_4BL_A8C6FBEB6 N 0.000
Traes_4AL_9E0D1CFA6 Triticum aestivum Traes_4AL_9E0D1CFA6 N 0.000
Traes_4AS_70DF607CC Triticum aestivum Traes_4AS_70DF607CC N 0.000
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I 0.000
Traes_3B_8B0D448D8 Triticum aestivum Traes_3B_8B0D448D8 I 0.000
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I 0.000
TRIUR3_06231 Triticum urartu TRIUR3_06231 N 0.000
TRIUR3_16097 Triticum urartu TRIUR3_16097 N 0.000
TRIUR3_27575 Triticum urartu TRIUR3_27575 I 0.000
GRMZM2G400559 Zea mays GRMZM2G400559 N 0.000
GRMZM2G382350 Zea mays GRMZM2G382350 I 0.000
GRMZM2G065290 Zea mays GRMZM2G065290 I 0.000
GRMZM2G063216 Zea mays GRMZM2G063216 N 0.000
GRMZM2G034421 Zea mays GRMZM2G034421 N 0.000
GRMZM2G030272 Zea mays GRMZM2G030272 N 0.000
GRMZM2G029292 Zea mays GRMZM2G029292 I 0.000
GRMZM2G029282 Zea mays GRMZM2G029282 N 0.000
GRMZM2G005207 Zea mays GRMZM2G005207 I 0.000
GRMZM2G158328 Zea mays GRMZM2G158328 I 0.000