CDX1 (Callithrix jacchus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCJAG00000021069 T208051_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Cdx1
M00427_2.00
Mus musculus
NWWATDRNN

NNYHATWWN
PBM
Berger et al.(2008)
Cdx1_2245
0.867 1.000
CDX1
M03115_2.00
Homo sapiens
NTTTATKRB

VYMATAAAN
SELEX
Jolma et al.(2013)
CDX1_1
0.867 1.000
CDX1
M05018_2.00
Homo sapiens
VKTTTATKRCN

NGYMATAAAMB
SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX
0.867 1.000
CDX1
M09140_2.00
Homo sapiens
HCWTAAAD

HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C
0.867 1.000
Cdx1
M09186_2.00
Mus musculus
HCWTAAAD

HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C
0.867 1.000
CDX1
M10670_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q4
0.867 1.000
CDX1
M10671_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q5
0.867 1.000
CDX1
M05019_2.00
Homo sapiens
NGTCGTAAAWB

VWTTTACGACN
SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX
0.867 1.000
CDX1
M10761_2.00
Gallus gallus
BDBWAAK

MTTWVHV
Transfac
Matys et al.(2006)
V$CDXA_01
0.855 0.965
CDX1
M10762_2.00
Gallus gallus
WWWWMYR

YRKWAWW
Transfac
Matys et al.(2006)
V$CDXA_02
0.855 0.965
CDX2
M03196_2.00
Homo sapiens
KTTTATKRB

VYMATAAAM
SELEX
Jolma et al.(2013)
CDX2_1
0.855 0.947
CDX2
M05248_2.00
Homo sapiens
NDTWAYRRYN

NRYYRTWAHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1
0.855 0.947
CDX2
M05249_2.00
Homo sapiens
NDWWATKRB

VYMATWWHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2
0.855 0.947
CDX2
M08131_2.00
Homo sapiens
YTTTATKRCHB

VDGYMATAAAR
ChIP-seq
Mathelier et al.(2014)
MA0465.1
0.855 0.947
CDX2
M09152_2.00
Homo sapiens
DTTBATKGCHNB

VNDGCMATVAAH
Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A
0.855 0.947
CDX2
M10723_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_01
0.855 0.947
CDX2
M10724_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_02
0.855 0.947
CDX2
M10725_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5
0.855 0.947
CDX2
M10726_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q6
0.855 0.947
CDX2
M05250_2.00
Homo sapiens
NRTCGTAWHBNN

NNVDWTACGAYN
SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX
0.855 0.947
Cdx2
M00447_2.00
Mus musculus
NWWAYDRNN

NNYHRTWWN
PBM
Berger et al.(2008)
Cdx2_4272
0.850 0.947
Cdx2
M09193_2.00
Mus musculus
BTTTATKRCYBY

RVRGYMATAAAV
Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A
0.850 0.947
Cdx2
M09572_2.00
Mus musculus
NTTTTATKRC

GYMATAAAAN
Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586
0.850 0.947
cad
M03780_2.00
Drosophila melanogaster
NKTTTATKRCHB

VDGYMATAAAMN
SELEX
Nitta et al.(2015)
cad_1
0.840 0.860
cad
M03781_2.00
Drosophila melanogaster
NDTTTATKRCHN

NDGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_2
0.840 0.860
cad
M03782_2.00
Drosophila melanogaster
NDTTTATKRCNB

VNGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_3
0.840 0.860
cad
M03783_2.00
Drosophila melanogaster
NNTTTAYGRYNN

NNRYCRTAAANN
SELEX
Nitta et al.(2015)
cad_4
0.840 0.860
cad
M06223_2.00
Drosophila melanogaster
HTTWATTR

YAATWAAD
B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251
0.840 0.860
cad
M06224_2.00
Drosophila melanogaster
RBYVDAAMV

BKTTHBRVY
B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251
0.840 0.860
cad
M06225_2.00
Drosophila melanogaster
NTTWATKR

YMATWAAN
B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251
0.840 0.860
cad
M08420_2.00
Drosophila melanogaster
DTTTTATKRYY

RRYMATAAAAH
ChIP-chip
Mathelier et al.(2014)
MA0216.2
0.840 0.860
cad
M09580_2.00
Drosophila melanogaster
DTTTAYGRYN

NRYCRTAAAH
Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode
0.840 0.860
cad
M09674_2.00
Drosophila melanogaster
HTTTATKRBY

RVYMATAAAD
Misc
Kulakovskiy et al.(2009)
cad
0.840 0.860
cad
M10783_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$CAD_Q6
0.840 0.860
Q70LF3_ARTSF
M02211_2.00
Artemia franciscana
BTAATTAB

VTAATTAV
PBM
Weirauch et al.(2014)
pTH5553
0.834 0.895
Cdx4
M09197_2.00
Mus musculus
WGATTTATDRBH

DVYHATAAATCW
Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A
0.831 0.912
CDX4
M05129_2.00
Homo sapiens
VKTTTATKRCH

DGYMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX
0.831 0.895
CDX4
M05130_2.00
Homo sapiens
BGTCGTAAAHN

NDTTTACGACV
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1
0.831 0.895
CDX4
M05131_2.00
Homo sapiens
VKTTTATKGCN

NGCMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2
0.831 0.895
pal-1
M02183_2.00
Caenorhabditis elegans
GYAATWAA

TTWATTRC
PBM
Weirauch et al.(2014)
pTH6016
0.650 0.719
Q9GP48_9TURB
M02217_2.00
Discocelis tigrina
DTAATTAB

VTAATTAH
PBM
Weirauch et al.(2014)
pTH6515
0.641 0.737
Q24782_9CNID
M02206_2.00
Eleutheria dichotoma
TTAATTAA

TTAATTAA
PBM
Weirauch et al.(2014)
pTH5486
0.613 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000039211 Homeodomain 155 211
ENSCJAP00000042208 Homeodomain 44 100

Links

Other Homeodomain family TFs
Other Callithrix jacchus TFs

318 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL012237 Aedes aegypti AAEL012237 I 0.000
AALB008732 Anopheles albimanus AALB008732 I 0.000
AARA001274 Anopheles arabiensis AARA001274 I 0.000
ACEP16358 Atta cephalotes ACEP16358 I 0.000
ACHR003925 Anopheles christyi ACHR003925 I 0.000
ACOM035641 Anopheles coluzzii ACOM035641 I 0.000
ACUA001438 Anopheles culicifacies ACUA001438 I 0.000
ACYPI005523 Acyrthosiphon pisum ACYPI005523 I 0.000
ADIR006501 Anopheles dirus ADIR006501 I 0.000
AEPI003923 Anopheles epiroticus AEPI003923 I 0.000
AFAF015236 Anopheles farauti AFAF015236 I 0.000
AFUN000621 Anopheles funestus AFUN000621 I 0.000
AGAP003177 Anopheles gambiae AGAP003177 I 0.000
Alligator_sinensis_CCG022139.1 Alligator sinensis Alligator_sinensis_CCG022139.1 I 0.000
AMEC003172 Anopheles melas AMEC003172 I 0.000
AMEM013272 Anopheles merus AMEM013272 I 0.000
AMIN002759 Anopheles minimus AMIN002759 I 0.000
AQUA008115 Anopheles quadriannulatus AQUA008115 I 0.000
ASIS001309 Anopheles sinensis ASIS001309 I 0.000
ASTEI00681 Anopheles stephensi ASTEI00681 I 0.000
BGIBMGA004944 Bombyx mori BGIBMGA004944 I 0.000
Cflo_05278--XP_623530.1_APIME Camponotus floridanus Cflo_05278--XP_623530.1_APIME I 0.000
CLEC011217 Cimex lectularius CLEC011217 I 0.000
Cmyd_10004970 Chelonia mydas Cmyd_10004970 I 0.000
CPIJ003297 Culex quinquefasciatus CPIJ003297 I 0.000
CpipJ_CPIJ003297 Culex pipiens CpipJ_CPIJ003297 I 0.000
ENSAMEG00000003472 Ailuropoda melanoleuca ENSAMEG00000003472 I 0.000
ENSAMXG00000012675 Astyanax mexicanus ENSAMXG00000012675 I 0.000
ENSBTAP00000023939-D1 Bos grunniens ENSBTAP00000023939-D1 I 0.000
ENSCPOG00000010172 Cavia porcellus ENSCPOG00000010172 I 0.000
ENSCSAG00000013429 Chlorocebus sabaeus ENSCSAG00000013429 I 0.000
ENSDNOG00000034422 Dasypus novemcinctus ENSDNOG00000034422 I 0.000
ENSFALG00000001190 Ficedula albicollis ENSFALG00000001190 I 0.000
ENSGALG00000028248 Gallus gallus ENSGALG00000028248 I 0.000
ENSGMOG00000003647 Gadus morhua ENSGMOG00000003647 I 0.000
ENSLACG00000016665 Latimeria chalumnae ENSLACG00000016665 I 0.000
ENSMICG00000013124 Microcebus murinus ENSMICG00000013124 I 0.000
ENSMPUG00000006859 Mustela putorius furo ENSMPUG00000006859 I 0.000
ENSNLEG00000014373 Nomascus leucogenys ENSNLEG00000014373 I 0.000
ENSOARG00000021159 Ovis aries ENSOARG00000021159 I 0.000
ENSP00000351490 Macaca fascicularis ENSP00000351490 I 0.000
ENSPANG00000020361 Papio anubis ENSPANG00000020361 I 0.000
ENSPFOG00000013150 Poecilia formosa ENSPFOG00000013150 I 0.000
ENSPFOG00000017744 Poecilia formosa ENSPFOG00000017744 I 0.000
ENSPPYG00000005911 Pongo abelii ENSPPYG00000005911 I 0.000
ENSPSIG00000009674 Pelodiscus sinensis ENSPSIG00000009674 I 0.000
ENSSHAG00000014285 Sarcophilus harrisii ENSSHAG00000014285 I 0.000
ENSSSCG00000002282 Sus scrofa ENSSSCG00000002282 I 0.000
ENSSTOG00000028142 Ictidomys tridecemlineatus ENSSTOG00000028142 I 0.000
ENSTSYG00000007582 Tarsius syrichta ENSTSYG00000007582 I 0.000
ENSXMAG00000014355 Xiphophorus maculatus ENSXMAG00000014355 I 0.000
GB41968 Apis mellifera GB41968 I 0.000
Hsal_16014--XP_623530.1_APIME Harpegnathos saltator Hsal_16014--XP_623530.1_APIME I 0.000
ISCW013570 Ixodes scapularis ISCW013570 I 0.000
KGM_17406 Danaus plexippus KGM_17406 I 0.000
MAX Gorilla gorilla ENSGGOG00000026047 I 0.000
MAX Canis familiaris ENSCAFG00000016212 I 0.000
MAX Loxodonta africana ENSLAFG00000018437 I 0.000
MAX Choloepus hoffmanni ENSCHOG00000006957 I 0.000
MAX Callithrix jacchus ENSCJAG00000019702 I 0.000
max Xenopus tropicalis XB-GENE-6258209 I 0.000
MAX Echinops telfairi ENSETEG00000002967 I 0.000
max Danio rerio ENSDARG00000024844 I 0.000
max Gasterosteus aculeatus ENSGACG00000007808 I 0.000
MAX Homo sapiens ENSG00000125952 D 0.000
MAX Equus caballus ENSECAG00000006923 I 0.000
MAX Felis catus ENSFCAG00000010347 I 0.000
MAX Erinaceus europaeus ENSEEUG00000003973 I 0.000
MAX Meleagris gallopavo ENSMGAG00000004785 I 0.000
MAX Takifugu rubripes ENSTRUG00000014760 I 0.000
MAX Tetraodon nigroviridis ENSTNIG00000000407 I 0.000
max Tetraodon nigroviridis ENSTNIG00000016412 I 0.000
MAX Pan troglodytes ENSPTRG00000006449 I 0.000
MAX Tursiops truncatus ENSTTRG00000002693 I 0.000
MAX Sorex araneus ENSSARG00000010212 I 0.000
MAX Myotis lucifugus ENSMLUG00000004318 I 0.000
MAX Procavia capensis ENSPCAG00000000840 I 0.000
MAX Oryzias latipes ENSORLG00000016817 I 0.000
MAX Ochotona princeps ENSOPRG00000016245 I 0.000
MAX Oryctolagus cuniculus ENSOCUG00000014439 I 0.000
max Takifugu rubripes ENSTRUG00000017815 I 0.000
MAX Ornithorhynchus anatinus ENSOANG00000005841 I 0.000
Max Mus musculus ENSMUSG00000059436 D 0.000
MAX Monodelphis domestica ENSMODG00000009712 I 0.000
MAX Macaca mulatta ENSMMUG00000004341 I 0.000
Max Rattus norvegicus ENSRNOG00000008049 I 0.000
max.L Xenopus laevis XB-GENE-6252877 I 0.000
max.S Xenopus laevis XB-GENE-6255913 I 0.000
Myotis_brandtii_MAX_10027131 Myotis brandtii Myotis_brandtii_MAX_10027131 I 0.000
NEMVEDRAFT_v1g80696 Nematostella vectensis NEMVEDRAFT_v1g80696 I 0.000
NV15216 Nasonia vitripennis NV15216 I 0.000
Ogr08511 Ophisaurus gracilis Ogr08511 I 0.000
Pvit_16227 Pogona vitticeps Pvit_16227 I 0.000
RPRC015255 Rhodnius prolixus RPRC015255 I 0.000
Sakowv30027986m.g Saccoglossus kowalevskii Sakowv30027986m.g I 0.000
SINV12716 Solenopsis invicta SINV12716 I 0.000
SPU_022163 Strongylocentrotus purpuratus SPU_022163 I 0.000
TriadG51792 Trichoplax adhaerens TriadG51792 I 0.000