CDX1 (Callithrix jacchus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCJAG00000021069 T208051_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Cdx1
M00427_2.00
Mus musculus
NWWATDRNN

NNYHATWWN
PBM
Berger et al.(2008)
Cdx1_2245
0.867 1.000
CDX1
M03115_2.00
Homo sapiens
NTTTATKRB

VYMATAAAN
SELEX
Jolma et al.(2013)
CDX1_1
0.867 1.000
CDX1
M05018_2.00
Homo sapiens
VKTTTATKRCN

NGYMATAAAMB
SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX
0.867 1.000
CDX1
M09140_2.00
Homo sapiens
HCWTAAAD

HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C
0.867 1.000
Cdx1
M09186_2.00
Mus musculus
HCWTAAAD

HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C
0.867 1.000
CDX1
M10670_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q4
0.867 1.000
CDX1
M10671_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q5
0.867 1.000
CDX1
M05019_2.00
Homo sapiens
NGTCGTAAAWB

VWTTTACGACN
SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX
0.867 1.000
CDX1
M10761_2.00
Gallus gallus
BDBWAAK

MTTWVHV
Transfac
Matys et al.(2006)
V$CDXA_01
0.855 0.965
CDX1
M10762_2.00
Gallus gallus
WWWWMYR

YRKWAWW
Transfac
Matys et al.(2006)
V$CDXA_02
0.855 0.965
CDX2
M03196_2.00
Homo sapiens
KTTTATKRB

VYMATAAAM
SELEX
Jolma et al.(2013)
CDX2_1
0.855 0.947
CDX2
M05248_2.00
Homo sapiens
NDTWAYRRYN

NRYYRTWAHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1
0.855 0.947
CDX2
M05249_2.00
Homo sapiens
NDWWATKRB

VYMATWWHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2
0.855 0.947
CDX2
M08131_2.00
Homo sapiens
YTTTATKRCHB

VDGYMATAAAR
ChIP-seq
Mathelier et al.(2014)
MA0465.1
0.855 0.947
CDX2
M09152_2.00
Homo sapiens
DTTBATKGCHNB

VNDGCMATVAAH
Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A
0.855 0.947
CDX2
M10723_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_01
0.855 0.947
CDX2
M10724_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_02
0.855 0.947
CDX2
M10725_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5
0.855 0.947
CDX2
M10726_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q6
0.855 0.947
CDX2
M05250_2.00
Homo sapiens
NRTCGTAWHBNN

NNVDWTACGAYN
SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX
0.855 0.947
Cdx2
M00447_2.00
Mus musculus
NWWAYDRNN

NNYHRTWWN
PBM
Berger et al.(2008)
Cdx2_4272
0.850 0.947
Cdx2
M09193_2.00
Mus musculus
BTTTATKRCYBY

RVRGYMATAAAV
Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A
0.850 0.947
Cdx2
M09572_2.00
Mus musculus
NTTTTATKRC

GYMATAAAAN
Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586
0.850 0.947
cad
M03780_2.00
Drosophila melanogaster
NKTTTATKRCHB

VDGYMATAAAMN
SELEX
Nitta et al.(2015)
cad_1
0.840 0.860
cad
M03781_2.00
Drosophila melanogaster
NDTTTATKRCHN

NDGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_2
0.840 0.860
cad
M03782_2.00
Drosophila melanogaster
NDTTTATKRCNB

VNGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_3
0.840 0.860
cad
M03783_2.00
Drosophila melanogaster
NNTTTAYGRYNN

NNRYCRTAAANN
SELEX
Nitta et al.(2015)
cad_4
0.840 0.860
cad
M06223_2.00
Drosophila melanogaster
HTTWATTR

YAATWAAD
B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251
0.840 0.860
cad
M06224_2.00
Drosophila melanogaster
RBYVDAAMV

BKTTHBRVY
B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251
0.840 0.860
cad
M06225_2.00
Drosophila melanogaster
NTTWATKR

YMATWAAN
B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251
0.840 0.860
cad
M08420_2.00
Drosophila melanogaster
DTTTTATKRYY

RRYMATAAAAH
ChIP-chip
Mathelier et al.(2014)
MA0216.2
0.840 0.860
cad
M09580_2.00
Drosophila melanogaster
DTTTAYGRYN

NRYCRTAAAH
Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode
0.840 0.860
cad
M09674_2.00
Drosophila melanogaster
HTTTATKRBY

RVYMATAAAD
Misc
Kulakovskiy et al.(2009)
cad
0.840 0.860
cad
M10783_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$CAD_Q6
0.840 0.860
Q70LF3_ARTSF
M02211_2.00
Artemia franciscana
BTAATTAB

VTAATTAV
PBM
Weirauch et al.(2014)
pTH5553
0.834 0.895
Cdx4
M09197_2.00
Mus musculus
WGATTTATDRBH

DVYHATAAATCW
Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A
0.831 0.912
CDX4
M05129_2.00
Homo sapiens
VKTTTATKRCH

DGYMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX
0.831 0.895
CDX4
M05130_2.00
Homo sapiens
BGTCGTAAAHN

NDTTTACGACV
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1
0.831 0.895
CDX4
M05131_2.00
Homo sapiens
VKTTTATKGCN

NGCMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2
0.831 0.895
pal-1
M02183_2.00
Caenorhabditis elegans
GYAATWAA

TTWATTRC
PBM
Weirauch et al.(2014)
pTH6016
0.650 0.719
Q9GP48_9TURB
M02217_2.00
Discocelis tigrina
DTAATTAB

VTAATTAH
PBM
Weirauch et al.(2014)
pTH6515
0.641 0.737
Q24782_9CNID
M02206_2.00
Eleutheria dichotoma
TTAATTAA

TTAATTAA
PBM
Weirauch et al.(2014)
pTH5486
0.613 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000039211 Homeodomain 155 211
ENSCJAP00000042208 Homeodomain 44 100

Links

Other Homeodomain family TFs
Other Callithrix jacchus TFs

318 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
16040_YML099C Saccharomyces mikatae 16040_YML099C I 0.000
18194_YML099C Saccharomyces bayanus 18194_YML099C I 0.000
AACERI_AaceriAAL175W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAL175W I 0.000
AGOS_AAL175W Ashbya gossypii AGOS_AAL175W I 0.000
ARG81 Saccharomyces cerevisiae YML099C D 0.000
CAGL0H06875g Candida glabrata CAGL0H06875g I 0.000
CaO19.10262 Candida albicans CaO19.10262 I 0.000
CaO19.2748 Candida albicans CaO19.2748 I 0.000
CD36_42420 Candida dubliniensis CD36_42420 I 0.000
CORT_0E00270 Candida orthopsilosis CORT_0E00270 I 0.000
CPAG_00315 Candida parapsilosis CPAG_00315 I 0.000
CTRG_00138 Candida tropicalis CTRG_00138 I 0.000
DEHA2E16302g Debaryomyces hansenii DEHA2E16302g I 0.000
Ecym_8159 Eremothecium cymbalariae Ecym_8159 I 0.000
e_gww1.1.1.1491.1 Pichia stipitis e_gww1.1.1.1491.1 I 0.000
F503_08421 Ophiostoma piceae uamh F503_08421 I 0.000
G210_1017 Candida maltosa G210_1017 I 0.000
GNLVRS01_PISO0M20692g Millerozyma farinosa GNLVRS01_PISO0M20692g I 0.000
GNLVRS01_PISO0N20935g Millerozyma farinosa GNLVRS01_PISO0N20935g I 0.000
HMPREF1120_05596 Exophiala dermatitidis HMPREF1120_05596 I 0.000
KAFR_0L02130 Kazachstania africana KAFR_0L02130 I 0.000
KLLA0_D10197g Kluyveromyces lactis KLLA0_D10197g I 0.000
KLTH0E16500g Kluyveromyces thermotolerans KLTH0E16500g I 0.000
KLTH0E16500g Lachancea thermotolerans KLTH0E16500g I 0.000
KNAG_0J00210 Kazachstania naganishii KNAG_0J00210 I 0.000
Kpol_455p10 Vanderwaltozyma polyspora Kpol_455p10 I 0.000
Kpol_538p52 Vanderwaltozyma polyspora Kpol_538p52 I 0.000
KUCA_T00006060001 Kuraishia capsulata KUCA_T00006060001 I 0.000
Kwal_9688 Kluyveromyces waltii Kwal_9688 I 0.000
LALA0_S01e00826g Lachancea lanzarotensis LALA0_S01e00826g I 0.000
LELG_04177 Lodderomyces elongisporus LELG_04177 I 0.000
NCAS_0C00220 Naumovozyma castellii NCAS_0C00220 I 0.000
NDAI_0K00150 Naumovozyma dairenensis NDAI_0K00150 I 0.000
PAS_chr2-1_0029 Komagataella pastoris PAS_chr2-1_0029 I 0.000
PGUG_03209 Candida guilliermondii PGUG_03209 I 0.000
PGUG_03209 Meyerozyma guilliermondii PGUG_03209 I 0.000
PICST_51603 Scheffersomyces stipitis PICST_51603 I 0.000
PV09_07428 Verruconis gallopava PV09_07428 I 0.000
PV10_01357 Exophiala mesophila PV10_01357 I 0.000
SAKL0D00264g Lachancea kluyveri SAKL0D00264g I 0.000
Scas_Contig626.6 Saccharomyces castellii Scas_Contig626.6 I 0.000
SKUD_195006 Saccharomyces kudriavzevii SKUD_195006 I 0.000
SPAPADRAFT_69629 Spathaspora passalidarum SPAPADRAFT_69629 I 0.000
SU7_2431 Saccharomyces arboricola SU7_2431 I 0.000
TDEL_0B00480 Torulaspora delbrueckii TDEL_0B00480 I 0.000
TRIATDRAFT_141953 Trichoderma atroviride TRIATDRAFT_141953 I 0.000
XP_002490909.1 Pichia pastoris XP_002490909.1 I 0.000
YALI0_D09647g Yarrowia lipolytica YALI0_D09647g I 0.000
ZBAI_03002 Zygosaccharomyces bailii ZBAI_03002 I 0.000
ZBAI_08687 Zygosaccharomyces bailii ZBAI_08687 I 0.000
ZYRO0A00440g Zygosaccharomyces rouxii ZYRO0A00440g I 0.000