ENSCSAVG00000002486 (Ciona savignyi)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCSAVG00000002486 T208442_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN

NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.745 0.719
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB

VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.745 0.719
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB

VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.745 0.719
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB

VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.745 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000004220 Homeodomain 98 171

Links

Other Homeodomain family TFs
Other Ciona savignyi TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R010756 Calypte anna Aan_R010756 I 0.745
Afo_R011837 Aptenodytes forsteri Afo_R011837 I 0.745
Brh_R012838 Buceros rhinoceros Brh_R012838 I 0.745
CapteG124171 Capitella teleta CapteG124171 I 0.606
Cmyd_10005786 Chelonia mydas Cmyd_10005786 I 0.745
HMBOX1 Anolis carolinensis ENSACAG00000010160 I 0.745
ENSAMEG00000016028 Ailuropoda melanoleuca ENSAMEG00000016028 I 0.745
ENSAMXG00000011241 Astyanax mexicanus ENSAMXG00000011241 I 0.700
ENSAMXG00000018539 Astyanax mexicanus ENSAMXG00000018539 I 0.745
ENSAPLG00000006003 Anas platyrhynchos ENSAPLG00000006003 I 0.745
HMBOX1 Bos taurus ENSBTAG00000010819 I 0.745
HMBOX1 Canis familiaris ENSCAFG00000008237 I 0.745
HMBOX1 Choloepus hoffmanni ENSCHOG00000005538 I 0.745
ENSCING00000003920 Ciona intestinalis ENSCING00000003920 I 0.867
ENSCING00000007645 Ciona intestinalis ENSCING00000007645 I 0.605
HMBOX1 Callithrix jacchus ENSCJAG00000015654 I 0.745
HMBOX1 Cavia porcellus ENSCPOG00000011124 I 0.745
ENSCSAG00000015894 Chlorocebus sabaeus ENSCSAG00000015894 I 0.745
ENSCSAVG00000009827 Ciona savignyi ENSCSAVG00000009827 I 0.605
hnf1a Danio rerio ENSDARG00000009470 I 0.634
hmbox1b Danio rerio ENSDARG00000018913 I 0.744
hmbox1a Danio rerio ENSDARG00000027082 I 0.745
zgc:91944 Danio rerio ENSDARG00000035887 I 0.700
HMBOX1 Dasypus novemcinctus ENSDNOG00000031840 I 0.745
HMBOX1 Equus caballus ENSECAG00000008240 I 0.745
ENSFALG00000010859 Ficedula albicollis ENSFALG00000010859 I 0.745
HMBOX1 Felis catus ENSFCAG00000022672 I 0.745
HMBOX1 Homo sapiens ENSG00000147421 D 0.745
hmbox1b Gasterosteus aculeatus ENSGACG00000004391 I 0.745
zgc:91944 Gasterosteus aculeatus ENSGACG00000009223 I 0.700
hnf1a Gasterosteus aculeatus ENSGACG00000012691 I 0.634
hmbox1a Gasterosteus aculeatus ENSGACG00000014814 I 0.800
HMBOX1 Gallus gallus ENSGALG00000016633 I 0.745
HMBOX1 Gorilla gorilla ENSGGOG00000000860 I 0.745
ENSGMOG00000002742 Gadus morhua ENSGMOG00000002742 I 0.745
ENSGMOG00000004622 Gadus morhua ENSGMOG00000004622 I 0.700
ENSGMOG00000006872 Gadus morhua ENSGMOG00000006872 I 0.740
ENSLACG00000011304 Latimeria chalumnae ENSLACG00000011304 I 0.745
HMBOX1 Loxodonta africana ENSLAFG00000032318 I 0.745
ENSLOCG00000001916 Lepisosteus oculatus ENSLOCG00000001916 I 0.745
ENSLOCG00000015994 Lepisosteus oculatus ENSLOCG00000015994 I 0.745
ENSMEUG00000015023 Macropus eugenii ENSMEUG00000015023 I 0.745
HMBOX1 Myotis lucifugus ENSMLUG00000007478 I 0.745
HMBOX1 Macaca mulatta ENSMMUG00000014981 I 0.745
HMBOX1 Monodelphis domestica ENSMODG00000008788 I 0.745
ENSMPUG00000001070 Mustela putorius furo ENSMPUG00000001070 I 0.745
Hmbox1 Mus musculus ENSMUSG00000021972 D 0.745
ENSNLEG00000016701 Nomascus leucogenys ENSNLEG00000016701 I 0.745
ENSOARG00000015036 Ovis aries ENSOARG00000015036 I 0.745
HMBOX1 Oryctolagus cuniculus ENSOCUG00000017211 I 0.745
HMBOX1 Otolemur garnettii ENSOGAG00000001381 I 0.745
ENSONIG00000001328 Oreochromis niloticus ENSONIG00000001328 I 0.745
ENSONIG00000003040 Oreochromis niloticus ENSONIG00000003040 I 0.801
ENSONIG00000007704 Oreochromis niloticus ENSONIG00000007704 I 0.700
ENSONIG00000011178 Oreochromis niloticus ENSONIG00000011178 I 0.634
hmbox1a Oryzias latipes ENSORLG00000014467 I 0.800
hmbox1b Oryzias latipes ENSORLG00000016242 I 0.745
ENSORLG00000018971 Oryzias latipes ENSORLG00000018971 I 0.650
zgc:91944 Oryzias latipes ENSORLG00000020883 I 0.700
ENSP00000401769 Macaca fascicularis ENSP00000401769 I 0.745
ENSP00000401769-D1 Bos grunniens ENSP00000401769-D1 I 0.745
ENSPANG00000014537 Papio anubis ENSPANG00000014537 I 0.745
HMBOX1 Procavia capensis ENSPCAG00000012005 I 0.745
ENSPFOG00000000843 Poecilia formosa ENSPFOG00000000843 I 0.745
ENSPFOG00000012263 Poecilia formosa ENSPFOG00000012263 I 0.700
ENSPFOG00000013053 Poecilia formosa ENSPFOG00000013053 I 0.634
ENSPFOG00000017886 Poecilia formosa ENSPFOG00000017886 I 0.800
ENSPPYG00000018480 Pongo abelii ENSPPYG00000018480 I 0.745
ENSPSIG00000016826 Pelodiscus sinensis ENSPSIG00000016826 I 0.745
HMBOX1 Pan troglodytes ENSPTRG00000020127 I 0.745
Hmbox1 Rattus norvegicus ENSRNOG00000013326 I 0.745
ENSSHAG00000016211 Sarcophilus harrisii ENSSHAG00000016211 I 0.745
HMBOX1 Sus scrofa ENSSSCG00000009682 I 0.745
HMBOX1 Taeniopygia guttata ENSTGUG00000013324 I 0.745
hnf1a Tetraodon nigroviridis ENSTNIG00000011468 I 0.634
hmbox1a Tetraodon nigroviridis ENSTNIG00000011904 I 0.800
zgc:91944 Tetraodon nigroviridis ENSTNIG00000014025 I 0.700
hmbox1b Takifugu rubripes ENSTRUG00000004378 I 0.745
hmbox1a Takifugu rubripes ENSTRUG00000006366 I 0.800
zgc:91944 Takifugu rubripes ENSTRUG00000012550 I 0.700
hnf1a Takifugu rubripes ENSTRUG00000016222 I 0.634
ENSTSYG00000001109 Tarsius syrichta ENSTSYG00000001109 I 0.745
HMBOX1 Tursiops truncatus ENSTTRG00000015467 I 0.745
ENSXMAG00000001795 Xiphophorus maculatus ENSXMAG00000001795 I 0.745
ENSXMAG00000003472 Xiphophorus maculatus ENSXMAG00000003472 I 0.634
ENSXMAG00000005730 Xiphophorus maculatus ENSXMAG00000005730 I 0.700
ENSXMAG00000011675 Xiphophorus maculatus ENSXMAG00000011675 I 0.800
fgenesh2_pg.scaffold_505000025 Branchiostoma floridae fgenesh2_pg.scaffold_505000025 I 0.737
Gfo_R008926 Geospiza fortis Gfo_R008926 I 0.745
HelroG166133 Helobdella robusta HelroG166133 I 0.609
Myotis_brandtii_HMBOX1_10012332 Myotis brandtii Myotis_brandtii_HMBOX1_10012332 I 0.745
Q4S8E1_TETNG Tetraodon nigroviridis Q4S8E1_TETNG I 0.800
SPU_002791 Strongylocentrotus purpuratus SPU_002791 I 0.679
SPU_022737 Strongylocentrotus purpuratus SPU_022737 I 0.679
TriadG28952 Trichoplax adhaerens TriadG28952 I 0.617
hmbox1.S Xenopus laevis XB-GENE-6078482 I 0.745