ENSCSAVG00000002486 (Ciona savignyi)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCSAVG00000002486 T208442_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN

NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.745 0.719
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB

VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.745 0.719
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB

VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.745 0.719
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB

VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.745 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000004220 Homeodomain 98 171

Links

Other Homeodomain family TFs
Other Ciona savignyi TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_27782 Aegilops tauschii F775_27782 N 0.000
LPERR01G28620 Leersia perrieri LPERR01G28620 N 0.000
OBART01G33150 Oryza barthii OBART01G33150 N 0.000
OB01G42000 Oryza brachyantha OB01G42000 N 0.000
ORGLA01G0271200 Oryza glaberrima ORGLA01G0271200 N 0.000
OGLUM01G37340 Oryza glumaepatula OGLUM01G37340 N 0.000
BGIOSGA000702 Oryza indica BGIOSGA000702 N 0.000
OLONG_014986 Oryza longistaminata OLONG_014986 N 0.000
OMERI01G30050 Oryza meridionalis OMERI01G30050 N 0.000
ONIVA01G37460 Oryza nivara ONIVA01G37460 N 0.000
ORUFI01G36290 Oryza rufipogon ORUFI01G36290 N 0.000
OS01G0780800 Oryza sativa OS01G0780800 N 0.000
Traes_3B_B45DB8F05 Triticum aestivum Traes_3B_B45DB8F05 N 0.000
TRAES3BF022700050CFD_g Triticum aestivum TRAES3BF022700050CFD_g N 0.000
TRAES3BF022800010CFD_g Triticum aestivum TRAES3BF022800010CFD_g N 0.000