six6a (Danio rerio)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSDARG00000025187 T208569_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SIX6
M00326_2.00
Homo sapiens
NNDATMB

VKATHNN
PBM
Barrera et al.(2016)
SIX6_REF
0.867 1.000
Six6
M00169_2.00
Mus musculus
NNAYMNN

NNKRTNN
PBM
Badis et al.(2009)
Six6_2267
0.867 1.000
Six6
M00412_2.00
Mus musculus
NNNTGATAYCN

NGRTATCANNN
PBM
Berger et al.(2008)
Six6_2267
0.867 1.000
SIX6
M05357_2.00
Homo sapiens
NNYGATASVB

VBSTATCRNN
SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX
0.867 1.000
SIX6
M05358_2.00
Homo sapiens
VBVYAYCRNN

NNYGRTRBVB
SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX
0.867 1.000
Six3
M00483_2.00
Mus musculus
NNNAYMN

NKRTNNN
PBM
Berger et al.(2008)
Six3_1732
0.865 0.982
SIX3
M05159_2.00
Homo sapiens
NNYGATABBN

NVVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX
0.865 0.982
SIX3
M10698_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX3_Q6
0.865 0.982
SIX6
M00325_2.00
Homo sapiens
NNNDATMB

VKATHNNN
PBM
Barrera et al.(2016)
SIX6_H141N
0.865 0.982
SIX3
M05160_2.00
Homo sapiens
NNYGATABVB

VBVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX
0.865 0.982
six3
M02102_2.00
Oryzias latipes
NNDAYMBNNN

NNNVKRTHNN
PBM
Weirauch et al.(2014)
pTH5928
0.865 0.947
Optix
M02124_2.00
Drosophila melanogaster
NNNNNDATMN

NKATHNNNNN
PBM
Weirauch et al.(2014)
pTH5437
0.865 0.930
Optix
M03850_2.00
Drosophila melanogaster
TAATYTAATTA

TAATTARATTA
SELEX
Nitta et al.(2015)
Optix_1
0.865 0.930
Optix
M06526_2.00
Drosophila melanogaster
TGATA

TATCA
B1H
Mathelier et al.(2014)
MA0199.1
0.865 0.930
Optix
M06327_2.00
Drosophila melanogaster
HHVTGATA

TATCABDD
B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360
0.865 0.930
Optix
M06328_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360
0.865 0.930
SIX6
M00327_2.00
Homo sapiens
NHDAYMBNN

NNVKRTHDN
PBM
Barrera et al.(2016)
SIX6_T165A
0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000030834 Homeodomain 129 185
ENSDARP00000098430 Homeodomain 129 185

Links

Other Homeodomain family TFs
Other Danio rerio TFs

297 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29729.m002335 Ricinus communis 29729.m002335 I 0.000
29957.m001411 Ricinus communis 29957.m001411 I 0.000
30169.m006340 Ricinus communis 30169.m006340 I 0.000
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.000
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.000
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.000
LBD4 Arabidopsis thaliana AT1G31320 D 0.000
LBD13 Arabidopsis thaliana AT2G30340 D 0.000
LBD15 Arabidopsis thaliana AT2G40470 I 0.000
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.000
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.000
Bo3g024350 Brassica oleracea Bo3g024350 I 0.000
Bo3g034980 Brassica oleracea Bo3g034980 I 0.000
Bo4g012620 Brassica oleracea Bo4g012620 I 0.000
Bo4g059520 Brassica oleracea Bo4g059520 I 0.000
Bo4g172950 Brassica oleracea Bo4g172950 I 0.000
Bo4g190140 Brassica oleracea Bo4g190140 I 0.000
Bo4g190210 Brassica oleracea Bo4g190210 I 0.000
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.000
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.000
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.000
Bra000188 Brassica rapa Bra000188 I 0.000
Bra004572 Brassica rapa Bra004572 I 0.000
Bra016992 Brassica rapa Bra016992 I 0.000
Bra018320 Brassica rapa Bra018320 I 0.000
Bra021627 Brassica rapa Bra021627 I 0.000
Bra022780 Brassica rapa Bra022780 I 0.000
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.000
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.000
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.000
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.000
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.000
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.000
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.000
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.000
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.000
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.000
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.000
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.000
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.000
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.000
Ca_04126 Cicer arietinum Ca_04126 I 0.000
Ca_12420 Cicer arietinum Ca_12420 I 0.000
Ca_12450 Cicer arietinum Ca_12450 I 0.000
Ca_13575 Cicer arietinum Ca_13575 I 0.000
Ca_15642 Cicer arietinum Ca_15642 I 0.000
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.000
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.000
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.000
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.000
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.000
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.000
Cla007391 Citrullus lanatus Cla007391 I 0.000
Cla013678 Citrullus lanatus Cla013678 I 0.000
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.000
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.000
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.000
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.000
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.000
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.000
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.000
F775_25790 Aegilops tauschii F775_25790 I 0.000
F775_52636 Aegilops tauschii F775_52636 I 0.000
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.000
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.000
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.000
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.000
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.000
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.000
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.000
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.000
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.000
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.000
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.000
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.000
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.000
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.000
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.000
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.000
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.000
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.000
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.000
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.000
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.000
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.000
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.000
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.000
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.000
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.000
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.000
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.000
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.000
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.000
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.000
MDP0000121203 Malus domestica MDP0000121203 I 0.000
MDP0000268890 Malus domestica MDP0000268890 I 0.000
MDP0000278334 Malus domestica MDP0000278334 I 0.000
MDP0000284409 Malus domestica MDP0000284409 I 0.000
mgf011471m Mimulus guttatus mgf011471m I 0.000
mgf020556m Mimulus guttatus mgf020556m I 0.000
mgf026046m Mimulus guttatus mgf026046m I 0.000
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.000
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.000
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.000
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.000
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.000
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.000
OB01G44400 Oryza brachyantha OB01G44400 I 0.000
OB05G14280 Oryza brachyantha OB05G14280 I 0.000
OBART01G35680 Oryza barthii OBART01G35680 I 0.000
OBART05G04570 Oryza barthii OBART05G04570 I 0.000
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.000
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.000
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.000
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.000
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.000
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.000
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.000
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.000
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.000
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.000
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.000
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.000
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.000
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.000
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.000
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.000
OS01G0825000 Oryza sativa OS01G0825000 I 0.000
OS05G0165450 Oryza sativa OS05G0165450 I 0.000
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.000
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.000
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.000
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.000
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.000
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.000
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.000
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.000
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.000
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.000
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.000
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.000
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.000
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.000
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.000
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.000
PK11564.1 Cannabis sativa PK11564.1 I 0.000
PK17217.1 Cannabis sativa PK17217.1 I 0.000
Pm000277 Prunus mume Pm000277 I 0.000
Pm011040 Prunus mume Pm011040 I 0.000
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.000
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.000
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.000
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.000
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.000
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.000
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.000
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.000
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.000
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.000
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.000
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.000
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.000
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.000
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.000
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.000
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.000
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.000
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.000
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.000
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.000
Si004575m.g Setaria italica Si004575m.g I 0.000
Si012018m.g Setaria italica Si012018m.g I 0.000
Si026864m.g Setaria italica Si026864m.g I 0.000
Si037583m.g Setaria italica Si037583m.g I 0.000
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.000
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.000
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.000
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.000
TCM_032557 Theobroma cacao TCM_032557 I 0.000
TCM_042262 Theobroma cacao TCM_042262 I 0.000
TCM_045438 Theobroma cacao TCM_045438 I 0.000
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.000
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.000
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.000
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.000
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.000
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.000
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.000
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.000
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.000
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.000
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.000