hmbox1a (Danio rerio)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSDARG00000027082 T208575_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN

NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.862 0.982
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB

VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.862 0.982
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB

VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.862 0.982
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB

VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.862 0.982
Hnf1b
M00408_2.00
Mus musculus
NNHWCNNN

NNNGWDNN
PBM
Berger et al.(2008)
Tcf2_0913
0.638 0.368
Hnf1a
M00171_2.00
Mus musculus
HTAAYYNN

NNRRTTAD
PBM
Badis et al.(2009)
Tcf1_2666
0.638 0.368
Hnf1a
M00444_2.00
Mus musculus
HTAAYYNNN

NNNRRTTAD
PBM
Berger et al.(2008)
Tcf1_2666
0.638 0.368
HNF1A
M03150_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1A_1
0.638 0.368
HNF1B
M03245_2.00
Homo sapiens
GTTAATNATTAAY

RTTAATNATTAAC
SELEX
Jolma et al.(2013)
HNF1B_1
0.638 0.368
HNF1B
M03246_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1B_2
0.638 0.368
HNF1A
M09144_2.00
Homo sapiens
DGTTAATKATTAACH

DGTTAATMATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C
0.638 0.368
HNF1B
M09168_2.00
Homo sapiens
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A
0.638 0.368
Hnf1a
M09191_2.00
Mus musculus
RGTTAATNWTTDMHN

NDKHAAWNATTAACY
Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A
0.638 0.368
Hnf1b
M09179_2.00
Mus musculus
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A
0.638 0.368
HNF1A
M10690_2.00
Homo sapiens
RGTTAATDWTTRMHV

BDKYAAWHATTAACY
Transfac
Matys et al.(2006)
V$HNF1_01
0.638 0.368
HNF1A
M10691_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q4
0.638 0.368
HNF1A
M10692_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q5
0.638 0.368
HNF1B
M10758_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6_01
0.638 0.368
HNF1B
M10759_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6
0.638 0.368
HNF1A
M10693_2.00
Homo sapiens
DGBTAATBAWTHAMYWM

KWRKTDAWTVATTAVCH
Transfac
Matys et al.(2006)
V$HNF1_C
0.638 0.368
HNF1B
M10760_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LFA1_Q6
0.638 0.368
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000037056 Homeodomain 280 351
ENSDARP00000140410 Homeodomain 280 351

Links

Other Homeodomain family TFs
Other Danio rerio TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
hmbox1b Gasterosteus aculeatus ENSGACG00000004391 I 0.867
ENSAMXG00000018539 Astyanax mexicanus ENSAMXG00000018539 I 0.867
ENSONIG00000001328 Oreochromis niloticus ENSONIG00000001328 I 0.867
hmbox1b Takifugu rubripes ENSTRUG00000004378 I 0.867
ENSXMAG00000001795 Xiphophorus maculatus ENSXMAG00000001795 I 0.867
ENSPFOG00000000843 Poecilia formosa ENSPFOG00000000843 I 0.867
hmbox1b Oryzias latipes ENSORLG00000016242 I 0.867
hmbox1b Danio rerio ENSDARG00000018913 I 0.866
ENSFALG00000010859 Ficedula albicollis ENSFALG00000010859 I 0.862
ENSLOCG00000015994 Lepisosteus oculatus ENSLOCG00000015994 I 0.862
HMBOX1 Loxodonta africana ENSLAFG00000032318 I 0.862
HMBOX1 Myotis lucifugus ENSMLUG00000007478 I 0.862
Cmyd_10005786 Chelonia mydas Cmyd_10005786 I 0.862
Aan_R010756 Calypte anna Aan_R010756 I 0.862
ENSMEUG00000015023 Macropus eugenii ENSMEUG00000015023 I 0.862
HMBOX1 Gallus gallus ENSGALG00000016633 I 0.862
HMBOX1 Macaca mulatta ENSMMUG00000014981 I 0.862
HMBOX1 Felis catus ENSFCAG00000022672 I 0.862
Afo_R011837 Aptenodytes forsteri Afo_R011837 I 0.862
Brh_R012838 Buceros rhinoceros Brh_R012838 I 0.862
HMBOX1 Homo sapiens ENSG00000147421 D 0.862
HMBOX1 Gorilla gorilla ENSGGOG00000000860 I 0.862
ENSTSYG00000001109 Tarsius syrichta ENSTSYG00000001109 I 0.862
HMBOX1 Sus scrofa ENSSSCG00000009682 I 0.862
HMBOX1 Procavia capensis ENSPCAG00000012005 I 0.862
ENSPANG00000014537 Papio anubis ENSPANG00000014537 I 0.862
ENSSHAG00000016211 Sarcophilus harrisii ENSSHAG00000016211 I 0.862
ENSPPYG00000018480 Pongo abelii ENSPPYG00000018480 I 0.862
HMBOX1 Pan troglodytes ENSPTRG00000020127 I 0.862
Hmbox1 Rattus norvegicus ENSRNOG00000013326 I 0.862
ENSPSIG00000016826 Pelodiscus sinensis ENSPSIG00000016826 I 0.862
HMBOX1 Taeniopygia guttata ENSTGUG00000013324 I 0.862
HMBOX1 Otolemur garnettii ENSOGAG00000001381 I 0.862
HMBOX1 Equus caballus ENSECAG00000008240 I 0.862
ENSMPUG00000001070 Mustela putorius furo ENSMPUG00000001070 I 0.862
HMBOX1 Monodelphis domestica ENSMODG00000008788 I 0.862
Hmbox1 Mus musculus ENSMUSG00000021972 D 0.862
ENSNLEG00000016701 Nomascus leucogenys ENSNLEG00000016701 I 0.862
HMBOX1 Oryctolagus cuniculus ENSOCUG00000017211 I 0.862
ENSOARG00000015036 Ovis aries ENSOARG00000015036 I 0.862
HMBOX1 Tursiops truncatus ENSTTRG00000015467 I 0.862
ENSGMOG00000006872 Gadus morhua ENSGMOG00000006872 I 0.862
Myotis_brandtii_HMBOX1_10012332 Myotis brandtii Myotis_brandtii_HMBOX1_10012332 I 0.862
ENSAMEG00000016028 Ailuropoda melanoleuca ENSAMEG00000016028 I 0.862
hmbox1.S Xenopus laevis XB-GENE-6078482 I 0.862
ENSCSAG00000015894 Chlorocebus sabaeus ENSCSAG00000015894 I 0.862
HMBOX1 Cavia porcellus ENSCPOG00000011124 I 0.862
HMBOX1 Choloepus hoffmanni ENSCHOG00000005538 I 0.862
HMBOX1 Callithrix jacchus ENSCJAG00000015654 I 0.862
ENSAPLG00000006003 Anas platyrhynchos ENSAPLG00000006003 I 0.862
Gfo_R008926 Geospiza fortis Gfo_R008926 I 0.862
HMBOX1 Canis familiaris ENSCAFG00000008237 I 0.862
HMBOX1 Anolis carolinensis ENSACAG00000010160 I 0.862
ENSP00000401769 Macaca fascicularis ENSP00000401769 I 0.862
HMBOX1 Dasypus novemcinctus ENSDNOG00000031840 I 0.862
HMBOX1 Bos taurus ENSBTAG00000010819 I 0.862
ENSP00000401769-D1 Bos grunniens ENSP00000401769-D1 I 0.862
ENSGMOG00000002742 Gadus morhua ENSGMOG00000002742 I 0.848
ENSLOCG00000001916 Lepisosteus oculatus ENSLOCG00000001916 I 0.823
ENSLACG00000011304 Latimeria chalumnae ENSLACG00000011304 I 0.823
ENSONIG00000003040 Oreochromis niloticus ENSONIG00000003040 I 0.810
Q4S8E1_TETNG Tetraodon nigroviridis Q4S8E1_TETNG I 0.809
hmbox1a Takifugu rubripes ENSTRUG00000006366 I 0.809
ENSXMAG00000011675 Xiphophorus maculatus ENSXMAG00000011675 I 0.809
hmbox1a Tetraodon nigroviridis ENSTNIG00000011904 I 0.809
hmbox1a Gasterosteus aculeatus ENSGACG00000014814 I 0.809
ENSPFOG00000017886 Poecilia formosa ENSPFOG00000017886 I 0.809
hmbox1a Oryzias latipes ENSORLG00000014467 I 0.805
zgc:91944 Danio rerio ENSDARG00000035887 I 0.778
ENSONIG00000007704 Oreochromis niloticus ENSONIG00000007704 I 0.778
zgc:91944 Tetraodon nigroviridis ENSTNIG00000014025 I 0.778
ENSXMAG00000005730 Xiphophorus maculatus ENSXMAG00000005730 I 0.778
zgc:91944 Oryzias latipes ENSORLG00000020883 I 0.778
zgc:91944 Takifugu rubripes ENSTRUG00000012550 I 0.778
ENSPFOG00000012263 Poecilia formosa ENSPFOG00000012263 I 0.778
zgc:91944 Gasterosteus aculeatus ENSGACG00000009223 I 0.778
ENSGMOG00000004622 Gadus morhua ENSGMOG00000004622 I 0.778
ENSAMXG00000011241 Astyanax mexicanus ENSAMXG00000011241 I 0.778
SPU_002791 Strongylocentrotus purpuratus SPU_002791 I 0.745
ENSCING00000003920 Ciona intestinalis ENSCING00000003920 I 0.745
SPU_022737 Strongylocentrotus purpuratus SPU_022737 I 0.745
ENSCSAVG00000002486 Ciona savignyi ENSCSAVG00000002486 I 0.745
fgenesh2_pg.scaffold_505000025 Branchiostoma floridae fgenesh2_pg.scaffold_505000025 I 0.714
ENSORLG00000018971 Oryzias latipes ENSORLG00000018971 I 0.683
ENSXMAG00000003472 Xiphophorus maculatus ENSXMAG00000003472 I 0.683
hnf1a Danio rerio ENSDARG00000009470 I 0.683
hnf1a Takifugu rubripes ENSTRUG00000016222 I 0.683
ENSPFOG00000013053 Poecilia formosa ENSPFOG00000013053 I 0.683
ENSONIG00000011178 Oreochromis niloticus ENSONIG00000011178 I 0.683
hnf1a Gasterosteus aculeatus ENSGACG00000012691 I 0.683
hnf1a Tetraodon nigroviridis ENSTNIG00000011468 I 0.683
HMBOX1 Tupaia belangeri ENSTBEG00000016300 I 0.679
HelroG166133 Helobdella robusta HelroG166133 I 0.672
CapteG124171 Capitella teleta CapteG124171 I 0.672
TriadG28952 Trichoplax adhaerens TriadG28952 I 0.658
SNAPOd2T00002150001 Oikopleura dioica SNAPOd2T00002150001 I 0.646
SPU_010305 Strongylocentrotus purpuratus SPU_010305 I 0.639
Sakowv30011728m.g Saccoglossus kowalevskii Sakowv30011728m.g I 0.639
HNF1A Taeniopygia guttata ENSTGUG00000009673 I 0.638
HNF1A Sus scrofa ENSSSCG00000009919 I 0.638
hnf1a.S Xenopus laevis XB-GENE-865049 I 0.638
HNF1B Sorex araneus ENSSARG00000007152 I 0.638
Hnf1b Rattus norvegicus ENSRNOG00000002598 I 0.638
XP_002939680 Xenopus tropicalis XP_002939680 I 0.638
Hnf1a Rattus norvegicus ENSRNOG00000001183 I 0.638
ENSSHAG00000005052 Sarcophilus harrisii ENSSHAG00000005052 I 0.638
hnf1b.L Xenopus laevis XB-GENE-485656 I 0.638
ENSSTOG00000004719 Ictidomys tridecemlineatus ENSSTOG00000004719 I 0.638
hnf1b.S Xenopus laevis XB-GENE-17330995 I 0.638
hnf1a Xenopus tropicalis XB-GENE-484117 I 0.638
HNF1B Sus scrofa ENSSSCG00000022417 I 0.638
hnf1b Xenopus tropicalis XB-GENE-485652 I 0.638
ENSSTOG00000012440 Ictidomys tridecemlineatus ENSSTOG00000012440 I 0.638
Pvit_13545 Pogona vitticeps Pvit_13545 I 0.638
Alligator_sinensis_CCG002074.1 Alligator sinensis Alligator_sinensis_CCG002074.1 I 0.638
Alligator_sinensis_CCG014136.1 Alligator sinensis Alligator_sinensis_CCG014136.1 I 0.638
Afo_R013605 Aptenodytes forsteri Afo_R013605 I 0.638
Gfo_R012758 Geospiza fortis Gfo_R012758 I 0.638
Aan_R014136 Calypte anna Aan_R014136 I 0.638
Afo_R009049 Aptenodytes forsteri Afo_R009049 I 0.638
Gfo_R010877 Geospiza fortis Gfo_R010877 I 0.638
Brh_R011090 Buceros rhinoceros Brh_R011090 I 0.638
ENSBTAP00000029049-D1 Bos grunniens ENSBTAP00000029049-D1 I 0.638
ENSP00000225893 Macaca fascicularis ENSP00000225893 I 0.638
ENSBTAP00000006184-D1 Bos grunniens ENSBTAP00000006184-D1 I 0.638
Cmyd_10016186 Chelonia mydas Cmyd_10016186 I 0.638
Cmyd_10005161 Chelonia mydas Cmyd_10005161 I 0.638
HNF1B Pteropus vampyrus ENSPVAG00000010466 I 0.638
Aan_R008292 Calypte anna Aan_R008292 I 0.638
ENSTSYG00000010701 Tarsius syrichta ENSTSYG00000010701 I 0.638
Tal_R010417 Tyto alba Tal_R010417 I 0.638
fgenesh2_kg.scaffold_157000001 Branchiostoma floridae fgenesh2_kg.scaffold_157000001 I 0.638
fgenesh2_kg.scaffold_214000001 Branchiostoma floridae fgenesh2_kg.scaffold_214000001 I 0.638
hnf1ba Takifugu rubripes ENSTRUG00000003809 I 0.638
ENSP00000257555 Macaca fascicularis ENSP00000257555 I 0.638
HNF1B Tursiops truncatus ENSTTRG00000015910 I 0.638
Myotis_brandtii_HNF1B_10031016 Myotis brandtii Myotis_brandtii_HNF1B_10031016 I 0.638
Myotis_brandtii_HNF1A_10028127 Myotis brandtii Myotis_brandtii_HNF1A_10028127 I 0.638
ENSXMAG00000011775 Xiphophorus maculatus ENSXMAG00000011775 I 0.638
Ogr03456 Ophisaurus gracilis Ogr03456 I 0.638
Pvit_03697 Pogona vitticeps Pvit_03697 I 0.638
hnf1ba Tetraodon nigroviridis ENSTNIG00000016225 I 0.638
HNF1A Otolemur garnettii ENSOGAG00000009071 I 0.638
HNF1B Equus caballus ENSECAG00000015854 I 0.638
HNF1A Equus caballus ENSECAG00000019954 I 0.638
HNF1B Erinaceus europaeus ENSEEUG00000004998 I 0.638
Hnf1b Dipodomys ordii ENSDORG00000009669 I 0.638
Hnf1a Dipodomys ordii ENSDORG00000007676 I 0.638
hnf1bb Danio rerio ENSDARG00000022295 I 0.638
HNF1A Dasypus novemcinctus ENSDNOG00000000374 I 0.638
HNF1B Dasypus novemcinctus ENSDNOG00000001586 I 0.638
ENSFALG00000005101 Ficedula albicollis ENSFALG00000005101 I 0.638
ENSFALG00000007499 Ficedula albicollis ENSFALG00000007499 I 0.638
HNF1B Gallus gallus ENSGALG00000005504 I 0.638
HNF1A Gallus gallus ENSGALG00000006968 I 0.638
HNF1A Gorilla gorilla ENSGGOG00000004329 I 0.638
hnf1ba Gasterosteus aculeatus ENSGACG00000011101 I 0.638
HNF1B Homo sapiens ENSG00000275410 D 0.638
HNF1B Felis catus ENSFCAG00000000241 I 0.638
HNF1A Felis catus ENSFCAG00000009638 I 0.638
HNF1A Homo sapiens ENSG00000135100 D 0.638
hnf1ba Danio rerio ENSDARG00000006615 I 0.638
ENSCSAVG00000009827 Ciona savignyi ENSCSAVG00000009827 I 0.638
ENSAMXG00000024376 Astyanax mexicanus ENSAMXG00000024376 I 0.638
ENSAPLG00000002580 Anas platyrhynchos ENSAPLG00000002580 I 0.638
HNF1B Bos taurus ENSBTAG00000004710 I 0.638
ENSAMXG00000005661 Astyanax mexicanus ENSAMXG00000005661 I 0.638
ENSAMXG00000004039 Astyanax mexicanus ENSAMXG00000004039 I 0.638
HNF1B Anolis carolinensis ENSACAG00000006458 I 0.638
ENSAMEG00000008387 Ailuropoda melanoleuca ENSAMEG00000008387 I 0.638
ENSAMEG00000013125 Ailuropoda melanoleuca ENSAMEG00000013125 I 0.638
HNF1A Bos taurus ENSBTAG00000021795 I 0.638
HNF1A Canis familiaris ENSCAFG00000010502 I 0.638
HNF1A Cavia porcellus ENSCPOG00000007242 I 0.638
ENSCSAG00000002227 Chlorocebus sabaeus ENSCSAG00000002227 I 0.638
ENSCSAG00000006125 Chlorocebus sabaeus ENSCSAG00000006125 I 0.638
HNF1B Cavia porcellus ENSCPOG00000001234 I 0.638
HNF1B Callithrix jacchus ENSCJAG00000015174 I 0.638
HNF1B Canis familiaris ENSCAFG00000018150 I 0.638
HNF1B Choloepus hoffmanni ENSCHOG00000006010 I 0.638
ENSCING00000007645 Ciona intestinalis ENSCING00000007645 I 0.638
HNF1B Gorilla gorilla ENSGGOG00000006322 I 0.638
ENSGMOG00000001038 Gadus morhua ENSGMOG00000001038 I 0.638
ENSONIG00000013161 Oreochromis niloticus ENSONIG00000013161 I 0.638
HNF1A Ochotona princeps ENSOPRG00000001671 I 0.638
HNF1B Ochotona princeps ENSOPRG00000003933 I 0.638
HNF1B Otolemur garnettii ENSOGAG00000000869 I 0.638
HNF1B Oryctolagus cuniculus ENSOCUG00000003682 I 0.638
HNF1A Ornithorhynchus anatinus ENSOANG00000014646 I 0.638
ENSOARG00000003338 Ovis aries ENSOARG00000003338 I 0.638
ENSOARG00000013764 Ovis aries ENSOARG00000013764 I 0.638
hnf1ba Oryzias latipes ENSORLG00000004564 I 0.638
ENSPANG00000008728 Papio anubis ENSPANG00000008728 I 0.638
ENSPSIG00000013055 Pelodiscus sinensis ENSPSIG00000013055 I 0.638
HNF1A Pan troglodytes ENSPTRG00000005551 I 0.638
HNF1B Pan troglodytes ENSPTRG00000009059 I 0.638
ENSPSIG00000009511 Pelodiscus sinensis ENSPSIG00000009511 I 0.638
ENSPPYG00000008222 Pongo abelii ENSPPYG00000008222 I 0.638
ENSPANG00000022102 Papio anubis ENSPANG00000022102 I 0.638
HNF1B Procavia capensis ENSPCAG00000008147 I 0.638
ENSPFOG00000009496 Poecilia formosa ENSPFOG00000009496 I 0.638
ENSNLEG00000002919 Nomascus leucogenys ENSNLEG00000002919 I 0.638
Hnf1a Mus musculus ENSMUSG00000029556 D 0.638
ENSLOCG00000002874 Lepisosteus oculatus ENSLOCG00000002874 I 0.638
ENSLOCG00000005942 Lepisosteus oculatus ENSLOCG00000005942 I 0.638
ENSMEUG00000004163 Macropus eugenii ENSMEUG00000004163 I 0.638
HNF1A Loxodonta africana ENSLAFG00000017872 I 0.638
HNF1B Loxodonta africana ENSLAFG00000002573 I 0.638
ENSGMOG00000016065 Gadus morhua ENSGMOG00000016065 I 0.638
ENSLACG00000012983 Latimeria chalumnae ENSLACG00000012983 I 0.638
ENSLACG00000017915 Latimeria chalumnae ENSLACG00000017915 I 0.638
HNF1B Meleagris gallopavo ENSMGAG00000008126 I 0.638
HNF1A Meleagris gallopavo ENSMGAG00000008538 I 0.638
ENSMPUG00000003290 Mustela putorius furo ENSMPUG00000003290 I 0.638
ENSMPUG00000015004 Mustela putorius furo ENSMPUG00000015004 I 0.638
Hnf1b Mus musculus ENSMUSG00000020679 D 0.638
HNF1B Monodelphis domestica ENSMODG00000019108 I 0.638
HNF1A Monodelphis domestica ENSMODG00000002966 I 0.638
HNF1A Myotis lucifugus ENSMLUG00000009109 I 0.638
HNF1B Myotis lucifugus ENSMLUG00000012260 I 0.638
HNF1B Macaca mulatta ENSMMUG00000003431 I 0.638
HNF1A Pteropus vampyrus ENSPVAG00000008044 I 0.638