zgc:91944 (Danio rerio)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSDARG00000035887 T208591_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmbox1
M00419_2.00 		Mus musculus
NNNGWNNN
NNNWCNNN		 PBM
Berger et al.(2008)
Hmbox1_2674 		0.783 0.877
HMBOX1
M03167_2.00 		Homo sapiens
BKTAACTARB
VYTAGTTAMV		 SELEX
Jolma et al.(2013)
HMBOX1_1 		0.783 0.877
HMBOX1
M05180_2.00 		Homo sapiens
BTAACYAGB
VCTRGTTAV		 SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX 		0.783 0.877
HMBOX1
M05181_2.00 		Homo sapiens
NTAACTAGB
VCTAGTTAN		 SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX 		0.783 0.877
Hnf1b
M00408_2.00 		Mus musculus
NNHWCNNN
NNNGWDNN		 PBM
Berger et al.(2008)
Tcf2_0913 		0.683 0.404
Hnf1a
M00171_2.00 		Mus musculus
HTAAYYNN
NNRRTTAD		 PBM
Badis et al.(2009)
Tcf1_2666 		0.683 0.404
Hnf1a
M00444_2.00 		Mus musculus
HTAAYYNNN
NNNRRTTAD		 PBM
Berger et al.(2008)
Tcf1_2666 		0.683 0.404
HNF1A
M03150_2.00 		Homo sapiens
NGTTAATNATTAAYN
NRTTAATNATTAACN		 SELEX
Jolma et al.(2013)
HNF1A_1 		0.683 0.404
HNF1B
M03245_2.00 		Homo sapiens
GTTAATNATTAAY
RTTAATNATTAAC		 SELEX
Jolma et al.(2013)
HNF1B_1 		0.683 0.404
HNF1B
M03246_2.00 		Homo sapiens
NGTTAATNATTAAYN
NRTTAATNATTAACN		 SELEX
Jolma et al.(2013)
HNF1B_2 		0.683 0.404
HNF1A
M09144_2.00 		Homo sapiens
DGTTAATKATTAACH
DGTTAATMATTAACH		 Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C 		0.683 0.404
HNF1B
M09168_2.00 		Homo sapiens
DGTTAATRATTAACH
DGTTAATYATTAACH		 Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A 		0.683 0.404
Hnf1a
M09191_2.00 		Mus musculus
RGTTAATNWTTDMHN
NDKHAAWNATTAACY		 Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A 		0.683 0.404
Hnf1b
M09179_2.00 		Mus musculus
DGTTAATRATTAACH
DGTTAATYATTAACH		 Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A 		0.683 0.404
HNF1A
M10690_2.00 		Homo sapiens
RGTTAATDWTTRMHV
BDKYAAWHATTAACY		 Transfac
Matys et al.(2006)
V$HNF1_01 		0.683 0.404
HNF1A
M10691_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1A_Q4 		0.683 0.404
HNF1A
M10692_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1A_Q5 		0.683 0.404
HNF1B
M10758_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1B_Q6_01 		0.683 0.404
HNF1B
M10759_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1B_Q6 		0.683 0.404
HNF1A
M10693_2.00 		Homo sapiens
DGBTAATBAWTHAMYWM
KWRKTDAWTVATTAVCH		 Transfac
Matys et al.(2006)
V$HNF1_C 		0.683 0.404
HNF1B
M10760_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LFA1_Q6 		0.683 0.404
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000052100 Homeodomain 306 377
ENSDARP00000122517 Homeodomain 302 373

Links

Other Homeodomain family TFs
Other Danio rerio TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000011241 Astyanax mexicanus ENSAMXG00000011241 I 0.867
zgc:91944 Takifugu rubripes ENSTRUG00000012550 I 0.866
zgc:91944 Oryzias latipes ENSORLG00000020883 I 0.866
ENSONIG00000007704 Oreochromis niloticus ENSONIG00000007704 I 0.866
ENSXMAG00000005730 Xiphophorus maculatus ENSXMAG00000005730 I 0.866
ENSGMOG00000004622 Gadus morhua ENSGMOG00000004622 I 0.866
ENSPFOG00000012263 Poecilia formosa ENSPFOG00000012263 I 0.866
zgc:91944 Tetraodon nigroviridis ENSTNIG00000014025 I 0.866
zgc:91944 Gasterosteus aculeatus ENSGACG00000009223 I 0.866
ENSLOCG00000001916 Lepisosteus oculatus ENSLOCG00000001916 I 0.822
ENSLACG00000011304 Latimeria chalumnae ENSLACG00000011304 I 0.805
ENSGMOG00000002742 Gadus morhua ENSGMOG00000002742 I 0.796
HMBOX1 Gorilla gorilla ENSGGOG00000000860 I 0.783
HMBOX1 Equus caballus ENSECAG00000008240 I 0.783
Hmbox1 Rattus norvegicus ENSRNOG00000013326 I 0.783
ENSP00000401769-D1 Bos grunniens ENSP00000401769-D1 I 0.783
HMBOX1 Tursiops truncatus ENSTTRG00000015467 I 0.783
ENSNLEG00000016701 Nomascus leucogenys ENSNLEG00000016701 I 0.783
HMBOX1 Dasypus novemcinctus ENSDNOG00000031840 I 0.783
ENSP00000401769 Macaca fascicularis ENSP00000401769 I 0.783
Hmbox1 Mus musculus ENSMUSG00000021972 D 0.783
HMBOX1 Otolemur garnettii ENSOGAG00000001381 I 0.783
HMBOX1 Homo sapiens ENSG00000147421 D 0.783
ENSLOCG00000015994 Lepisosteus oculatus ENSLOCG00000015994 I 0.783
HMBOX1 Sus scrofa ENSSSCG00000009682 I 0.783
Afo_R011837 Aptenodytes forsteri Afo_R011837 I 0.783
ENSSHAG00000016211 Sarcophilus harrisii ENSSHAG00000016211 I 0.783
HMBOX1 Felis catus ENSFCAG00000022672 I 0.783
Gfo_R008926 Geospiza fortis Gfo_R008926 I 0.783
Cmyd_10005786 Chelonia mydas Cmyd_10005786 I 0.783
ENSFALG00000010859 Ficedula albicollis ENSFALG00000010859 I 0.783
Brh_R012838 Buceros rhinoceros Brh_R012838 I 0.783
HMBOX1 Gallus gallus ENSGALG00000016633 I 0.783
ENSMEUG00000015023 Macropus eugenii ENSMEUG00000015023 I 0.783
ENSCSAG00000015894 Chlorocebus sabaeus ENSCSAG00000015894 I 0.783
ENSAPLG00000006003 Anas platyrhynchos ENSAPLG00000006003 I 0.783
HMBOX1 Taeniopygia guttata ENSTGUG00000013324 I 0.783
ENSMPUG00000001070 Mustela putorius furo ENSMPUG00000001070 I 0.783
HMBOX1 Bos taurus ENSBTAG00000010819 I 0.783
HMBOX1 Canis familiaris ENSCAFG00000008237 I 0.783
ENSPSIG00000016826 Pelodiscus sinensis ENSPSIG00000016826 I 0.783
ENSAMEG00000016028 Ailuropoda melanoleuca ENSAMEG00000016028 I 0.783
ENSPPYG00000018480 Pongo abelii ENSPPYG00000018480 I 0.783
HMBOX1 Anolis carolinensis ENSACAG00000010160 I 0.783
HMBOX1 Loxodonta africana ENSLAFG00000032318 I 0.783
hmbox1.S Xenopus laevis XB-GENE-6078482 I 0.783
HMBOX1 Monodelphis domestica ENSMODG00000008788 I 0.783
HMBOX1 Procavia capensis ENSPCAG00000012005 I 0.783
ENSTSYG00000001109 Tarsius syrichta ENSTSYG00000001109 I 0.783
Myotis_brandtii_HMBOX1_10012332 Myotis brandtii Myotis_brandtii_HMBOX1_10012332 I 0.783
ENSOARG00000015036 Ovis aries ENSOARG00000015036 I 0.783
HMBOX1 Myotis lucifugus ENSMLUG00000007478 I 0.783
HMBOX1 Oryctolagus cuniculus ENSOCUG00000017211 I 0.783
HMBOX1 Callithrix jacchus ENSCJAG00000015654 I 0.783
HMBOX1 Macaca mulatta ENSMMUG00000014981 I 0.783
HMBOX1 Choloepus hoffmanni ENSCHOG00000005538 I 0.783
HMBOX1 Pan troglodytes ENSPTRG00000020127 I 0.783
ENSPANG00000014537 Papio anubis ENSPANG00000014537 I 0.783
Aan_R010756 Calypte anna Aan_R010756 I 0.783
ENSXMAG00000001795 Xiphophorus maculatus ENSXMAG00000001795 I 0.778
hmbox1a Danio rerio ENSDARG00000027082 I 0.778
hmbox1b Takifugu rubripes ENSTRUG00000004378 I 0.778
ENSPFOG00000000843 Poecilia formosa ENSPFOG00000000843 I 0.778
ENSAMXG00000018539 Astyanax mexicanus ENSAMXG00000018539 I 0.778
HMBOX1 Cavia porcellus ENSCPOG00000011124 I 0.778
hmbox1b Oryzias latipes ENSORLG00000016242 I 0.778
hmbox1b Danio rerio ENSDARG00000018913 I 0.778
hmbox1b Gasterosteus aculeatus ENSGACG00000004391 I 0.778
ENSONIG00000001328 Oreochromis niloticus ENSONIG00000001328 I 0.778
ENSGMOG00000006872 Gadus morhua ENSGMOG00000006872 I 0.774
hmbox1a Oryzias latipes ENSORLG00000014467 I 0.726
hmbox1a Gasterosteus aculeatus ENSGACG00000014814 I 0.723
hmbox1a Tetraodon nigroviridis ENSTNIG00000011904 I 0.722
hmbox1a Takifugu rubripes ENSTRUG00000006366 I 0.722
ENSXMAG00000011675 Xiphophorus maculatus ENSXMAG00000011675 I 0.722
ENSONIG00000003040 Oreochromis niloticus ENSONIG00000003040 I 0.722
ENSPFOG00000017886 Poecilia formosa ENSPFOG00000017886 I 0.722
Q4S8E1_TETNG Tetraodon nigroviridis Q4S8E1_TETNG I 0.722
ENSCSAVG00000002486 Ciona savignyi ENSCSAVG00000002486 I 0.700
SPU_022737 Strongylocentrotus purpuratus SPU_022737 I 0.700
ENSCING00000003920 Ciona intestinalis ENSCING00000003920 I 0.700
SPU_002791 Strongylocentrotus purpuratus SPU_002791 I 0.700
fgenesh2_pg.scaffold_505000025 Branchiostoma floridae fgenesh2_pg.scaffold_505000025 I 0.698
SNAPOd2T00002150001 Oikopleura dioica SNAPOd2T00002150001 I 0.691
HNF1B Pan troglodytes ENSPTRG00000009059 I 0.683
HNF1A Pan troglodytes ENSPTRG00000005551 I 0.683
ENSPSIG00000013055 Pelodiscus sinensis ENSPSIG00000013055 I 0.683
HNF1A Pteropus vampyrus ENSPVAG00000008044 I 0.683
HNF1A Taeniopygia guttata ENSTGUG00000009673 I 0.683
Hnf1a Rattus norvegicus ENSRNOG00000001183 I 0.683
ENSSTOG00000012440 Ictidomys tridecemlineatus ENSSTOG00000012440 I 0.683
HNF1A Sus scrofa ENSSSCG00000009919 I 0.683
HNF1B Sus scrofa ENSSSCG00000022417 I 0.683
ENSSHAG00000005052 Sarcophilus harrisii ENSSHAG00000005052 I 0.683
HNF1B Sorex araneus ENSSARG00000007152 I 0.683
ENSSTOG00000004719 Ictidomys tridecemlineatus ENSSTOG00000004719 I 0.683
Hnf1b Rattus norvegicus ENSRNOG00000002598 I 0.683
HNF1B Pteropus vampyrus ENSPVAG00000010466 I 0.683
Aan_R008292 Calypte anna Aan_R008292 I 0.683
Pvit_03697 Pogona vitticeps Pvit_03697 I 0.683
Pvit_13545 Pogona vitticeps Pvit_13545 I 0.683
Tal_R010417 Tyto alba Tal_R010417 I 0.683
Ogr03456 Ophisaurus gracilis Ogr03456 I 0.683
Myotis_brandtii_HNF1B_10031016 Myotis brandtii Myotis_brandtii_HNF1B_10031016 I 0.683
Gfo_R010877 Geospiza fortis Gfo_R010877 I 0.683
Gfo_R012758 Geospiza fortis Gfo_R012758 I 0.683
Myotis_brandtii_HNF1A_10028127 Myotis brandtii Myotis_brandtii_HNF1A_10028127 I 0.683
fgenesh2_kg.scaffold_157000001 Branchiostoma floridae fgenesh2_kg.scaffold_157000001 I 0.683
fgenesh2_kg.scaffold_214000001 Branchiostoma floridae fgenesh2_kg.scaffold_214000001 I 0.683
hnf1b.L Xenopus laevis XB-GENE-485656 I 0.683
hnf1a.S Xenopus laevis XB-GENE-865049 I 0.683
XP_002939680 Xenopus tropicalis XP_002939680 I 0.683
hnf1b Xenopus tropicalis XB-GENE-485652 I 0.683
hnf1a Xenopus tropicalis XB-GENE-484117 I 0.683
Sakowv30011728m.g Saccoglossus kowalevskii Sakowv30011728m.g I 0.683
hnf1b.S Xenopus laevis XB-GENE-17330995 I 0.683
ENSP00000257555 Macaca fascicularis ENSP00000257555 I 0.683
ENSP00000225893 Macaca fascicularis ENSP00000225893 I 0.683
SPU_010305 Strongylocentrotus purpuratus SPU_010305 I 0.683
ENSPSIG00000009511 Pelodiscus sinensis ENSPSIG00000009511 I 0.683
Aan_R014136 Calypte anna Aan_R014136 I 0.683
ENSXMAG00000011775 Xiphophorus maculatus ENSXMAG00000011775 I 0.683
HNF1B Tursiops truncatus ENSTTRG00000015910 I 0.683
hnf1ba Takifugu rubripes ENSTRUG00000003809 I 0.683
ENSTSYG00000010701 Tarsius syrichta ENSTSYG00000010701 I 0.683
Afo_R009049 Aptenodytes forsteri Afo_R009049 I 0.683
Afo_R013605 Aptenodytes forsteri Afo_R013605 I 0.683
Cmyd_10016186 Chelonia mydas Cmyd_10016186 I 0.683
ENSBTAP00000006184-D1 Bos grunniens ENSBTAP00000006184-D1 I 0.683
ENSBTAP00000029049-D1 Bos grunniens ENSBTAP00000029049-D1 I 0.683
Cmyd_10005161 Chelonia mydas Cmyd_10005161 I 0.683
Brh_R011090 Buceros rhinoceros Brh_R011090 I 0.683
Alligator_sinensis_CCG002074.1 Alligator sinensis Alligator_sinensis_CCG002074.1 I 0.683
Alligator_sinensis_CCG014136.1 Alligator sinensis Alligator_sinensis_CCG014136.1 I 0.683
hnf1ba Tetraodon nigroviridis ENSTNIG00000016225 I 0.683
HNF1A Otolemur garnettii ENSOGAG00000009071 I 0.683
HNF1A Equus caballus ENSECAG00000019954 I 0.683
HNF1B Erinaceus europaeus ENSEEUG00000004998 I 0.683
ENSFALG00000005101 Ficedula albicollis ENSFALG00000005101 I 0.683
ENSFALG00000007499 Ficedula albicollis ENSFALG00000007499 I 0.683
HNF1B Equus caballus ENSECAG00000015854 I 0.683
Hnf1b Dipodomys ordii ENSDORG00000009669 I 0.683
HNF1A Dasypus novemcinctus ENSDNOG00000000374 I 0.683
HNF1B Dasypus novemcinctus ENSDNOG00000001586 I 0.683
Hnf1a Dipodomys ordii ENSDORG00000007676 I 0.683
HNF1B Felis catus ENSFCAG00000000241 I 0.683
HNF1A Felis catus ENSFCAG00000009638 I 0.683
HNF1A Gorilla gorilla ENSGGOG00000004329 I 0.683
HNF1B Gorilla gorilla ENSGGOG00000006322 I 0.683
ENSGMOG00000001038 Gadus morhua ENSGMOG00000001038 I 0.683
HNF1A Gallus gallus ENSGALG00000006968 I 0.683
HNF1B Gallus gallus ENSGALG00000005504 I 0.683
HNF1A Homo sapiens ENSG00000135100 D 0.683
HNF1B Homo sapiens ENSG00000275410 D 0.683
hnf1ba Gasterosteus aculeatus ENSGACG00000011101 I 0.683
hnf1bb Danio rerio ENSDARG00000022295 I 0.683
hnf1ba Danio rerio ENSDARG00000006615 I 0.683
ENSAMXG00000024376 Astyanax mexicanus ENSAMXG00000024376 I 0.683
ENSAPLG00000002580 Anas platyrhynchos ENSAPLG00000002580 I 0.683
HNF1B Bos taurus ENSBTAG00000004710 I 0.683
HNF1A Bos taurus ENSBTAG00000021795 I 0.683
ENSAMXG00000005661 Astyanax mexicanus ENSAMXG00000005661 I 0.683
ENSAMXG00000004039 Astyanax mexicanus ENSAMXG00000004039 I 0.683
HNF1B Anolis carolinensis ENSACAG00000006458 I 0.683
ENSAMEG00000008387 Ailuropoda melanoleuca ENSAMEG00000008387 I 0.683
ENSAMEG00000013125 Ailuropoda melanoleuca ENSAMEG00000013125 I 0.683
HNF1A Canis familiaris ENSCAFG00000010502 I 0.683
HNF1B Canis familiaris ENSCAFG00000018150 I 0.683
ENSCSAG00000002227 Chlorocebus sabaeus ENSCSAG00000002227 I 0.683
ENSCSAG00000006125 Chlorocebus sabaeus ENSCSAG00000006125 I 0.683
ENSCSAVG00000009827 Ciona savignyi ENSCSAVG00000009827 I 0.683
HNF1A Cavia porcellus ENSCPOG00000007242 I 0.683
HNF1B Cavia porcellus ENSCPOG00000001234 I 0.683
HNF1B Choloepus hoffmanni ENSCHOG00000006010 I 0.683
ENSCING00000007645 Ciona intestinalis ENSCING00000007645 I 0.683
HNF1B Callithrix jacchus ENSCJAG00000015174 I 0.683
ENSPPYG00000008222 Pongo abelii ENSPPYG00000008222 I 0.683
ENSGMOG00000016065 Gadus morhua ENSGMOG00000016065 I 0.683
ENSOARG00000003338 Ovis aries ENSOARG00000003338 I 0.683
ENSOARG00000013764 Ovis aries ENSOARG00000013764 I 0.683
HNF1B Oryctolagus cuniculus ENSOCUG00000003682 I 0.683
HNF1A Ornithorhynchus anatinus ENSOANG00000014646 I 0.683
ENSNLEG00000002919 Nomascus leucogenys ENSNLEG00000002919 I 0.683
ENSMPUG00000015004 Mustela putorius furo ENSMPUG00000015004 I 0.683
ENSLACG00000012983 Latimeria chalumnae ENSLACG00000012983 I 0.683
Hnf1a Mus musculus ENSMUSG00000029556 D 0.683
HNF1B Otolemur garnettii ENSOGAG00000000869 I 0.683
ENSONIG00000013161 Oreochromis niloticus ENSONIG00000013161 I 0.683
ENSPANG00000022102 Papio anubis ENSPANG00000022102 I 0.683
HNF1B Procavia capensis ENSPCAG00000008147 I 0.683
ENSPFOG00000009496 Poecilia formosa ENSPFOG00000009496 I 0.683
ENSPANG00000008728 Papio anubis ENSPANG00000008728 I 0.683
hnf1ba Oryzias latipes ENSORLG00000004564 I 0.683
HNF1A Ochotona princeps ENSOPRG00000001671 I 0.683
HNF1B Ochotona princeps ENSOPRG00000003933 I 0.683
ENSMPUG00000003290 Mustela putorius furo ENSMPUG00000003290 I 0.683
Hnf1b Mus musculus ENSMUSG00000020679 D 0.683
HNF1B Monodelphis domestica ENSMODG00000019108 I 0.683
ENSMEUG00000004163 Macropus eugenii ENSMEUG00000004163 I 0.683
HNF1B Meleagris gallopavo ENSMGAG00000008126 I 0.683
ENSLOCG00000002874 Lepisosteus oculatus ENSLOCG00000002874 I 0.683
HNF1A Loxodonta africana ENSLAFG00000017872 I 0.683
ENSLACG00000017915 Latimeria chalumnae ENSLACG00000017915 I 0.683
HNF1B Loxodonta africana ENSLAFG00000002573 I 0.683
HNF1A Meleagris gallopavo ENSMGAG00000008538 I 0.683
ENSLOCG00000005942 Lepisosteus oculatus ENSLOCG00000005942 I 0.683
HNF1A Myotis lucifugus ENSMLUG00000009109 I 0.683
HNF1B Myotis lucifugus ENSMLUG00000012260 I 0.683
HNF1A Monodelphis domestica ENSMODG00000002966 I 0.683
HNF1B Macaca mulatta ENSMMUG00000003431 I 0.683
TriadG28952 Trichoplax adhaerens TriadG28952 I 0.658
HelroG166133 Helobdella robusta HelroG166133 I 0.652
CapteG124171 Capitella teleta CapteG124171 I 0.652
ENSPFOG00000013053 Poecilia formosa ENSPFOG00000013053 I 0.638
ENSORLG00000018971 Oryzias latipes ENSORLG00000018971 I 0.638
hnf1a Gasterosteus aculeatus ENSGACG00000012691 I 0.638
hnf1a Takifugu rubripes ENSTRUG00000016222 I 0.638
ENSONIG00000011178 Oreochromis niloticus ENSONIG00000011178 I 0.638
ENSXMAG00000003472 Xiphophorus maculatus ENSXMAG00000003472 I 0.638
hnf1a Tetraodon nigroviridis ENSTNIG00000011468 I 0.638
hnf1a Danio rerio ENSDARG00000009470 I 0.638
HMBOX1 Tupaia belangeri ENSTBEG00000016300 I 0.620