pax10 (Danio rerio)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSDARG00000053364 T208626_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Is expressed in brain; eye; head; retina; and testis. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NEMVEDRAFT_v1g136480
M02147_2.00 		Nematostella vectensis
NNNNNNNNNN
NNNNNNNNNN		 PBM
Weirauch et al.(2014)
pTH6103 		0.622 0.526
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000126153 Homeodomain 75 131
ENSDARP00000126201 Homeodomain 75 131
ENSDARP00000140457 Homeodomain 75 131

Links

Other Homeodomain family TFs
Other Danio rerio TFs

Invalid Input OrderBy

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action