|
HOXA7
(Homo sapiens)
Homeodomain
|
TF Information |
Pfam ID |
Interpro ID |
Gene ID |
CIS-BP ID |
Sequence source |
Animal TF db |
PF00046 (Homeobox) |
IPR001356 |
ENSG00000122592 |
T209822_2.00 |
Ensembl (2018-Dec-8) |
Link out |
NCBI Gene Info:In vertebrates, the genes encoding the class of transcription factors called homeobox genes are found in clusters named A, B, C, and D on four separate chromosomes. Expression of these proteins is spatially and temporally regulated during embryonic development. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulate gene expression, morphogenesis, and differentiation. For example, the encoded protein represses the transcription of differentiation-specific genes during keratinocyte proliferation, but this repression is then overcome by differentiation signals. This gene is highly similar to the antennapedia (Antp) gene of Drosophila. [provided by RefSeq, Jul 2008] |
Directly determined binding motifs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
HOXA7 M05069_2.00 |
Homo sapiens |
NTAATKRV |
BYMATTAN |
SELEX
Yin et al.(2017)
HOXA7_eDBD_HT-SELEX |
(Direct) |
(Direct) |
HOXA7 M05070_2.00 |
Homo sapiens |
NTAATKRN |
NYMATTAN |
SELEX
Yin et al.(2017)
HOXA7_eDBD_Methyl-HT-SELEX_1 |
(Direct) |
(Direct) |
HOXA7 M05071_2.00 |
Homo sapiens |
NTAAYGAY |
RTCRTTAN |
SELEX
Yin et al.(2017)
HOXA7_eDBD_Methyl-HT-SELEX_2 |
(Direct) |
(Direct) |
HOXA7 M10679_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXA7_01 |
(Direct) |
(Direct) |
Motifs from related TFs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
Hoxa7
M00476_2.00 |
Mus musculus |
NNWAYNDNN |
NNHNRTWNN |
PBM
Berger et al.(2008)
Hoxa7_2668
|
0.867
|
1.000
|
Hoxa7
M00477_2.00 |
Mus musculus |
NYHHYNNNN |
NNNNRDDRN |
PBM
Berger et al.(2008)
Hoxa7_3750
|
0.867
|
1.000
|
Antp
M06549_2.00 |
Drosophila melanogaster |
TTAATKA |
TMATTAA |
B1H
Mathelier et al.(2014)
MA0166.1
|
0.867
|
1.000
|
Antp
M06374_2.00 |
Drosophila melanogaster |
YTTAATKA |
TMATTAAR |
B1H
Zhu et al.(2011)
Antp_Cell_FBgn0000095
|
0.867
|
1.000
|
Antp
M06375_2.00 |
Drosophila melanogaster |
WTAATW |
AATTAW |
B1H
Zhu et al.(2011)
Antp_FlyReg_FBgn0000095
|
0.867
|
1.000
|
Antp
M06376_2.00 |
Drosophila melanogaster |
NHTAATKR |
YMATTADN |
B1H
Zhu et al.(2011)
Antp_SOLEXA_FBgn0000095
|
0.867
|
1.000
|
Antp
M09682_2.00 |
Drosophila melanogaster |
TYTTWATKA |
TMATWAARA |
Misc
Kulakovskiy et al.(2009)
Antp
|
0.867
|
1.000
|
Antp
M10789_2.00 |
Drosophila melanogaster |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
I$ANTP_Q6_01
|
0.867
|
1.000
|
HOXB7
M00334_2.00 |
Homo sapiens |
NBRDNNN |
NNNHYVN |
PBM
Barrera et al.(2016)
HOXB7_REF
|
0.850
|
0.965
|
Hoxb7
M00481_2.00 |
Mus musculus |
NNWAYNDN |
NHNRTWNN |
PBM
Berger et al.(2008)
Hoxb7_3953
|
0.850
|
0.965
|
HOXB7
M05404_2.00 |
Homo sapiens |
BTAATKRV |
BYMATTAV |
SELEX
Yin et al.(2017)
HOXB7_eDBD_HT-SELEX
|
0.850
|
0.965
|
HOXB7
M05407_2.00 |
Homo sapiens |
BBTAATTRCN |
NGYAATTAVV |
SELEX
Yin et al.(2017)
HOXB7_FL_HT-SELEX
|
0.850
|
0.965
|
HOXB7
M09166_2.00 |
Homo sapiens |
MATHAATCAW |
WTGATTDATK |
Misc
Kulakovskiy et al.(2013)
HXB7_HUMAN.H11MO.0.C
|
0.850
|
0.965
|
Hoxb7
M09206_2.00 |
Mus musculus |
MATHAATCAW |
WTGATTDATK |
Misc
Kulakovskiy et al.(2013)
HXB7_MOUSE.H11MO.0.C
|
0.850
|
0.965
|
HOXB7
M05405_2.00 |
Homo sapiens |
BTAATKRV |
BYMATTAV |
SELEX
Yin et al.(2017)
HOXB7_eDBD_Methyl-HT-SELEX_1
|
0.850
|
0.965
|
HOXB7
M05406_2.00 |
Homo sapiens |
NTAAYGAY |
RTCRTTAN |
SELEX
Yin et al.(2017)
HOXB7_eDBD_Methyl-HT-SELEX_2
|
0.850
|
0.965
|
HOXB7
M05408_2.00 |
Homo sapiens |
NNTAATKRCN |
NGYMATTANN |
SELEX
Yin et al.(2017)
HOXB7_FL_Methyl-HT-SELEX_1
|
0.850
|
0.965
|
HOXB7
M05409_2.00 |
Homo sapiens |
NTAAYGAY |
RTCRTTAN |
SELEX
Yin et al.(2017)
HOXB7_FL_Methyl-HT-SELEX_2
|
0.850
|
0.965
|
HOXB7
M00333_2.00 |
Homo sapiens |
NHATWTATTN |
NAATAWATDN |
PBM
Barrera et al.(2016)
HOXB7_R189C
|
0.850
|
0.947
|
ftz
M03795_2.00 |
Drosophila melanogaster |
WTAATTRC |
GYAATTAW |
SELEX
Nitta et al.(2015)
ftz_1
|
0.840
|
0.877
|
ftz
M06488_2.00 |
Drosophila melanogaster |
TTAATKA |
TMATTAA |
B1H
Mathelier et al.(2014)
MA0225.1
|
0.840
|
0.877
|
ftz
M06247_2.00 |
Drosophila melanogaster |
VTTAATKA |
TMATTAAB |
B1H
Zhu et al.(2011)
Ftz_Cell_FBgn0001077
|
0.840
|
0.877
|
ftz
M06248_2.00 |
Drosophila melanogaster |
TAATKRNH |
DNYMATTA |
B1H
Zhu et al.(2011)
ftz_FlyReg_FBgn0001077
|
0.840
|
0.877
|
ftz
M06249_2.00 |
Drosophila melanogaster |
BTAATKA |
TMATTAV |
B1H
Zhu et al.(2011)
Ftz_SOLEXA_FBgn0001077
|
0.840
|
0.877
|
ftz
M09679_2.00 |
Drosophila melanogaster |
YTAATKRNN |
NNYMATTAR |
Misc
Kulakovskiy et al.(2009)
ftz
|
0.840
|
0.877
|
ftz
M10787_2.00 |
Drosophila melanogaster |
CTTAATTRBHBB |
VVDVYAATTAAG |
Transfac
Matys et al.(2006)
I$FTZ_01
|
0.840
|
0.877
|
Hoxa6
M00494_2.00 |
Mus musculus |
NWWATKRNN |
NNYMATWWN |
PBM
Berger et al.(2008)
Hoxa6_1040
|
0.835
|
0.965
|
HOXA6
M04974_2.00 |
Homo sapiens |
NNTAATKRVN |
NBYMATTANN |
SELEX
Yin et al.(2017)
HOXA6_eDBD_HT-SELEX
|
0.835
|
0.965
|
HOXA6
M04975_2.00 |
Homo sapiens |
NNTAATKRBN |
NVYMATTANN |
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_1
|
0.835
|
0.965
|
HOXA6
M04976_2.00 |
Homo sapiens |
NTAAYGRY |
RYCRTTAN |
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_2
|
0.835
|
0.965
|
Hoxb6
M00381_2.00 |
Mus musculus |
NNDHNNN |
NNNDHNN |
PBM
Berger et al.(2008)
Hoxb6_3428
|
0.831
|
0.965
|
HOXB6
M04999_2.00 |
Homo sapiens |
NTAATKRY |
RYMATTAN |
SELEX
Yin et al.(2017)
HOXB6_eDBD_HT-SELEX
|
0.831
|
0.965
|
HOXB6
M05000_2.00 |
Homo sapiens |
HTAAYGAY |
RTCRTTAD |
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_1
|
0.831
|
0.965
|
HOXB6
M05001_2.00 |
Homo sapiens |
NTWATKRB |
VYMATWAN |
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_2
|
0.831
|
0.965
|
Hoxc6
M00392_2.00 |
Mus musculus |
TTAATTAB |
VTAATTAA |
PBM
Berger et al.(2008)
Hoxc6_3954
|
0.822
|
0.930
|
Hoxb8
M00517_2.00 |
Mus musculus |
NWWAYNDNN |
NNHNRTWWN |
PBM
Berger et al.(2008)
Hoxb8_3780
|
0.821
|
0.842
|
HOXB8
M05048_2.00 |
Homo sapiens |
NTAATKRM |
KYMATTAN |
SELEX
Yin et al.(2017)
HOXB8_eDBD_HT-SELEX
|
0.821
|
0.842
|
HOXB8
M09141_2.00 |
Homo sapiens |
BMATHAATCAA |
TTGATTDATKV |
Misc
Kulakovskiy et al.(2013)
HXB8_HUMAN.H11MO.0.C
|
0.821
|
0.842
|
Hoxb8
M09214_2.00 |
Mus musculus |
BMATHAATCAA |
TTGATTDATKV |
Misc
Kulakovskiy et al.(2013)
HXB8_MOUSE.H11MO.0.C
|
0.821
|
0.842
|
HOXB8
M05049_2.00 |
Homo sapiens |
NTAATKRN |
NYMATTAN |
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_1
|
0.821
|
0.842
|
HOXB8
M05050_2.00 |
Homo sapiens |
NTAAYGAY |
RTCRTTAN |
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_2
|
0.821
|
0.842
|
HOXD8
M03221_2.00 |
Homo sapiens |
VHWAATKWDN |
NHWMATTWDB |
SELEX
Jolma et al.(2013)
HOXD8_1
|
0.821
|
0.825
|
HOXD8
M05310_2.00 |
Homo sapiens |
BTAATKRY |
RYMATTAV |
SELEX
Yin et al.(2017)
HOXD8_eDBD_HT-SELEX
|
0.821
|
0.825
|
HOXD8
M05311_2.00 |
Homo sapiens |
NTAATKRN |
NYMATTAN |
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_1
|
0.821
|
0.825
|
HOXD8
M05312_2.00 |
Homo sapiens |
NTWAYGRY |
RYCRTWAN |
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_2
|
0.821
|
0.825
|
CBG00029
M01240_2.00 |
Caenorhabditis briggsae |
ATTAATTA |
TAATTAAT |
PBM
Lambert et al.(2019)
pTH11471
|
0.818
|
0.754
|
abd-A
M03770_2.00 |
Drosophila melanogaster |
NNTAATKRCN |
NGYMATTANN |
SELEX
Nitta et al.(2015)
abd-A_1
|
0.814
|
0.930
|
abd-A
M03771_2.00 |
Drosophila melanogaster |
NNTAATKRCN |
NGYMATTANN |
SELEX
Nitta et al.(2015)
abd-A_2
|
0.814
|
0.930
|
abd-A
M06475_2.00 |
Drosophila melanogaster |
TTAATKA |
TMATTAA |
B1H
Mathelier et al.(2014)
MA0206.1
|
0.814
|
0.930
|
abd-A
M06210_2.00 |
Drosophila melanogaster |
WTWATKDM |
KHMATWAW |
B1H
Zhu et al.(2011)
Abd-A_FlyReg_FBgn0000014
|
0.814
|
0.930
|
abd-A
M09671_2.00 |
Drosophila melanogaster |
HTAATKRH |
DYMATTAD |
Misc
Kulakovskiy et al.(2009)
abd-A
|
0.814
|
0.930
|
abd-A
M10778_2.00 |
Drosophila melanogaster |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
I$ABDA_Q6
|
0.814
|
0.930
|
Hoxd8
M00436_2.00 |
Mus musculus |
NNWWYNNN |
NNNRWWNN |
PBM
Berger et al.(2008)
Hoxd8_2644
|
0.809
|
0.807
|
Ubx
M00558_2.00 |
Drosophila melanogaster |
NWWAYDDNN |
NNHHRTWWN |
PBM
Busser et al.(2012a)
Ubx
|
0.805
|
0.912
|
Ubx
M03804_2.00 |
Drosophila melanogaster |
NTAATKRH |
DYMATTAN |
SELEX
Nitta et al.(2015)
Ubx_1
|
0.805
|
0.912
|
Ubx
M06499_2.00 |
Drosophila melanogaster |
NTTAATKR |
YMATTAAN |
B1H
Mathelier et al.(2014)
MA0094.2
|
0.805
|
0.912
|
Ubx
M06273_2.00 |
Drosophila melanogaster |
NTTAATKR |
YMATTAAN |
B1H
Zhu et al.(2011)
Ubx_Cell_FBgn0003944
|
0.805
|
0.912
|
Ubx
M06274_2.00 |
Drosophila melanogaster |
TAATKD |
HMATTA |
B1H
Zhu et al.(2011)
Ubx_FlyReg_FBgn0003944
|
0.805
|
0.912
|
Ubx
M06275_2.00 |
Drosophila melanogaster |
NTTWATKR |
YMATWAAN |
B1H
Zhu et al.(2011)
Ubx_SOLEXA_FBgn0003944
|
0.805
|
0.912
|
Ubx
M09680_2.00 |
Drosophila melanogaster |
TTAATKR |
YMATTAA |
Misc
Kulakovskiy et al.(2009)
Ubx
|
0.805
|
0.912
|
Ubx
M10788_2.00 |
Drosophila melanogaster |
NNVNNNNTAATKRNBHNND |
HNNDVNYMATTANNNNBNN |
Transfac
Matys et al.(2006)
I$UBX_01
|
0.805
|
0.912
|
HOXB7
M00331_2.00 |
Homo sapiens |
NNNNNNY |
RNNNNNN |
PBM
Barrera et al.(2016)
HOXB7_K191R
|
0.794
|
0.947
|
Hoxc8
M00391_2.00 |
Mus musculus |
NNDNYNNNN |
NNNNRNHNN |
PBM
Berger et al.(2008)
Hoxc8_3429
|
0.789
|
0.825
|
HOXC8
M04912_2.00 |
Homo sapiens |
NYAATTRN |
NYAATTRN |
SELEX
Yin et al.(2017)
HOXC8_FL_HT-SELEX
|
0.789
|
0.825
|
HOXC8
M10636_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXC8_Q3
|
0.789
|
0.825
|
HOXC8
M04913_2.00 |
Homo sapiens |
NYMATKRN |
NYMATKRN |
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_1
|
0.789
|
0.825
|
HOXC8
M04914_2.00 |
Homo sapiens |
NTWAYGRY |
RYCRTWAN |
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_2
|
0.789
|
0.825
|
HOXB7
M00332_2.00 |
Homo sapiens |
NDWATATAYN |
NRTATATWHN |
PBM
Barrera et al.(2016)
HOXB7_M190L
|
0.774
|
0.947
|
egl-5
M09581_2.00 |
Caenorhabditis elegans |
DWTTWATGGS |
SCCATWAAWH |
Misc
Heinz et al.(2010)
cElegans-L3-EGL5_modEncode
|
0.750
|
0.579
|
CBG00023
M02062_2.00 |
Caenorhabditis briggsae |
NWWATKDNNN |
NNNHMATWWN |
PBM
Weirauch et al.(2014)
pTH5778
|
0.750
|
0.561
|
Q8I9J5_9BILA
M02214_2.00 |
Spadella cephaloptera |
NVTAWTWABN |
NVTWAWTABN |
PBM
Weirauch et al.(2014)
pTH6164
|
0.726
|
0.684
|
Scr
M03799_2.00 |
Drosophila melanogaster |
BTAATKRB |
VYMATTAV |
SELEX
Nitta et al.(2015)
Scr_1
|
0.707
|
0.947
|
Scr
M06496_2.00 |
Drosophila melanogaster |
YTAATKA |
TMATTAR |
B1H
Mathelier et al.(2014)
MA0203.1
|
0.707
|
0.947
|
Scr
M06266_2.00 |
Drosophila melanogaster |
HVYTAATKA |
TMATTARBD |
B1H
Zhu et al.(2011)
Scr_Cell_FBgn0003339
|
0.707
|
0.947
|
Scr
M06267_2.00 |
Drosophila melanogaster |
YTAATKR |
YMATTAR |
B1H
Zhu et al.(2011)
Scr_SOLEXA_FBgn0003339
|
0.707
|
0.947
|
Hoxa5
M00478_2.00 |
Mus musculus |
NTAATNDNN |
NNHNATTAN |
PBM
Berger et al.(2008)
Hoxa5_3415
|
0.707
|
0.930
|
Hoxb5
M00480_2.00 |
Mus musculus |
NWDWTNNNN |
NNNNAWHWN |
PBM
Berger et al.(2008)
Hoxb5_3122
|
0.707
|
0.930
|
HOXB5
M03125_2.00 |
Homo sapiens |
NNKAATKRNN |
NNYMATTMNN |
SELEX
Jolma et al.(2013)
HOXB5_1
|
0.707
|
0.930
|
HOXA5
M04968_2.00 |
Homo sapiens |
STAATKRS |
SYMATTAS |
SELEX
Yin et al.(2017)
HOXA5_eDBD_HT-SELEX
|
0.707
|
0.930
|
HOXA5
M04971_2.00 |
Homo sapiens |
NTMATKRB |
VYMATKAN |
SELEX
Yin et al.(2017)
HOXA5_FL_HT-SELEX
|
0.707
|
0.930
|
HOXB5
M05051_2.00 |
Homo sapiens |
NTAATKRV |
BYMATTAN |
SELEX
Yin et al.(2017)
HOXB5_eDBD_HT-SELEX
|
0.707
|
0.930
|
HOXB5
M05054_2.00 |
Homo sapiens |
STMATKAB |
VTMATKAS |
SELEX
Yin et al.(2017)
HOXB5_FL_HT-SELEX
|
0.707
|
0.930
|
HOXA5
M10652_2.00 |
Homo sapiens |
NGRDBKBDHNBAVTAATKRRGRDVDDDGSR |
YSCHHHBHYCYYMATTABTVNDHVMVHYCN |
Transfac
Matys et al.(2006)
V$HOX13_01
|
0.707
|
0.930
|
HOXA5
M08457_2.00 |
Homo sapiens |
CDBWAATK |
MATTWVHG |
COMPILED
Mathelier et al.(2014)
MA0158.1
|
0.707
|
0.930
|
HOXA5
M04969_2.00 |
Homo sapiens |
BTAATKRV |
BYMATTAV |
SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_1
|
0.707
|
0.930
|
HOXA5
M04970_2.00 |
Homo sapiens |
NTAAYGAY |
RTCRTTAN |
SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_2
|
0.707
|
0.930
|
HOXA5
M04972_2.00 |
Homo sapiens |
NTMATKRN |
NYMATKAN |
SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_1
|
0.707
|
0.930
|
HOXA5
M04973_2.00 |
Homo sapiens |
NTAAYGAY |
RTCRTTAN |
SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_2
|
0.707
|
0.930
|
HOXB5
M05052_2.00 |
Homo sapiens |
NTMATKRN |
NYMATKAN |
SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_1
|
0.707
|
0.930
|
HOXB5
M05053_2.00 |
Homo sapiens |
NTAAYGAY |
RTCRTTAN |
SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_2
|
0.707
|
0.930
|
HOXB5
M05055_2.00 |
Homo sapiens |
NTMATKAB |
VTMATKAN |
SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_1
|
0.707
|
0.930
|
HOXB5
M05056_2.00 |
Homo sapiens |
HTAAYGAY |
RTCRTTAD |
SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_2
|
0.707
|
0.930
|
Hoxc5
M00422_2.00 |
Mus musculus |
NWRATND |
HNATYWN |
PBM
Berger et al.(2008)
Hoxc5_2630
|
0.695
|
0.895
|
CBG23031
M01245_2.00 |
Caenorhabditis briggsae |
NTTWATKRNN |
NNYMATWAAN |
PBM
Lambert et al.(2019)
pTH11458
|
0.681
|
0.526
|
Hoxb4
M00479_2.00 |
Mus musculus |
NTAATNDNN |
NNHNATTAN |
PBM
Berger et al.(2008)
Hoxb4_2627
|
0.658
|
0.860
|
HOXB4
M05343_2.00 |
Homo sapiens |
YTAATKAY |
RTMATTAR |
SELEX
Yin et al.(2017)
HOXB4_FL_HT-SELEX
|
0.658
|
0.860
|
HOXB4
M09162_2.00 |
Homo sapiens |
YTAATKRS |
SYMATTAR |
Misc
Kulakovskiy et al.(2013)
HXB4_HUMAN.H11MO.0.B
|
0.658
|
0.860
|
Hoxb4
M09204_2.00 |
Mus musculus |
YTAATKRS |
SYMATTAR |
Misc
Kulakovskiy et al.(2013)
HXB4_MOUSE.H11MO.0.A
|
0.658
|
0.860
|
Hoxb4
M09576_2.00 |
Mus musculus |
TGATDRATKRSN |
NSYMATYHATCA |
Misc
Heinz et al.(2010)
ES-Hoxb4_GSE34014
|
0.658
|
0.860
|
HOXB4
M05344_2.00 |
Homo sapiens |
HTAAYGAY |
RTCRTTAD |
SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_1
|
0.658
|
0.860
|
HOXB4
M05345_2.00 |
Homo sapiens |
HTAAYKAB |
VTMRTTAD |
SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_2
|
0.658
|
0.860
|
HOXD4
M05273_2.00 |
Homo sapiens |
NTMATKRV |
BYMATKAN |
SELEX
Yin et al.(2017)
HOXD4_eDBD_HT-SELEX
|
0.650
|
0.877
|
HOXD4
M05276_2.00 |
Homo sapiens |
NTAATKRB |
VYMATTAN |
SELEX
Yin et al.(2017)
HOXD4_FL_HT-SELEX
|
0.650
|
0.877
|
HOXD4
M05274_2.00 |
Homo sapiens |
NTMATKRN |
NYMATKAN |
SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_1
|
0.650
|
0.877
|
HOXD4
M05275_2.00 |
Homo sapiens |
NTAAYGAY |
RTCRTTAN |
SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_2
|
0.650
|
0.877
|
HOXD4
M05277_2.00 |
Homo sapiens |
NTAATKRN |
NYMATTAN |
SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_1
|
0.650
|
0.877
|
HOXD4
M05278_2.00 |
Homo sapiens |
NTAAYGAY |
RTCRTTAN |
SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_2
|
0.650
|
0.877
|
Hoxa4
M00383_2.00 |
Mus musculus |
NTAATBDNN |
NNHVATTAN |
PBM
Berger et al.(2008)
Hoxa4_3426
|
0.650
|
0.860
|
HOXA4
M05381_2.00 |
Homo sapiens |
NTAATKRY |
RYMATTAN |
SELEX
Yin et al.(2017)
HOXA4_eDBD_HT-SELEX
|
0.650
|
0.860
|
HOXA4
M10755_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXA4_Q2
|
0.650
|
0.860
|
HOXA4
M05382_2.00 |
Homo sapiens |
NTAAYGAY |
RTCRTTAN |
SELEX
Yin et al.(2017)
HOXA4_eDBD_Methyl-HT-SELEX
|
0.650
|
0.860
|
HOXC4
M00330_2.00 |
Homo sapiens |
YTAATTRB |
VYAATTAR |
PBM
Barrera et al.(2016)
HOXC4_REF
|
0.646
|
0.860
|
Hoxc4
M00530_2.00 |
Mus musculus |
NWAATNDNN |
NNHNATTWN |
PBM
Berger et al.(2008)
Hoxc4_3491
|
0.646
|
0.860
|
HOXC4
M05385_2.00 |
Homo sapiens |
NTAATKRN |
NYMATTAN |
SELEX
Yin et al.(2017)
HOXC4_FL_HT-SELEX
|
0.646
|
0.860
|
HOXC4
M05386_2.00 |
Homo sapiens |
NTAATKRN |
NYMATTAN |
SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_1
|
0.646
|
0.860
|
HOXC4
M05387_2.00 |
Homo sapiens |
NTAAYGAY |
RTCRTTAN |
SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_2
|
0.646
|
0.860
|
HOXC4
M00328_2.00 |
Homo sapiens |
YTAATTAB |
VTAATTAR |
PBM
Barrera et al.(2016)
HOXC4_N178S
|
0.646
|
0.842
|
Dfd
M03784_2.00 |
Drosophila melanogaster |
VNTAAYKRBN |
NVYMRTTANB |
SELEX
Nitta et al.(2015)
Dfd_1
|
0.644
|
0.842
|
Dfd
M03785_2.00 |
Drosophila melanogaster |
VYTAATKAYN |
NRTMATTARB |
SELEX
Nitta et al.(2015)
Dfd_2
|
0.644
|
0.842
|
Dfd
M06481_2.00 |
Drosophila melanogaster |
YTAATGA |
TCATTAR |
B1H
Mathelier et al.(2014)
MA0186.1
|
0.644
|
0.842
|
Dfd
M06226_2.00 |
Drosophila melanogaster |
VYTAATGA |
TCATTAAB |
B1H
Zhu et al.(2011)
Dfd_Cell_FBgn0000439
|
0.644
|
0.842
|
Dfd
M06227_2.00 |
Drosophila melanogaster |
TTAATKRY |
RYMATTAA |
B1H
Zhu et al.(2011)
Dfd_FlyReg_FBgn0000439
|
0.644
|
0.842
|
Dfd
M06228_2.00 |
Drosophila melanogaster |
NBTAATKR |
YMATTAVN |
B1H
Zhu et al.(2011)
Dfd_SOLEXA_FBgn0000439
|
0.644
|
0.842
|
Dfd
M09675_2.00 |
Drosophila melanogaster |
TTAATKRB |
VYMATTAA |
Misc
Kulakovskiy et al.(2009)
Dfd
|
0.644
|
0.842
|
Dfd
M10784_2.00 |
Drosophila melanogaster |
NNNNRKTAATNNNNNN |
NNNNNNATTAMYNNNN |
Transfac
Matys et al.(2006)
I$DFD_01
|
0.644
|
0.842
|
SPU_026099
M02175_2.00 |
Strongylocentrotus purpuratus |
KTAATTRB |
VYAATTAM |
PBM
Weirauch et al.(2014)
pTH6140
|
0.638
|
0.754
|
Pdx1
M00446_2.00 |
Mus musculus |
NWRAYNNN |
NNNRTYWN |
PBM
Berger et al.(2008)
Ipf1_3815
|
0.638
|
0.719
|
PDX1
M03155_2.00 |
Homo sapiens |
NTAATTRNNNYTAATTRN |
NYAATTARNNNYAATTAN |
SELEX
Jolma et al.(2013)
PDX1_1
|
0.638
|
0.719
|
PDX1
M03156_2.00 |
Homo sapiens |
BTAATKRN |
NYMATTAV |
SELEX
Jolma et al.(2013)
PDX1_2
|
0.638
|
0.719
|
PDX1
M05161_2.00 |
Homo sapiens |
YTAATKRB |
VYMATTAR |
SELEX
Yin et al.(2017)
PDX1_eDBD_HT-SELEX
|
0.638
|
0.719
|
PDX1
M09147_2.00 |
Homo sapiens |
TGATWGATK |
MATCWATCA |
Misc
Kulakovskiy et al.(2013)
PDX1_HUMAN.H11MO.0.A
|
0.638
|
0.719
|
Pdx1
M09192_2.00 |
Mus musculus |
VYTAATGRB |
VYCATTARB |
Misc
Kulakovskiy et al.(2013)
PDX1_MOUSE.H11MO.0.B
|
0.638
|
0.719
|
Pdx1
M09571_2.00 |
Mus musculus |
TGATTRATKR |
YMATYAATCA |
Misc
Heinz et al.(2010)
Islet-Pdx1_SRA008281
|
0.638
|
0.719
|
PDX1
M10699_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$IPF1_01
|
0.638
|
0.719
|
PDX1
M10700_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$IPF1_02
|
0.638
|
0.719
|
PDX1
M10701_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$IPF1_03
|
0.638
|
0.719
|
PDX1
M10702_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$IPF1_04
|
0.638
|
0.719
|
PDX1
M10703_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$IPF1_05
|
0.638
|
0.719
|
PDX1
M10704_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$IPF1_Q4_01
|
0.638
|
0.719
|
PDX1
M10705_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$IPF1_Q4
|
0.638
|
0.719
|
PDX1
M10706_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$IPF1_Q5_01
|
0.638
|
0.719
|
PDX1
M10707_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$IPF1_Q5
|
0.638
|
0.719
|
PDX1
M10708_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$IPF1_Q6
|
0.638
|
0.719
|
PDX1
M05162_2.00 |
Homo sapiens |
HTAAYGAB |
VTCRTTAD |
SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_1
|
0.638
|
0.719
|
PDX1
M05163_2.00 |
Homo sapiens |
YTAATKRB |
VYMATTAR |
SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_2
|
0.638
|
0.719
|
Q0N4M8_NEMVE
M02166_2.00 |
Nematostella vectensis |
HTAATKAC |
GTMATTAD |
PBM
Weirauch et al.(2014)
pTH6215
|
0.623
|
0.737
|
Hoxd3
M00531_2.00 |
Mus musculus |
NTAATNDN |
NHNATTAN |
PBM
Berger et al.(2008)
Hoxd3_1742
|
0.622
|
0.737
|
Hoxa3
M00172_2.00 |
Mus musculus |
NTAATKRNNN |
NNNYMATTAN |
PBM
Badis et al.(2009)
Hoxa3_2783
|
0.622
|
0.737
|
Hoxa3
M00532_2.00 |
Mus musculus |
NTAATKRNN |
NNYMATTAN |
PBM
Berger et al.(2008)
Hoxa3_2783
|
0.622
|
0.737
|
Hoxd3
M03287_2.00 |
Mus musculus |
NNTAATKRNN |
NNYMATTANN |
SELEX
Jolma et al.(2013)
Hoxd3_1
|
0.622
|
0.737
|
HOXD3
M05101_2.00 |
Homo sapiens |
CTAATTAS |
STAATTAG |
SELEX
Yin et al.(2017)
HOXD3_FL_HT-SELEX
|
0.622
|
0.737
|
HOXA3
M10651_2.00 |
Homo sapiens |
SVTWNDDKB |
VMHHNWABS |
Transfac
Matys et al.(2006)
V$HOXA3_01
|
0.622
|
0.737
|
HOXD3
M05102_2.00 |
Homo sapiens |
YTAAYGAY |
RTCRTTAR |
SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_1
|
0.622
|
0.737
|
HOXD3
M05103_2.00 |
Homo sapiens |
CTAATKAC |
GTMATTAG |
SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_2
|
0.622
|
0.737
|
Hoxb3
M00504_2.00 |
Mus musculus |
NTAATKRNN |
NNYMATTAN |
PBM
Berger et al.(2008)
Hoxb3_1720
|
0.622
|
0.719
|
HOXB3
M03126_2.00 |
Homo sapiens |
NBTAATKRNN |
NNYMATTAVN |
SELEX
Jolma et al.(2013)
HOXB3_1
|
0.622
|
0.719
|
lin-39
M08211_2.00 |
Caenorhabditis elegans |
GATTGATG |
CATCAATC |
ChIP-seq
Contrino et al.(2012)
Mw154
|
0.618
|
0.754
|
lin-39
M09582_2.00 |
Caenorhabditis elegans |
DTGATWRATK |
MATYWATCAH |
Misc
Heinz et al.(2010)
cElegans.L3-LIN39_modEncode
|
0.618
|
0.754
|
zen
M03805_2.00 |
Drosophila melanogaster |
BTAATKRB |
VYMATTAV |
SELEX
Nitta et al.(2015)
zen_1
|
0.617
|
0.649
|
zen
M06500_2.00 |
Drosophila melanogaster |
YTAATKA |
TMATTAR |
B1H
Mathelier et al.(2014)
MA0256.1
|
0.617
|
0.649
|
zen
M06276_2.00 |
Drosophila melanogaster |
NBYTAATKA |
TMATTARBN |
B1H
Zhu et al.(2011)
Zen_Cell_FBgn0004053
|
0.617
|
0.649
|
zen
M06277_2.00 |
Drosophila melanogaster |
AANWTWAWTG |
CAWTWAWNTT |
B1H
Zhu et al.(2011)
zen_FlyReg_FBgn0004053
|
0.617
|
0.649
|
zen
M06278_2.00 |
Drosophila melanogaster |
NYTAATKA |
TMATTARN |
B1H
Zhu et al.(2011)
Zen_SOLEXA_FBgn0004053
|
0.617
|
0.649
|
zen2
M02118_2.00 |
Drosophila melanogaster |
NNTAATKRNN |
NNYMATTANN |
PBM
Weirauch et al.(2014)
pTH5479
|
0.616
|
0.649
|
zen2
M03806_2.00 |
Drosophila melanogaster |
BTAATKAS |
STMATTAV |
SELEX
Nitta et al.(2015)
zen2_1
|
0.616
|
0.649
|
zen2
M03807_2.00 |
Drosophila melanogaster |
BTAATKWNNVRNNNNYBNNWMATTAV |
BTAATKWNNVRNNNNYBNNWMATTAV |
SELEX
Nitta et al.(2015)
zen2_2
|
0.616
|
0.649
|
zen2
M06501_2.00 |
Drosophila melanogaster |
BTAATKA |
TMATTAV |
B1H
Mathelier et al.(2014)
MA0257.1
|
0.616
|
0.649
|
zen2
M06279_2.00 |
Drosophila melanogaster |
HNBTAATKA |
TMATTAVND |
B1H
Zhu et al.(2011)
Zen2_Cell_FBgn0004054
|
0.616
|
0.649
|
zen2
M06280_2.00 |
Drosophila melanogaster |
NNNTAATKRN |
NYMATTANNN |
B1H
Zhu et al.(2011)
zen2_SOLEXA_2_FBgn0004054
|
0.616
|
0.649
|
zen2
M06281_2.00 |
Drosophila melanogaster |
YTAATKR |
YMATTAR |
B1H
Zhu et al.(2011)
Zen2_SOLEXA_FBgn0004054
|
0.616
|
0.649
|
HOXC4
M00329_2.00 |
Homo sapiens |
NTAATKRNN |
NNYMATTAN |
PBM
Barrera et al.(2016)
HOXC4_R158L
|
0.613
|
0.842
|
Q9GP48_9TURB
M02217_2.00 |
Discocelis tigrina |
DTAATTAB |
VTAATTAH |
PBM
Weirauch et al.(2014)
pTH6515
|
0.606
|
0.596
|
Q24780_9CNID
M02205_2.00 |
Eleutheria dichotoma |
NNYTAATTAMN |
NKTAATTARNN |
PBM
Weirauch et al.(2014)
pTH6308
|
0.601
|
0.614
|
Hoxc9
M00470_2.00 |
Mus musculus |
NGTAATWAAN |
NTTWATTACN |
PBM
Berger et al.(2008)
Hoxc9_2367
|
0.599
|
0.719
|
Hoxd9
M03282_2.00 |
Mus musculus |
TTTWATKKB |
VMMATWAAA |
SELEX
Jolma et al.(2013)
Hoxd9_1
|
0.599
|
0.719
|
Hoxd9
M03283_2.00 |
Mus musculus |
DWTTWATKRY |
RYMATWAAWH |
SELEX
Jolma et al.(2013)
Hoxd9_2
|
0.599
|
0.719
|
Hoxd9
M03284_2.00 |
Mus musculus |
DTTWAYGRB |
VYCRTWAAH |
SELEX
Jolma et al.(2013)
Hoxd9_3
|
0.599
|
0.719
|
HOXC9
M05331_2.00 |
Homo sapiens |
GTCGTAAAAN |
NTTTTACGAC |
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_1
|
0.599
|
0.719
|
HOXC9
M05332_2.00 |
Homo sapiens |
NTTTTATKRC |
GYMATAAAAN |
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_2
|
0.599
|
0.719
|
HOXD9
M05104_2.00 |
Homo sapiens |
NTTTTATKRC |
GYMATAAAAN |
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_1
|
0.599
|
0.719
|
HOXD9
M05105_2.00 |
Homo sapiens |
RTCRTAAAWN |
NWTTTAYGAY |
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_2
|
0.599
|
0.719
|
HOXD9
M05108_2.00 |
Homo sapiens |
RTCGTAAAWN |
NWTTTACGAY |
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_1
|
0.599
|
0.719
|
HOXD9
M05109_2.00 |
Homo sapiens |
NTTTTATKRC |
GYMATAAAAN |
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_2
|
0.599
|
0.719
|
Hoxc9
M08137_2.00 |
Mus musculus |
NWGATTTATDGSH |
DSCHATAAATCWN |
ChIP-seq
Mathelier et al.(2014)
MA0485.1
|
0.599
|
0.719
|
HOXC9
M09161_2.00 |
Homo sapiens |
HTTWATKGCH |
DGCMATWAAD |
Misc
Kulakovskiy et al.(2013)
HXC9_HUMAN.H11MO.0.C
|
0.599
|
0.719
|
Hoxc9
M09574_2.00 |
Mus musculus |
TGATTTATDGCH |
DGCHATAAATCA |
Misc
Heinz et al.(2010)
Ainv15-Hoxc9_GSE21812
|
0.599
|
0.719
|
HOXD9
M10686_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXD9_Q2
|
0.599
|
0.719
|
HOXC9
M05333_2.00 |
Homo sapiens |
RTCGTAAAHN |
NDTTTACGAY |
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_1
|
0.599
|
0.719
|
HOXC9
M05334_2.00 |
Homo sapiens |
NTTTWATKRC |
GYMATWAAAN |
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_2
|
0.599
|
0.719
|
HOXD9
M05106_2.00 |
Homo sapiens |
NNTTWATKRC |
GYMATWAANN |
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_1
|
0.599
|
0.719
|
HOXD9
M05107_2.00 |
Homo sapiens |
RTCGTAAANN |
NNTTTACGAY |
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_2
|
0.599
|
0.719
|
HOXD9
M05110_2.00 |
Homo sapiens |
RTCGTAAANN |
NNTTTACGAY |
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_1
|
0.599
|
0.719
|
HOXD9
M05111_2.00 |
Homo sapiens |
NDTTWATKRC |
GYMATWAAHN |
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_2
|
0.599
|
0.719
|
Hoxb9
M00410_2.00 |
Mus musculus |
NTTWAYDDNN |
NNHHRTWAAN |
PBM
Berger et al.(2008)
Hoxb9_3413
|
0.599
|
0.702
|
Hoxa9
M00475_2.00 |
Mus musculus |
NNDDBNNN |
NNNVHHNN |
PBM
Berger et al.(2008)
Hoxa9_2622
|
0.599
|
0.702
|
HOXA9
M03085_2.00 |
Homo sapiens |
NNDTTWAYGAYN |
NRTCRTWAAHNN |
SELEX
Jolma et al.(2013)
HOXA10_1
|
0.599
|
0.702
|
HOXA9
M03086_2.00 |
Homo sapiens |
NDTTWATKRYN |
NRYMATWAAHN |
SELEX
Jolma et al.(2013)
HOXA10_2
|
0.599
|
0.702
|
HOXA9
M04932_2.00 |
Homo sapiens |
NNDWWABKRC |
GYMVTWWHNN |
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_1
|
0.599
|
0.702
|
HOXA9
M04933_2.00 |
Homo sapiens |
NNDTWAYGRB |
VYCRTWAHNN |
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_2
|
0.599
|
0.702
|
HOXB9
M05289_2.00 |
Homo sapiens |
RTCRTAAAWN |
NWTTTAYGAY |
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_1
|
0.599
|
0.702
|
HOXB9
M05290_2.00 |
Homo sapiens |
NTTTWATKRC |
GYMATWAAAN |
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_2
|
0.599
|
0.702
|
Hoxa9
M08138_2.00 |
Mus musculus |
TGATTKATKRB |
VYMATMAATCA |
ChIP-seq
Mathelier et al.(2014)
MA0594.1
|
0.599
|
0.702
|
HOXA9
M09130_2.00 |
Homo sapiens |
DCATAAAYYRBH |
DVYRRTTTATGH |
Misc
Kulakovskiy et al.(2013)
HXA10_HUMAN.H11MO.0.C
|
0.599
|
0.702
|
HOXA9
M09131_2.00 |
Homo sapiens |
HHATAAATCAH |
DTGATTTATDD |
Misc
Kulakovskiy et al.(2013)
HXA9_HUMAN.H11MO.0.B
|
0.599
|
0.702
|
Hoxa9
M09203_2.00 |
Mus musculus |
HHATAAATCAH |
DTGATTTATDD |
Misc
Kulakovskiy et al.(2013)
HXA9_MOUSE.H11MO.0.B
|
0.599
|
0.702
|
Hoxa9
M09575_2.00 |
Mus musculus |
WGATTKATDRBY |
RVYHATMAATCW |
Misc
Heinz et al.(2010)
HSC-Hoxa9_GSE33509
|
0.599
|
0.702
|
HOXA9
M10642_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXA10_Q6
|
0.599
|
0.702
|
HOXA9
M10643_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXA9_04
|
0.599
|
0.702
|
HOXA9
M10644_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXA9_Q5_01
|
0.599
|
0.702
|
HOXA9
M10645_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXA9_Q5
|
0.599
|
0.702
|
HOXB9
M05291_2.00 |
Homo sapiens |
GTCGTAAAHB |
VDTTTACGAC |
SELEX
Yin et al.(2017)
HOXB9_eDBD_Methyl-HT-SELEX
|
0.599
|
0.702
|
HOXA9
M04934_2.00 |
Homo sapiens |
NNDTWAYKRC |
GYMRTWAHNN |
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_1
|
0.599
|
0.702
|
HOXA9
M04935_2.00 |
Homo sapiens |
NNDTWACGAY |
RTCGTWAHNN |
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_2
|
0.599
|
0.702
|
For this family, TFs with SR scores > 0.599 will likely have a similar motif |