HOXD13 (Homo sapiens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSG00000128714 T209836_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HOXD13
M00293_2.00
Homo sapiens
NTTWAYDDNN

NNHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_I297V
(Direct) (Direct)
HOXD13
M00294_2.00
Homo sapiens
THGTWAAW

WTTWACDA
PBM
Barrera et al.(2016)
HOXD13_I322L
(Direct) (Direct)
HOXD13
M00295_2.00
Homo sapiens
NTTWAYDDN

NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_N298S
(Direct) (Direct)
HOXD13
M00296_2.00
Homo sapiens
GKATAAAH

DTTTATMC
PBM
Barrera et al.(2016)
HOXD13_Q325K
(Direct) (Direct)
HOXD13
M00297_2.00
Homo sapiens
NWTWRKNNNN

NNNNMYWAWN
PBM
Barrera et al.(2016)
HOXD13_Q325R
(Direct) (Direct)
HOXD13
M00298_2.00
Homo sapiens
NTTWAYDDN

NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_R306W
(Direct) (Direct)
HOXD13
M00299_2.00
Homo sapiens
NTTWAYDDN

NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_REF
(Direct) (Direct)
HOXD13
M00300_2.00
Homo sapiens
WTTTATDR

YHATAAAW
PBM
Barrera et al.(2016)
HOXD13_S316C
(Direct) (Direct)
HOXD13
M03141_2.00
Homo sapiens
DTTTTATKRS

SYMATAAAAH
SELEX
Jolma et al.(2013)
HOXD13_1
(Direct) (Direct)
HOXD13
M03142_2.00
Homo sapiens
BCTCGTAAAAH

DTTTTACGAGV
SELEX
Jolma et al.(2013)
HOXD13_2
(Direct) (Direct)
HOXD13
M05122_2.00
Homo sapiens
GKTTTATKGSS

SSCMATAAAMC
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_1
(Direct) (Direct)
HOXD13
M05123_2.00
Homo sapiens
BCTCGTAAAMH

DKTTTACGAGV
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_2
(Direct) (Direct)
HOXD13
M05124_2.00
Homo sapiens
DDTTTATTRBB

VVYAATAAAHH
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_1
(Direct) (Direct)
HOXD13
M05125_2.00
Homo sapiens
VCTCGTAAAAH

DTTTTACGAGB
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_2
(Direct) (Direct)
HOXD13
M10689_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD13_Q6
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hoxd13
M00394_2.00
Mus musculus
NWTHRYDDN

NHHRYDAWN
PBM
Berger et al.(2008)
Hoxd13_2356
0.867 1.000
Hoxd13
M03247_2.00
Mus musculus
DKTTTATTRS

SYAATAAAMH
SELEX
Jolma et al.(2013)
Hoxd13_1
0.867 1.000
Hoxd13
M03248_2.00
Mus musculus
DDTTTAYKAGN

NCTMRTAAAHH
SELEX
Jolma et al.(2013)
Hoxd13_2
0.867 1.000
hoxd13a
M02081_2.00
Danio rerio
WTTTATDR

YHATAAAW
PBM
Weirauch et al.(2014)
pTH6143
0.848 0.807
Hoxa13
M00473_2.00
Mus musculus
NTTWAYDRN

NYHRTWAAN
PBM
Berger et al.(2008)
Hoxa13_3126
0.834 0.895
HOXA13
M03098_2.00
Homo sapiens
DKTTTATKRS

SYMATAAAMH
SELEX
Jolma et al.(2013)
HOXA13_1
0.834 0.895
HOXA13
M03099_2.00
Homo sapiens
NCTCGTAAAHN

NDTTTACGAGN
SELEX
Jolma et al.(2013)
HOXA13_2
0.834 0.895
HOXA13
M03100_2.00
Homo sapiens
DKTTTATKRS

SYMATAAAMH
SELEX
Jolma et al.(2013)
HOXA13_3
0.834 0.895
HOXA13
M03101_2.00
Homo sapiens
NCTCGTAAAAH

DTTTTACGAGN
SELEX
Jolma et al.(2013)
HOXA13_4
0.834 0.895
HOXA13
M04977_2.00
Homo sapiens
DTTTTATKGGB

VCCMATAAAAH
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_1
0.834 0.895
HOXA13
M04978_2.00
Homo sapiens
NCTCGTAAAHN

NDTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_2
0.834 0.895
HOXA13
M04981_2.00
Homo sapiens
DTTTTATKRSN

NSYMATAAAAH
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_1
0.834 0.895
HOXA13
M04982_2.00
Homo sapiens
NCTCGTAAAWH

DWTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_2
0.834 0.895
HOXA13
M09134_2.00
Homo sapiens
VDTWTWATKGS

SCMATWAWAHB
Misc
Kulakovskiy et al.(2013)
HXA13_HUMAN.H11MO.0.C
0.834 0.895
Hoxa13
M09202_2.00
Mus musculus
VDTWTWATKGS

SCMATWAWAHB
Misc
Kulakovskiy et al.(2013)
HXA13_MOUSE.H11MO.0.C
0.834 0.895
HOXA13
M10653_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA13_01
0.834 0.895
HOXA13
M10654_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA13_02
0.834 0.895
HOXA13
M04979_2.00
Homo sapiens
DTTTTATTRSN

NSYAATAAAAH
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_1
0.834 0.895
HOXA13
M04980_2.00
Homo sapiens
NCTCGTAAAHN

NDTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_2
0.834 0.895
HOXA13
M04983_2.00
Homo sapiens
DKTTTATTGBN

NVCAATAAAMH
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_1
0.834 0.895
HOXA13
M04984_2.00
Homo sapiens
NCTCGTAAAWH

DWTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_2
0.834 0.895
Hoxc13
M00389_2.00
Mus musculus
NTTWAYDRNN

NNYHRTWAAN
PBM
Berger et al.(2008)
Hoxc13_3127
0.834 0.860
HOXC13
M03129_2.00
Homo sapiens
NTTTTATTRS

SYAATAAAAN
SELEX
Jolma et al.(2013)
HOXC13_1
0.834 0.860
HOXC13
M03130_2.00
Homo sapiens
NCTCGTAAAAH

DTTTTACGAGN
SELEX
Jolma et al.(2013)
HOXC13_2
0.834 0.860
HOXC13
M05072_2.00
Homo sapiens
RKTTTATKGSN

NSCMATAAAMY
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_1
0.834 0.860
HOXC13
M05073_2.00
Homo sapiens
BCTCGTAAAMH

DKTTTACGAGV
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_2
0.834 0.860
HOXC13
M10680_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXC13_Q2
0.834 0.860
HOXC13
M05074_2.00
Homo sapiens
BCTCGTAAAAH

DTTTTACGAGV
SELEX
Yin et al.(2017)
HOXC13_eDBD_Methyl-HT-SELEX
0.834 0.860
HOXB13
M02092_2.00
Homo sapiens
NTTWAYDDNN

NNHHRTWAAN
PBM
Weirauch et al.(2014)
pTH5808
0.704 0.807
Hoxb13
M00505_2.00
Mus musculus
NTTWAYDDNN

NNHHRTWAAN
PBM
Berger et al.(2008)
Hoxb13_3479
0.704 0.807
HOXB13
M03175_2.00
Homo sapiens
DTTTTATKGG

CCMATAAAAH
SELEX
Jolma et al.(2013)
HOXB13_1
0.704 0.807
HOXB13
M03176_2.00
Homo sapiens
BCTCGTAAAAH

DTTTTACGAGV
SELEX
Jolma et al.(2013)
HOXB13_2
0.704 0.807
HOXB13
M05201_2.00
Homo sapiens
DTTTTATKGGN

NCCMATAAAAH
SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_1
0.704 0.807
HOXB13
M05202_2.00
Homo sapiens
NCTCGTAAAHH

DDTTTACGAGN
SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_2
0.704 0.807
HOXB13
M09149_2.00
Homo sapiens
TTTTATDRSN

NSYHATAAAA
Misc
Kulakovskiy et al.(2013)
HXB13_HUMAN.H11MO.0.A
0.704 0.807
HOXB13
M05203_2.00
Homo sapiens
NCTCGTAAAAH

DTTTTACGAGN
SELEX
Yin et al.(2017)
HOXB13_eDBD_Methyl-HT-SELEX
0.704 0.807
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00293_2.00 Homeodomain 15 71
M00294_2.00 Homeodomain 15 71
M00295_2.00 Homeodomain 15 71
M00296_2.00 Homeodomain 15 71
M00297_2.00 Homeodomain 15 71
M00298_2.00 Homeodomain 15 71
M00299_2.00 Homeodomain 15 71
M00300_2.00 Homeodomain 15 71

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000376322 Homeodomain 277 333

Links

Other Homeodomain family TFs
Other Homo sapiens TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action