CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HOXD13
(
Homo sapiens
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSG00000128714
T209836_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, located on different chromosomes, consisting of 9 to 11 genes arranged in tandem. This gene is one of several homeobox HOXD genes located in a cluster on chromosome 2. Deletions that remove the entire HOXD gene cluster or the 5' end of this cluster have been associated with severe limb and genital abnormalities. Mutations in this particular gene cause synpolydactyly. [provided by RefSeq, Jul 2008]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HOXD13
M00293_2.00
Homo sapiens
NTTWAYDDNN
NNHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_I297V
(Direct)
(Direct)
HOXD13
M00294_2.00
Homo sapiens
THGTWAAW
WTTWACDA
PBM
Barrera et al.(2016)
HOXD13_I322L
(Direct)
(Direct)
HOXD13
M00295_2.00
Homo sapiens
NTTWAYDDN
NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_N298S
(Direct)
(Direct)
HOXD13
M00296_2.00
Homo sapiens
GKATAAAH
DTTTATMC
PBM
Barrera et al.(2016)
HOXD13_Q325K
(Direct)
(Direct)
HOXD13
M00297_2.00
Homo sapiens
NWTWRKNNNN
NNNNMYWAWN
PBM
Barrera et al.(2016)
HOXD13_Q325R
(Direct)
(Direct)
HOXD13
M00298_2.00
Homo sapiens
NTTWAYDDN
NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_R306W
(Direct)
(Direct)
HOXD13
M00299_2.00
Homo sapiens
NTTWAYDDN
NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_REF
(Direct)
(Direct)
HOXD13
M00300_2.00
Homo sapiens
WTTTATDR
YHATAAAW
PBM
Barrera et al.(2016)
HOXD13_S316C
(Direct)
(Direct)
HOXD13
M03141_2.00
Homo sapiens
DTTTTATKRS
SYMATAAAAH
SELEX
Jolma et al.(2013)
HOXD13_1
(Direct)
(Direct)
HOXD13
M03142_2.00
Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV
SELEX
Jolma et al.(2013)
HOXD13_2
(Direct)
(Direct)
HOXD13
M05122_2.00
Homo sapiens
GKTTTATKGSS
SSCMATAAAMC
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_1
(Direct)
(Direct)
HOXD13
M05123_2.00
Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_2
(Direct)
(Direct)
HOXD13
M05124_2.00
Homo sapiens
DDTTTATTRBB
VVYAATAAAHH
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_1
(Direct)
(Direct)
HOXD13
M05125_2.00
Homo sapiens
VCTCGTAAAAH
DTTTTACGAGB
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_2
(Direct)
(Direct)
HOXD13
M10689_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD13_Q6
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hoxd13
M00394_2.00
Mus musculus
NWTHRYDDN
NHHRYDAWN
PBM
Berger et al.(2008)
Hoxd13_2356
0.867
1.000
Hoxd13
M03247_2.00
Mus musculus
DKTTTATTRS
SYAATAAAMH
SELEX
Jolma et al.(2013)
Hoxd13_1
0.867
1.000
Hoxd13
M03248_2.00
Mus musculus
DDTTTAYKAGN
NCTMRTAAAHH
SELEX
Jolma et al.(2013)
Hoxd13_2
0.867
1.000
hoxd13a
M02081_2.00
Danio rerio
WTTTATDR
YHATAAAW
PBM
Weirauch et al.(2014)
pTH6143
0.848
0.807
Hoxa13
M00473_2.00
Mus musculus
NTTWAYDRN
NYHRTWAAN
PBM
Berger et al.(2008)
Hoxa13_3126
0.834
0.895
HOXA13
M03098_2.00
Homo sapiens
DKTTTATKRS
SYMATAAAMH
SELEX
Jolma et al.(2013)
HOXA13_1
0.834
0.895
HOXA13
M03099_2.00
Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN
SELEX
Jolma et al.(2013)
HOXA13_2
0.834
0.895
HOXA13
M03100_2.00
Homo sapiens
DKTTTATKRS
SYMATAAAMH
SELEX
Jolma et al.(2013)
HOXA13_3
0.834
0.895
HOXA13
M03101_2.00
Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN
SELEX
Jolma et al.(2013)
HOXA13_4
0.834
0.895
HOXA13
M04977_2.00
Homo sapiens
DTTTTATKGGB
VCCMATAAAAH
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_1
0.834
0.895
HOXA13
M04978_2.00
Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_2
0.834
0.895
HOXA13
M04981_2.00
Homo sapiens
DTTTTATKRSN
NSYMATAAAAH
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_1
0.834
0.895
HOXA13
M04982_2.00
Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_2
0.834
0.895
HOXA13
M09134_2.00
Homo sapiens
VDTWTWATKGS
SCMATWAWAHB
Misc
Kulakovskiy et al.(2013)
HXA13_HUMAN.H11MO.0.C
0.834
0.895
Hoxa13
M09202_2.00
Mus musculus
VDTWTWATKGS
SCMATWAWAHB
Misc
Kulakovskiy et al.(2013)
HXA13_MOUSE.H11MO.0.C
0.834
0.895
HOXA13
M10653_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA13_01
0.834
0.895
HOXA13
M10654_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA13_02
0.834
0.895
HOXA13
M04979_2.00
Homo sapiens
DTTTTATTRSN
NSYAATAAAAH
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_1
0.834
0.895
HOXA13
M04980_2.00
Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_2
0.834
0.895
HOXA13
M04983_2.00
Homo sapiens
DKTTTATTGBN
NVCAATAAAMH
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_1
0.834
0.895
HOXA13
M04984_2.00
Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_2
0.834
0.895
Hoxc13
M00389_2.00
Mus musculus
NTTWAYDRNN
NNYHRTWAAN
PBM
Berger et al.(2008)
Hoxc13_3127
0.834
0.860
HOXC13
M03129_2.00
Homo sapiens
NTTTTATTRS
SYAATAAAAN
SELEX
Jolma et al.(2013)
HOXC13_1
0.834
0.860
HOXC13
M03130_2.00
Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN
SELEX
Jolma et al.(2013)
HOXC13_2
0.834
0.860
HOXC13
M05072_2.00
Homo sapiens
RKTTTATKGSN
NSCMATAAAMY
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_1
0.834
0.860
HOXC13
M05073_2.00
Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_2
0.834
0.860
HOXC13
M10680_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXC13_Q2
0.834
0.860
HOXC13
M05074_2.00
Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV
SELEX
Yin et al.(2017)
HOXC13_eDBD_Methyl-HT-SELEX
0.834
0.860
HOXB13
M02092_2.00
Homo sapiens
NTTWAYDDNN
NNHHRTWAAN
PBM
Weirauch et al.(2014)
pTH5808
0.704
0.807
Hoxb13
M00505_2.00
Mus musculus
NTTWAYDDNN
NNHHRTWAAN
PBM
Berger et al.(2008)
Hoxb13_3479
0.704
0.807
HOXB13
M03175_2.00
Homo sapiens
DTTTTATKGG
CCMATAAAAH
SELEX
Jolma et al.(2013)
HOXB13_1
0.704
0.807
HOXB13
M03176_2.00
Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV
SELEX
Jolma et al.(2013)
HOXB13_2
0.704
0.807
HOXB13
M05201_2.00
Homo sapiens
DTTTTATKGGN
NCCMATAAAAH
SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_1
0.704
0.807
HOXB13
M05202_2.00
Homo sapiens
NCTCGTAAAHH
DDTTTACGAGN
SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_2
0.704
0.807
HOXB13
M09149_2.00
Homo sapiens
TTTTATDRSN
NSYHATAAAA
Misc
Kulakovskiy et al.(2013)
HXB13_HUMAN.H11MO.0.A
0.704
0.807
HOXB13
M05203_2.00
Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN
SELEX
Yin et al.(2017)
HOXB13_eDBD_Methyl-HT-SELEX
0.704
0.807
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00293_2.00
Homeodomain
15
71
RKKRVPYTKLQLKELENEYAINKFVNKDKRRRISAATNLSERQVTIWFQNRRVKDKK
M00294_2.00
Homeodomain
15
71
RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTLWFQNRRVKDKK
M00295_2.00
Homeodomain
15
71
RKKRVPYTKLQLKELENEYAINKFISKDKRRRISAATNLSERQVTIWFQNRRVKDKK
M00296_2.00
Homeodomain
15
71
RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFKNRRVKDKK
M00297_2.00
Homeodomain
15
71
RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFRNRRVKDKK
M00298_2.00
Homeodomain
15
71
RKKRVPYTKLQLKELENEYAINKFINKDKWRRISAATNLSERQVTIWFQNRRVKDKK
M00299_2.00
Homeodomain
15
71
RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK
M00300_2.00
Homeodomain
15
71
RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLCERQVTIWFQNRRVKDKK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000376322
Homeodomain
277
333
RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK
Links
Other
Homeodomain
family TFs
Other
Homo sapiens
TFs
266 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy