CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POU6F1
(
Homo sapiens
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00157 (Pou)
IPR000327
ENSG00000184271
T209926_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
POU6F1
M02094_2.00
Homo sapiens
VNTAATTANB
VNTAATTANB
PBM
Weirauch et al.(2014)
pTH6519
(Direct)
(Direct)
POU6F1
M05349_2.00
Homo sapiens
NATTATGNNNNVSATAATN
NATTATSBNNNNCATAATN
SELEX
Yin et al.(2017)
POU6F1_FL_HT-SELEX_1
(Direct)
(Direct)
POU6F1
M05350_2.00
Homo sapiens
NTAATKABRTRBNN
NNVYAYVTMATTAN
SELEX
Yin et al.(2017)
POU6F1_FL_HT-SELEX_2
(Direct)
(Direct)
POU6F1
M05351_2.00
Homo sapiens
DTAATGAKNN
NNMTCATTAH
SELEX
Yin et al.(2017)
POU6F1_FL_HT-SELEX_3
(Direct)
(Direct)
POU6F1
M05352_2.00
Homo sapiens
TATGCNNNGCATA
TATGCNNNGCATA
SELEX
Yin et al.(2017)
POU6F1_FL_HT-SELEX_4
(Direct)
(Direct)
POU6F1
M05353_2.00
Homo sapiens
NTAATGAKATGCRN
NYGCATMTCATTAN
SELEX
Yin et al.(2017)
POU6F1_FL_Methyl-HT-SELEX_1
(Direct)
(Direct)
POU6F1
M05354_2.00
Homo sapiens
DTAATGAGVD
HBCTCATTAH
SELEX
Yin et al.(2017)
POU6F1_FL_Methyl-HT-SELEX_2
(Direct)
(Direct)
POU6F1
M05355_2.00
Homo sapiens
DTATGHTAATKAKN
NMTMATTADCATAH
SELEX
Yin et al.(2017)
POU6F1_FL_Methyl-HT-SELEX_3
(Direct)
(Direct)
POU6F1
M05356_2.00
Homo sapiens
TAATKAKNNNTAATKA
TMATTANNNMTMATTA
SELEX
Yin et al.(2017)
POU6F1_FL_Methyl-HT-SELEX_4
(Direct)
(Direct)
POU6F1
M10746_2.00
Homo sapiens
GCATAAWTTAT
ATAAWTTATGC
Transfac
Matys et al.(2006)
V$POU6F1_01
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
pdm3
M02127_2.00
Drosophila melanogaster
CTAATTAN
NTAATTAG
PBM
Weirauch et al.(2014)
pTH6769
0.703
0.684
Pou1f1
M02238_2.00
Mus musculus
NTAATKHNN
NNDMATTAN
PBM
Weirauch et al.(2014)
pTH6507
0.637
0.526
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02094_2.00
Homeodomain
1
57
RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKN
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000330190
POU
142
213
INLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAE
ENSP00000330190
Homeodomain
235
291
RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKN
ENSP00000373895
POU
142
213
INLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAE
ENSP00000373895
Homeodomain
235
291
RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKN
ENSP00000448389
Homeodomain
235
291
RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKN
Links
Other
Homeodomain
family TFs
Other
Homo sapiens
TFs
48 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy