hlx1 (Gasterosteus aculeatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGACG00000010057 T210089_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hlx
M00485_2.00
Mus musculus
NNNAWND

HNWTNNN
PBM
Berger et al.(2008)
Hlx1_2350
0.867 1.000
H2.0
M06489_2.00
Drosophila melanogaster
WTWATDA

THATWAW
B1H
Mathelier et al.(2014)
MA0448.1
0.847 0.842
H2.0
M06250_2.00
Drosophila melanogaster
TWWWWDA

THAWWWA
B1H
Zhu et al.(2011)
H2.0_Cell_FBgn0001170
0.847 0.842
H2.0
M06251_2.00
Drosophila melanogaster
WTWATTRN

NYAATWAW
B1H
Zhu et al.(2011)
H2.0_SOLEXA_FBgn0001170
0.847 0.842
Dbx
M02128_2.00
Drosophila melanogaster
WTTAATTA

TAATTAAW
PBM
Weirauch et al.(2014)
pTH6051
0.733 0.719
Dbx
M06550_2.00
Drosophila melanogaster
TTWATKA

TMATWAA
B1H
Mathelier et al.(2014)
MA0174.1
0.733 0.719
Dbx1
M00451_2.00
Mus musculus
WTTAATTA

TAATTAAW
PBM
Berger et al.(2008)
Dbx1_3486
0.733 0.684
Dbx2
M00499_2.00
Mus musculus
NNDTNNN

NNNAHNN
PBM
Berger et al.(2008)
Dbx2_3487
0.713 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000013281 Homeodomain 220 276

Links

Other Homeodomain family TFs
Other Gasterosteus aculeatus TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Dbx2 Mus musculus ENSMUSG00000045608 D 0.713
Hlx Mus musculus ENSMUSG00000039377 D 0.867
Dbx1 Mus musculus ENSMUSG00000030507 D 0.733
H2.0 Drosophila melanogaster FBgn0001170 D 0.847
Dbx Drosophila melanogaster FBgn0261723 D 0.733
KGM_21891 Danaus plexippus KGM_21891 I 0.854
GH10711 Drosophila grimshawi FBgn0118192 I 0.847
GH16166 Drosophila grimshawi FBgn0123637 I 0.733
GI11292 Drosophila mojavensis FBgn0134053 I 0.847
GI13319 Drosophila mojavensis FBgn0136076 I 0.733
GG14836 Drosophila erecta FBgn0107091 I 0.733
GG10151 Drosophila erecta FBgn0102462 I 0.847
GF20095 Drosophila ananassae FBgn0097102 I 0.733
GF14286 Drosophila ananassae FBgn0091313 I 0.847
GA11582 Drosophila pseudoobscura FBgn0071633 I 0.733
GA11095 Drosophila pseudoobscura FBgn0071150 I 0.847
GL19089 Drosophila persimilis FBgn0156689 I 0.847
GL25317 Drosophila persimilis FBgn0162901 I 0.733
KGM_12383 Danaus plexippus KGM_12383 I 0.733
ISCW020093 Ixodes scapularis ISCW020093 I 0.736
HelroG148518 Helobdella robusta HelroG148518 I 0.794
GB49362 Apis mellifera GB49362 I 0.736
GB42897 Apis mellifera GB42897 I 0.845
GE21201 Drosophila yakuba FBgn0238476 I 0.733
GE18959 Drosophila yakuba FBgn0236329 I 0.847
GK15402 Drosophila willistoni FBgn0217407 I 0.847
GK12528 Drosophila willistoni FBgn0214538 I 0.733
GJ12503 Drosophila virilis FBgn0199743 I 0.847
GJ12089 Drosophila virilis FBgn0199341 I 0.733
GD22610 Drosophila simulans FBgn0194011 I 0.847
GM17974 Drosophila sechellia FBgn0172881 I 0.847
GM14459 Drosophila sechellia FBgn0169382 I 0.733
ENSXMAG00000017389 Xiphophorus maculatus ENSXMAG00000017389 I 0.867
ENSXMAG00000010186 Xiphophorus maculatus ENSXMAG00000010186 I 0.733
ENSXMAG00000006476 Xiphophorus maculatus ENSXMAG00000006476 I 0.733
ENSSTOG00000000232 Ictidomys tridecemlineatus ENSSTOG00000000232 I 0.713
DBX1 Sus scrofa ENSSSCG00000013350 I 0.733
ENSSSCG00000010830 Sus scrofa ENSSSCG00000010830 I 0.867
ENSSHAG00000012659 Sarcophilus harrisii ENSSHAG00000012659 I 0.711
ENSSHAG00000012054 Sarcophilus harrisii ENSSHAG00000012054 I 0.867
ENSSHAG00000011774 Sarcophilus harrisii ENSSHAG00000011774 I 0.733
HLX Sorex araneus ENSSARG00000009476 I 0.326
ENSSARG00000007797 Sorex araneus ENSSARG00000007797 I 0.713
Dbx1 Rattus norvegicus ENSRNOG00000014706 I 0.733
Dbx2 Rattus norvegicus ENSRNOG00000006885 I 0.713
Hlx Rattus norvegicus ENSRNOG00000002309 I 0.867
HLX Pteropus vampyrus ENSPVAG00000004552 I 0.867
DBX2 Pan troglodytes ENSPTRG00000004849 I 0.713
HLX Pan troglodytes ENSPTRG00000002004 I 0.867
ENSSTOG00000006326 Ictidomys tridecemlineatus ENSSTOG00000006326 I 0.867
ENSSTOG00000015557 Ictidomys tridecemlineatus ENSSTOG00000015557 I 0.733
DBX2 Tupaia belangeri ENSTBEG00000012639 I 0.713
ENSXMAG00000004689 Xiphophorus maculatus ENSXMAG00000004689 I 0.711
ENSVPAG00000000460 Vicugna pacos ENSVPAG00000000460 I 0.713
DBX2 Tursiops truncatus ENSTTRG00000003582 I 0.713
ENSTSYG00000001451 Tarsius syrichta ENSTSYG00000001451 I 0.713
ENSTRUG00000016696 Takifugu rubripes ENSTRUG00000016696 I 0.711
dbx1b Takifugu rubripes ENSTRUG00000015886 I 0.733
hlx1 Takifugu rubripes ENSTRUG00000006753 I 0.867
hlx1 Tetraodon nigroviridis ENSTNIG00000016400 I 0.867
ENSTNIG00000015979 Tetraodon nigroviridis ENSTNIG00000015979 I 0.711
dbx1b Tetraodon nigroviridis ENSTNIG00000009613 I 0.733
DBX1 Tetraodon nigroviridis ENSTNIG00000004855 I 0.732
DBX1 Taeniopygia guttata ENSTGUG00000015791 I 0.733
DBX2 Taeniopygia guttata ENSTGUG00000006020 I 0.713
HLX Tupaia belangeri ENSTBEG00000014384 I 0.867
ENSPSIG00000013519 Pelodiscus sinensis ENSPSIG00000013519 I 0.867
nRc.2.0.1.g17174 Romanomermis culicivorax nRc.2.0.1.g17174 I 0.728
LCUP007749 Lucilia cuprina LCUP007749 I 0.847
HHAL002166-PA Halyomorpha halys HHAL002166-PA I 0.845
CLEC011407 Cimex lectularius CLEC011407 I 0.849
Sakowv30044972m.g Saccoglossus kowalevskii Sakowv30044972m.g I 0.733
Sakowv30040055m.g Saccoglossus kowalevskii Sakowv30040055m.g I 0.855
Ocbimv22005553m.g Octopus bimaculoides Ocbimv22005553m.g I 0.733
gw.83.80.1 Branchiostoma floridae gw.83.80.1 I 0.812
gw.473.22.1 Branchiostoma floridae gw.473.22.1 I 0.812
fgenesh2_pg.scaffold_222000058 Branchiostoma floridae fgenesh2_pg.scaffold_222000058 I 0.733
Tal_R010631 Tyto alba Tal_R010631 I 0.733
Tal_R005491 Tyto alba Tal_R005491 I 0.713
Pvit_13000 Pogona vitticeps Pvit_13000 I 0.867
Pvit_11516 Pogona vitticeps Pvit_11516 I 0.711
Pvit_06412 Pogona vitticeps Pvit_06412 I 0.733
LDEC019190 Leptinotarsa decemlineata LDEC019190 I 0.736
dbx1 Xenopus tropicalis XB-GENE-480177 I 0.733
dbx2 Xenopus tropicalis XB-GENE-481734 I 0.711
D917_00900 Trichinella nativa D917_00900 I 0.617
MDOA015219 Musca domestica MDOA015219 I 0.733
MDOA007091 Musca domestica MDOA007091 I 0.847
LLOJ006552 Lutzomyia longipalpis LLOJ006552 I 0.733
BGLB013811 Biomphalaria glabrata BGLB013811 I 0.733
ASIS013776 Anopheles sinensis ASIS013776 I 0.845
AMEM006151 Anopheles merus AMEM006151 I 0.733
AFUN003184 Anopheles funestus AFUN003184 I 0.845
ADIR004110 Anopheles dirus ADIR004110 I 0.845
ACOM031223 Anopheles coluzzii ACOM031223 I 0.733
AATE018929 Anopheles atroparvus AATE018929 I 0.733
dbx1.S Xenopus laevis XB-GENE-865351 I 0.733
dbx2.L Xenopus laevis XB-GENE-6486281 I 0.711
hlx Xenopus tropicalis XB-GENE-483226 I 0.862
Ogr19305 Ophisaurus gracilis Ogr19305 I 0.867
Myotis_brandtii_DBX2_10029487 Myotis brandtii Myotis_brandtii_DBX2_10029487 I 0.713
Hsal_11910--XP_001121170.1_APIME Harpegnathos saltator Hsal_11910--XP_001121170.1_APIME I 0.845
tetur05g09190 Tetranychus urticae tetur05g09190 I 0.732
TC015146 Tribolium castaneum TC015146 I 0.737
TC008368 Tribolium castaneum TC008368 I 0.849
SPU_014802 Strongylocentrotus purpuratus SPU_014802 I 0.851
SMAR002236 Strigamia maritima SMAR002236 I 0.854
SINV11867 Solenopsis invicta SINV11867 I 0.845
RPRC010617 Rhodnius prolixus RPRC010617 I 0.849
PHUM604510 Pediculus humanus PHUM604510 I 0.849
PHUM365830 Pediculus humanus PHUM365830 I 0.737
NV18099 Nasonia vitripennis NV18099 I 0.732
NEMVEDRAFT_v1g80365 Nematostella vectensis NEMVEDRAFT_v1g80365 I 0.767
NEMVEDRAFT_v1g100892 Nematostella vectensis NEMVEDRAFT_v1g100892 I 0.767
LotgiG80492 Lottia gigantea LotgiG80492 I 0.809
LotgiG64310 Lottia gigantea LotgiG64310 I 0.733
tetur22g00030 Tetranychus urticae tetur22g00030 I 0.662
TriadG18102 Trichoplax adhaerens TriadG18102 I 0.731
YQE_05944 Dendroctonus ponderosae YQE_05944 I 0.737
Gfo_R004056 Geospiza fortis Gfo_R004056 I 0.713
ENSP00000331470 Macaca fascicularis ENSP00000331470 I 0.713
ENSP00000331470-D1 Bos grunniens ENSP00000331470-D1 I 0.713
ENSBTAP00000019352-D1 Bos grunniens ENSBTAP00000019352-D1 I 0.867
ENSBTAP00000003543-D1 Bos grunniens ENSBTAP00000003543-D1 I 0.733
Cmyd_10016425 Chelonia mydas Cmyd_10016425 I 0.733
Cflo_10458--XP_001121170.1_APIME Camponotus floridanus Cflo_10458--XP_001121170.1_APIME I 0.845
Brh_R003637 Buceros rhinoceros Brh_R003637 I 0.713
Brh_R002799 Buceros rhinoceros Brh_R002799 I 0.733
Alligator_sinensis_CCG013033.1 Alligator sinensis Alligator_sinensis_CCG013033.1 I 0.733
Afo_R010414 Aptenodytes forsteri Afo_R010414 I 0.733
Afo_R000355 Aptenodytes forsteri Afo_R000355 I 0.713
Aan_R012348 Calypte anna Aan_R012348 I 0.713
Aan_R006646 Calypte anna Aan_R006646 I 0.733
L798_13412 Zootermopsis nevadensis L798_13412 I 0.849
ENSPSIG00000012138 Pelodiscus sinensis ENSPSIG00000012138 I 0.733
ENSGACG00000004000 Gasterosteus aculeatus ENSGACG00000004000 I 0.711
DBX1 Dasypus novemcinctus ENSDNOG00000015450 I 0.733
HLX Dasypus novemcinctus ENSDNOG00000007014 I 0.867
CABZ01093502.1 Danio rerio ENSDARG00000105053 I 0.709
dbx1a Danio rerio ENSDARG00000086393 I 0.733
nanog Danio rerio ENSDARG00000075113 I 0.609
hlx1 Danio rerio ENSDARG00000009134 I 0.867
dbx1b Danio rerio ENSDARG00000001859 I 0.733
ENSCSAG00000015879 Chlorocebus sabaeus ENSCSAG00000015879 I 0.867
ENSCSAG00000005115 Chlorocebus sabaeus ENSCSAG00000005115 I 0.733
HLX Cavia porcellus ENSCPOG00000024028 I 0.867
DBX1 Cavia porcellus ENSCPOG00000019811 I 0.733
ENSCPOG00000011069 Cavia porcellus ENSCPOG00000011069 I 0.713
DBX2 Callithrix jacchus ENSCJAG00000013213 I 0.713
DBX1 Callithrix jacchus ENSCJAG00000006734 I 0.733
DBX2 Dasypus novemcinctus ENSDNOG00000046429 I 0.713
Hlx Dipodomys ordii ENSDORG00000001941 I 0.867
ENSGACG00000000220 Gasterosteus aculeatus ENSGACG00000000220 I 0.733
DBX2 Homo sapiens ENSG00000185610 I 0.713
HLX Homo sapiens ENSG00000136630 I 0.867
DBX1 Homo sapiens ENSG00000109851 I 0.733
DBX1 Felis catus ENSFCAG00000028654 I 0.733
HLX Felis catus ENSFCAG00000002974 I 0.802
ENSFALG00000010170 Ficedula albicollis ENSFALG00000010170 I 0.713
ENSFALG00000001676 Ficedula albicollis ENSFALG00000001676 I 0.733
HLX Echinops telfairi ENSETEG00000003298 I 0.326
ENSEEUG00000006518 Erinaceus europaeus ENSEEUG00000006518 I 0.697
HLX Erinaceus europaeus ENSEEUG00000004973 I 0.867
DBX1 Equus caballus ENSECAG00000019994 I 0.733
DBX2 Equus caballus ENSECAG00000012695 I 0.713
HLX Equus caballus ENSECAG00000003025 I 0.867
HLX Callithrix jacchus ENSCJAG00000006110 I 0.867
hlx Ciona intestinalis ENSCING00000019191 I 0.773
ENSCING00000012835 Ciona intestinalis ENSCING00000012835 I 0.733
ENSACAG00000002581 Anolis carolinensis ENSACAG00000002581 I 0.713
EFV57815 Trichinella spiralis EFV57815 I 0.617
DAPPUDRAFT_53297 Daphnia pulex DAPPUDRAFT_53297 I 0.775
DAPPUDRAFT_37379 Daphnia pulex DAPPUDRAFT_37379 I 0.736
CGI_10013972 Crassostrea gigas CGI_10013972 I 0.862
CGI_10002480 Crassostrea gigas CGI_10002480 I 0.733
CapteG220261 Capitella teleta CapteG220261 I 0.733
CapteG173964 Capitella teleta CapteG173964 I 0.818
BGIBMGA008482 Bombyx mori BGIBMGA008482 I 0.854
AGAP005727 Anopheles gambiae AGAP005727 I 0.733
ACYPI48371 Acyrthosiphon pisum ACYPI48371 I 0.727
ACYPI27939 Acyrthosiphon pisum ACYPI27939 I 0.731
ACEP14997 Atta cephalotes ACEP14997 I 0.845
AAEL012150 Aedes aegypti AAEL012150 I 0.773
ENSACAG00000015317 Anolis carolinensis ENSACAG00000015317 I 0.607
DBX1 Anolis carolinensis ENSACAG00000015625 I 0.733
HLX Canis familiaris ENSCAFG00000011340 I 0.867
ENSCAFG00000009372 Canis familiaris ENSCAFG00000009372 I 0.713
HLX Bos taurus ENSBTAG00000014560 I 0.867
DBX2 Bos taurus ENSBTAG00000006635 I 0.713
DBX1 Bos taurus ENSBTAG00000002733 I 0.733
ENSAPLG00000013752 Anas platyrhynchos ENSAPLG00000013752 I 0.733
ENSAPLG00000011161 Anas platyrhynchos ENSAPLG00000011161 I 0.713
ENSAMXG00000016737 Astyanax mexicanus ENSAMXG00000016737 I 0.733
ENSAMXG00000014548 Astyanax mexicanus ENSAMXG00000014548 I 0.711
ENSAMXG00000013419 Astyanax mexicanus ENSAMXG00000013419 I 0.867
ENSAMXG00000012905 Astyanax mexicanus ENSAMXG00000012905 I 0.733
ENSAMXG00000009415 Astyanax mexicanus ENSAMXG00000009415 I 0.645
ENSAMEG00000015811 Ailuropoda melanoleuca ENSAMEG00000015811 I 0.713
ENSAMEG00000010272 Ailuropoda melanoleuca ENSAMEG00000010272 I 0.867
AAEL005974 Aedes aegypti AAEL005974 I 0.733
DBX1 Gasterosteus aculeatus ENSGACG00000014112 I 0.733
ENSPSIG00000009557 Pelodiscus sinensis ENSPSIG00000009557 I 0.711
dbx1b Oryzias latipes ENSORLG00000000807 I 0.733
HLX Ochotona princeps ENSOPRG00000011504 I 0.811
ENSONIG00000012709 Oreochromis niloticus ENSONIG00000012709 I 0.731
ENSONIG00000008764 Oreochromis niloticus ENSONIG00000008764 I 0.711
ENSONIG00000007144 Oreochromis niloticus ENSONIG00000007144 I 0.733
ENSONIG00000005980 Oreochromis niloticus ENSONIG00000005980 I 0.867
DBX1 Otolemur garnettii ENSOGAG00000014591 I 0.733
HLX Otolemur garnettii ENSOGAG00000012065 I 0.867
DBX2 Otolemur garnettii ENSOGAG00000008999 I 0.713
ENSOCUG00000022068 Oryctolagus cuniculus ENSOCUG00000022068 I 0.713
DBX1 Oryctolagus cuniculus ENSOCUG00000007615 I 0.733
HLX Oryctolagus cuniculus ENSOCUG00000006015 I 0.867
ENSOARG00000019598 Ovis aries ENSOARG00000019598 I 0.713
ENSOARG00000013206 Ovis aries ENSOARG00000013206 I 0.867
ENSORLG00000002970 Oryzias latipes ENSORLG00000002970 I 0.711
hlx1 Oryzias latipes ENSORLG00000012055 I 0.867
ENSPPYG00000004431 Pongo abelii ENSPPYG00000004431 I 0.713
ENSPPYG00000000202 Pongo abelii ENSPPYG00000000202 I 0.867
ENSPMAG00000009840 Petromyzon marinus ENSPMAG00000009840 I 0.826
ENSPMAG00000004878 Petromyzon marinus ENSPMAG00000004878 I 0.733
ENSPFOG00000018919 Poecilia formosa ENSPFOG00000018919 I 0.867
ENSPFOG00000014727 Poecilia formosa ENSPFOG00000014727 I 0.733
ENSPFOG00000009708 Poecilia formosa ENSPFOG00000009708 I 0.621
ENSPFOG00000008292 Poecilia formosa ENSPFOG00000008292 I 0.711
ENSPFOG00000004028 Poecilia formosa ENSPFOG00000004028 I 0.733
HLX Procavia capensis ENSPCAG00000012295 I 0.867
DBX2 Procavia capensis ENSPCAG00000006299 I 0.713
ENSPANG00000010481 Papio anubis ENSPANG00000010481 I 0.867
ENSPANG00000005953 Papio anubis ENSPANG00000005953 I 0.713
DBX1 Oryzias latipes ENSORLG00000014512 I 0.733
ENSOARG00000008379 Ovis aries ENSOARG00000008379 I 0.733
ENSOANG00000001435 Ornithorhynchus anatinus ENSOANG00000001435 I 0.828
ENSNLEG00000017924 Nomascus leucogenys ENSNLEG00000017924 I 0.713
ENSLOCG00000016392 Lepisosteus oculatus ENSLOCG00000016392 I 0.867
ENSLOCG00000004886 Lepisosteus oculatus ENSLOCG00000004886 I 0.733
DBX1 Loxodonta africana ENSLAFG00000007378 I 0.733
DBX2 Loxodonta africana ENSLAFG00000005006 I 0.713
HLX Loxodonta africana ENSLAFG00000001289 I 0.867
ENSLACG00000011299 Latimeria chalumnae ENSLACG00000011299 I 0.733
ENSLACG00000008955 Latimeria chalumnae ENSLACG00000008955 I 0.867
ENSLACG00000003968 Latimeria chalumnae ENSLACG00000003968 I 0.711
ENSGMOG00000009056 Gadus morhua ENSGMOG00000009056 I 0.711
ENSGMOG00000003244 Gadus morhua ENSGMOG00000003244 I 0.733
ENSGMOG00000001751 Gadus morhua ENSGMOG00000001751 I 0.867
DBX2 Gorilla gorilla ENSGGOG00000004664 I 0.713
HLX Gorilla gorilla ENSGGOG00000002735 I 0.867
DBX2 Gallus gallus ENSGALG00000009604 I 0.713
ENSLOCG00000016431 Lepisosteus oculatus ENSLOCG00000016431 I 0.713
ENSMEUG00000016510 Macropus eugenii ENSMEUG00000016510 I 0.711
ENSNLEG00000013773 Nomascus leucogenys ENSNLEG00000013773 I 0.867
ENSMPUG00000013914 Mustela putorius furo ENSMPUG00000013914 I 0.733
ENSMPUG00000003954 Mustela putorius furo ENSMPUG00000003954 I 0.867
ENSMPUG00000000372 Mustela putorius furo ENSMPUG00000000372 I 0.713
DBX2 Monodelphis domestica ENSMODG00000018530 I 0.711
DBX1 Monodelphis domestica ENSMODG00000009081 I 0.733
HLX Monodelphis domestica ENSMODG00000004664 I 0.867
ENSMMUG00000022290 Macaca mulatta ENSMMUG00000022290 I 0.713
HLX Myotis lucifugus ENSMLUG00000015571 I 0.867
ENSMLUG00000007038 Myotis lucifugus ENSMLUG00000007038 I 0.713
ENSMICG00000007764 Microcebus murinus ENSMICG00000007764 I 0.713
ENSMICG00000005919 Microcebus murinus ENSMICG00000005919 I 0.867
ENSMGAG00000009614 Meleagris gallopavo ENSMGAG00000009614 I 0.713
ENSMGAG00000002299 Meleagris gallopavo ENSMGAG00000002299 I 0.733
DBX1 Gallus gallus ENSGALG00000003965 I 0.733