hmbox1a (Gasterosteus aculeatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGACG00000014814 T210133_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmbox1
M00419_2.00 		Mus musculus
NNNGWNNN
NNNWCNNN		 PBM
Berger et al.(2008)
Hmbox1_2674 		0.805 0.912
HMBOX1
M03167_2.00 		Homo sapiens
BKTAACTARB
VYTAGTTAMV		 SELEX
Jolma et al.(2013)
HMBOX1_1 		0.805 0.912
HMBOX1
M05180_2.00 		Homo sapiens
BTAACYAGB
VCTRGTTAV		 SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX 		0.805 0.912
HMBOX1
M05181_2.00 		Homo sapiens
NTAACTAGB
VCTAGTTAN		 SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX 		0.805 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000019559 Homeodomain 252 323

Links

Other Homeodomain family TFs
Other Gasterosteus aculeatus TFs

95 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSXMAG00000011675 Xiphophorus maculatus ENSXMAG00000011675 I 0.866
Q4S8E1_TETNG Tetraodon nigroviridis Q4S8E1_TETNG I 0.866
ENSONIG00000003040 Oreochromis niloticus ENSONIG00000003040 I 0.866
hmbox1a Tetraodon nigroviridis ENSTNIG00000011904 I 0.866
ENSPFOG00000017886 Poecilia formosa ENSPFOG00000017886 I 0.866
hmbox1a Takifugu rubripes ENSTRUG00000006366 I 0.866
hmbox1a Oryzias latipes ENSORLG00000014467 I 0.861
hmbox1b Takifugu rubripes ENSTRUG00000004378 I 0.809
hmbox1a Danio rerio ENSDARG00000027082 I 0.809
hmbox1b Gasterosteus aculeatus ENSGACG00000004391 I 0.809
hmbox1b Oryzias latipes ENSORLG00000016242 I 0.809
hmbox1b Danio rerio ENSDARG00000018913 I 0.809
ENSONIG00000001328 Oreochromis niloticus ENSONIG00000001328 I 0.809
ENSPFOG00000000843 Poecilia formosa ENSPFOG00000000843 I 0.809
ENSAMXG00000018539 Astyanax mexicanus ENSAMXG00000018539 I 0.809
ENSXMAG00000001795 Xiphophorus maculatus ENSXMAG00000001795 I 0.809
HMBOX1 Tursiops truncatus ENSTTRG00000015467 I 0.805
ENSP00000401769 Macaca fascicularis ENSP00000401769 I 0.805
HMBOX1 Taeniopygia guttata ENSTGUG00000013324 I 0.805
ENSP00000401769-D1 Bos grunniens ENSP00000401769-D1 I 0.805
HMBOX1 Otolemur garnettii ENSOGAG00000001381 I 0.805
Hmbox1 Mus musculus ENSMUSG00000021972 D 0.805
ENSNLEG00000016701 Nomascus leucogenys ENSNLEG00000016701 I 0.805
ENSOARG00000015036 Ovis aries ENSOARG00000015036 I 0.805
HMBOX1 Oryctolagus cuniculus ENSOCUG00000017211 I 0.805
Cmyd_10005786 Chelonia mydas Cmyd_10005786 I 0.805
Brh_R012838 Buceros rhinoceros Brh_R012838 I 0.805
ENSMPUG00000001070 Mustela putorius furo ENSMPUG00000001070 I 0.805
ENSPPYG00000018480 Pongo abelii ENSPPYG00000018480 I 0.805
Hmbox1 Rattus norvegicus ENSRNOG00000013326 I 0.805
HMBOX1 Pan troglodytes ENSPTRG00000020127 I 0.805
Aan_R010756 Calypte anna Aan_R010756 I 0.805
Afo_R011837 Aptenodytes forsteri Afo_R011837 I 0.805
ENSPANG00000014537 Papio anubis ENSPANG00000014537 I 0.805
HMBOX1 Sus scrofa ENSSSCG00000009682 I 0.805
HMBOX1 Procavia capensis ENSPCAG00000012005 I 0.805
ENSSHAG00000016211 Sarcophilus harrisii ENSSHAG00000016211 I 0.805
ENSPSIG00000016826 Pelodiscus sinensis ENSPSIG00000016826 I 0.805
HMBOX1 Myotis lucifugus ENSMLUG00000007478 I 0.805
hmbox1.S Xenopus laevis XB-GENE-6078482 I 0.805
ENSCSAG00000015894 Chlorocebus sabaeus ENSCSAG00000015894 I 0.805
HMBOX1 Dasypus novemcinctus ENSDNOG00000031840 I 0.805
HMBOX1 Equus caballus ENSECAG00000008240 I 0.805
HMBOX1 Felis catus ENSFCAG00000022672 I 0.805
HMBOX1 Monodelphis domestica ENSMODG00000008788 I 0.805
HMBOX1 Cavia porcellus ENSCPOG00000011124 I 0.805
HMBOX1 Callithrix jacchus ENSCJAG00000015654 I 0.805
ENSAMEG00000016028 Ailuropoda melanoleuca ENSAMEG00000016028 I 0.805
HMBOX1 Anolis carolinensis ENSACAG00000010160 I 0.805
ENSAPLG00000006003 Anas platyrhynchos ENSAPLG00000006003 I 0.805
HMBOX1 Bos taurus ENSBTAG00000010819 I 0.805
HMBOX1 Choloepus hoffmanni ENSCHOG00000005538 I 0.805
HMBOX1 Canis familiaris ENSCAFG00000008237 I 0.805
HMBOX1 Homo sapiens ENSG00000147421 D 0.805
ENSFALG00000010859 Ficedula albicollis ENSFALG00000010859 I 0.805
HMBOX1 Loxodonta africana ENSLAFG00000032318 I 0.805
ENSLOCG00000015994 Lepisosteus oculatus ENSLOCG00000015994 I 0.805
ENSTSYG00000001109 Tarsius syrichta ENSTSYG00000001109 I 0.805
ENSMEUG00000015023 Macropus eugenii ENSMEUG00000015023 I 0.805
Gfo_R008926 Geospiza fortis Gfo_R008926 I 0.805
HMBOX1 Gallus gallus ENSGALG00000016633 I 0.805
HMBOX1 Macaca mulatta ENSMMUG00000014981 I 0.805
Myotis_brandtii_HMBOX1_10012332 Myotis brandtii Myotis_brandtii_HMBOX1_10012332 I 0.805
HMBOX1 Gorilla gorilla ENSGGOG00000000860 I 0.805
ENSGMOG00000006872 Gadus morhua ENSGMOG00000006872 I 0.804
ENSCING00000003920 Ciona intestinalis ENSCING00000003920 I 0.800
ENSCSAVG00000002486 Ciona savignyi ENSCSAVG00000002486 I 0.800
ENSGMOG00000002742 Gadus morhua ENSGMOG00000002742 I 0.792
fgenesh2_pg.scaffold_505000025 Branchiostoma floridae fgenesh2_pg.scaffold_505000025 I 0.770
ENSLOCG00000001916 Lepisosteus oculatus ENSLOCG00000001916 I 0.768
ENSLACG00000011304 Latimeria chalumnae ENSLACG00000011304 I 0.767
ENSAMXG00000011241 Astyanax mexicanus ENSAMXG00000011241 I 0.723
zgc:91944 Danio rerio ENSDARG00000035887 I 0.723
ENSXMAG00000005730 Xiphophorus maculatus ENSXMAG00000005730 I 0.722
ENSONIG00000007704 Oreochromis niloticus ENSONIG00000007704 I 0.722
ENSPFOG00000012263 Poecilia formosa ENSPFOG00000012263 I 0.722
zgc:91944 Oryzias latipes ENSORLG00000020883 I 0.722
zgc:91944 Tetraodon nigroviridis ENSTNIG00000014025 I 0.722
ENSGMOG00000004622 Gadus morhua ENSGMOG00000004622 I 0.722
zgc:91944 Takifugu rubripes ENSTRUG00000012550 I 0.722
zgc:91944 Gasterosteus aculeatus ENSGACG00000009223 I 0.722
SPU_022737 Strongylocentrotus purpuratus SPU_022737 I 0.688
SPU_002791 Strongylocentrotus purpuratus SPU_002791 I 0.688
ENSONIG00000011178 Oreochromis niloticus ENSONIG00000011178 I 0.626
ENSORLG00000018971 Oryzias latipes ENSORLG00000018971 I 0.626
hnf1a Gasterosteus aculeatus ENSGACG00000012691 I 0.626
hnf1a Takifugu rubripes ENSTRUG00000016222 I 0.626
ENSPFOG00000013053 Poecilia formosa ENSPFOG00000013053 I 0.626
hnf1a Tetraodon nigroviridis ENSTNIG00000011468 I 0.626
hnf1a Danio rerio ENSDARG00000009470 I 0.626
ENSXMAG00000003472 Xiphophorus maculatus ENSXMAG00000003472 I 0.626
HMBOX1 Tupaia belangeri ENSTBEG00000016300 I 0.622
CapteG124171 Capitella teleta CapteG124171 I 0.616
HelroG166133 Helobdella robusta HelroG166133 I 0.615
TriadG28952 Trichoplax adhaerens TriadG28952 I 0.601