HNF1A (Gallus gallus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGALG00000006968 T210211_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HNF1A
M03150_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1A_1
0.867 0.982
HNF1A
M09144_2.00
Homo sapiens
DGTTAATKATTAACH

DGTTAATMATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C
0.867 0.982
HNF1A
M10690_2.00
Homo sapiens
RGTTAATDWTTRMHV

BDKYAAWHATTAACY
Transfac
Matys et al.(2006)
V$HNF1_01
0.867 0.982
HNF1A
M10691_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q4
0.867 0.982
HNF1A
M10692_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q5
0.867 0.982
HNF1A
M10693_2.00
Homo sapiens
DGBTAATBAWTHAMYWM

KWRKTDAWTVATTAVCH
Transfac
Matys et al.(2006)
V$HNF1_C
0.867 0.982
Hnf1b
M00408_2.00
Mus musculus
NNHWCNNN

NNNGWDNN
PBM
Berger et al.(2008)
Tcf2_0913
0.866 0.964
HNF1B
M03245_2.00
Homo sapiens
GTTAATNATTAAY

RTTAATNATTAAC
SELEX
Jolma et al.(2013)
HNF1B_1
0.866 0.964
HNF1B
M03246_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1B_2
0.866 0.964
HNF1B
M09168_2.00
Homo sapiens
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A
0.866 0.964
Hnf1b
M09179_2.00
Mus musculus
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A
0.866 0.964
HNF1B
M10758_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6_01
0.866 0.964
HNF1B
M10759_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6
0.866 0.964
HNF1B
M10760_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LFA1_Q6
0.866 0.964
Hnf1a
M00171_2.00
Mus musculus
HTAAYYNN

NNRRTTAD
PBM
Badis et al.(2009)
Tcf1_2666
0.860 0.964
Hnf1a
M00444_2.00
Mus musculus
HTAAYYNNN

NNNRRTTAD
PBM
Berger et al.(2008)
Tcf1_2666
0.860 0.964
Hnf1a
M09191_2.00
Mus musculus
RGTTAATNWTTDMHN

NDKHAAWNATTAACY
Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A
0.860 0.964
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN

NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.638 0.382
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB

VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.638 0.382
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB

VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.638 0.382
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB

VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.638 0.382
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000037563 Homeodomain 203 278

Links

Other Homeodomain family TFs
Other Gallus gallus TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAB34088 Xenopus laevis AAB34088 I 0.000
AAK54135 Xenopus tropicalis AAK54135 I 0.000
AAK54137 Xenopus laevis AAK54137 I 0.000
AAK54139 Xenopus laevis AAK54139 I 0.000
Aan_R012932 Calypte anna Aan_R012932 I 0.000
Afo_R005870 Aptenodytes forsteri Afo_R005870 I 0.000
Alligator_sinensis_CCG016283.1 Alligator sinensis Alligator_sinensis_CCG016283.1 I 0.000
Brh_R006038 Buceros rhinoceros Brh_R006038 I 0.000
CapteG76255 Capitella teleta CapteG76255 I 0.000
Cmyd_10017446 Chelonia mydas Cmyd_10017446 I 0.000
SNAI2 Anolis carolinensis ENSACAG00000012332 I 0.000
ENSAMEG00000009606 Ailuropoda melanoleuca ENSAMEG00000009606 I 0.000
ENSAMXG00000011013 Astyanax mexicanus ENSAMXG00000011013 I 0.000
ENSAPLG00000003920 Anas platyrhynchos ENSAPLG00000003920 I 0.000
SNAI2 Canis familiaris ENSCAFG00000006638 I 0.000
SNAI2 Choloepus hoffmanni ENSCHOG00000007046 I 0.000
SNAI2 Callithrix jacchus ENSCJAG00000013499 I 0.000
ENSCPOG00000014827 Cavia porcellus ENSCPOG00000014827 I 0.000
ENSCSAG00000014787 Chlorocebus sabaeus ENSCSAG00000014787 I 0.000
snai2 Danio rerio ENSDARG00000040046 I 0.000
SNAI2 Dasypus novemcinctus ENSDNOG00000035997 I 0.000
SNAI2 Equus caballus ENSECAG00000010120 I 0.000
ENSFALG00000005762 Ficedula albicollis ENSFALG00000005762 I 0.000
SNAI2 Felis catus ENSFCAG00000015779 I 0.000
SNAI2 Homo sapiens ENSG00000019549 D 0.000
snai2 Gasterosteus aculeatus ENSGACG00000017935 I 0.000
ENSGALG00000015241 Gallus gallus ENSGALG00000015241 I 0.000
SNAI2 Gorilla gorilla ENSGGOG00000000959 I 0.000
ENSGMOG00000002669 Gadus morhua ENSGMOG00000002669 I 0.000
ENSLACG00000004705 Latimeria chalumnae ENSLACG00000004705 I 0.000
ENSLACG00000005413 Latimeria chalumnae ENSLACG00000005413 I 0.000
ENSLACG00000017707 Latimeria chalumnae ENSLACG00000017707 I 0.000
SNAI2 Loxodonta africana ENSLAFG00000009299 I 0.000
ENSLOCG00000004887 Lepisosteus oculatus ENSLOCG00000004887 I 0.000
ENSLOCG00000005992 Lepisosteus oculatus ENSLOCG00000005992 I 0.000
ENSMEUG00000009510 Macropus eugenii ENSMEUG00000009510 I 0.000
SNAI2 Meleagris gallopavo ENSMGAG00000010813 I 0.000
SNAI2 Microcebus murinus ENSMICG00000000335 I 0.000
SNAI2 Myotis lucifugus ENSMLUG00000001086 I 0.000
SNAI2 Macaca mulatta ENSMMUG00000016195 I 0.000
SNAI2 Monodelphis domestica ENSMODG00000010173 I 0.000
ENSMPUG00000010793 Mustela putorius furo ENSMPUG00000010793 I 0.000
Snai2 Mus musculus ENSMUSG00000022676 D 0.000
ENSNLEG00000013421 Nomascus leucogenys ENSNLEG00000013421 I 0.000
SNAI2 Ornithorhynchus anatinus ENSOANG00000007267 I 0.000
ENSOARG00000013030 Ovis aries ENSOARG00000013030 I 0.000
SNAI2 Oryctolagus cuniculus ENSOCUG00000012254 I 0.000
SNAI2 Otolemur garnettii ENSOGAG00000010500 I 0.000
ENSONIG00000009542 Oreochromis niloticus ENSONIG00000009542 I 0.000
snai2 Oryzias latipes ENSORLG00000017475 I 0.000
ENSP00000020945-D1 Bos grunniens ENSP00000020945-D1 I 0.000
ENSP00000380034 Macaca fascicularis ENSP00000380034 I 0.000
ENSPANG00000017540 Papio anubis ENSPANG00000017540 I 0.000
SNAI2 Procavia capensis ENSPCAG00000001788 I 0.000
ENSPFOG00000014336 Poecilia formosa ENSPFOG00000014336 I 0.000
ENSPPYG00000018578 Pongo abelii ENSPPYG00000018578 I 0.000
ENSPSIG00000003607 Pelodiscus sinensis ENSPSIG00000003607 I 0.000
ENSPSIG00000016395 Pelodiscus sinensis ENSPSIG00000016395 I 0.000
SNAI2 Pan troglodytes ENSPTRG00000020235 I 0.000
SNAI2 Pteropus vampyrus ENSPVAG00000009457 I 0.000
Snai2 Rattus norvegicus ENSRNOG00000047699 I 0.000
ENSSHAG00000004205 Sarcophilus harrisii ENSSHAG00000004205 I 0.000
ENSSSCG00000024404 Sus scrofa ENSSSCG00000024404 I 0.000
ENSSSCG00000026570 Sus scrofa ENSSSCG00000026570 I 0.000
ENSSTOG00000028743 Ictidomys tridecemlineatus ENSSTOG00000028743 I 0.000
SNAI2 Taeniopygia guttata ENSTGUG00000010914 I 0.000
snai2 Tetraodon nigroviridis ENSTNIG00000008504 I 0.000
snai2 Takifugu rubripes ENSTRUG00000006860 I 0.000
ENSXMAG00000019030 Xiphophorus maculatus ENSXMAG00000019030 I 0.000
esg Drosophila melanogaster FBgn0001981 D 0.000
GA17666 Drosophila pseudoobscura FBgn0077676 I 0.000
GF15382 Drosophila ananassae FBgn0092407 I 0.000
GG25158 Drosophila erecta FBgn0117283 I 0.000
GH13754 Drosophila grimshawi FBgn0121230 I 0.000
GI17894 Drosophila mojavensis FBgn0140635 I 0.000
GL26425 Drosophila persimilis FBgn0164007 I 0.000
GD24004 Drosophila simulans FBgn0195364 I 0.000
GJ17399 Drosophila virilis FBgn0204571 I 0.000
GK18133 Drosophila willistoni FBgn0220132 I 0.000
GE20968 Drosophila yakuba FBgn0238253 I 0.000
Gfo_R012649 Geospiza fortis Gfo_R012649 I 0.000
HMEL002306 Heliconius melpomene HMEL002306 I 0.000
KGM_17970 Danaus plexippus KGM_17970 I 0.000
LCUP013268 Lucilia cuprina LCUP013268 I 0.000
LDEC001157 Leptinotarsa decemlineata LDEC001157 I 0.000
LotgiG114290 Lottia gigantea LotgiG114290 I 0.000
MCINX001355 Melitaea cinxia MCINX001355 I 0.000
MDOA014024 Musca domestica MDOA014024 I 0.000
Myotis_brandtii_Snai2_10018131 Myotis brandtii Myotis_brandtii_Snai2_10018131 I 0.000
Ogr04681 Ophisaurus gracilis Ogr04681 I 0.000
PPAI008011 Phlebotomus papatasi PPAI008011 I 0.000
Pvit_15376 Pogona vitticeps Pvit_15376 I 0.000
Sakowv30043351m.g Saccoglossus kowalevskii Sakowv30043351m.g I 0.000
Tal_R003673 Tyto alba Tal_R003673 I 0.000
TC014474 Tribolium castaneum TC014474 I 0.000
snai1 Xenopus tropicalis XB-GENE-479970 I 0.000
snai2 Xenopus tropicalis XB-GENE-487371 I 0.000
snai2.L Xenopus laevis XB-GENE-6255814 I 0.000
snai1.S Xenopus laevis XB-GENE-865328 I 0.000
snai2.S Xenopus laevis XB-GENE-865699 I 0.000