HNF1A (Gallus gallus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGALG00000006968 T210211_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HNF1A
M03150_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1A_1
0.867 0.982
HNF1A
M09144_2.00
Homo sapiens
DGTTAATKATTAACH

DGTTAATMATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C
0.867 0.982
HNF1A
M10690_2.00
Homo sapiens
RGTTAATDWTTRMHV

BDKYAAWHATTAACY
Transfac
Matys et al.(2006)
V$HNF1_01
0.867 0.982
HNF1A
M10691_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q4
0.867 0.982
HNF1A
M10692_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q5
0.867 0.982
HNF1A
M10693_2.00
Homo sapiens
DGBTAATBAWTHAMYWM

KWRKTDAWTVATTAVCH
Transfac
Matys et al.(2006)
V$HNF1_C
0.867 0.982
Hnf1b
M00408_2.00
Mus musculus
NNHWCNNN

NNNGWDNN
PBM
Berger et al.(2008)
Tcf2_0913
0.866 0.964
HNF1B
M03245_2.00
Homo sapiens
GTTAATNATTAAY

RTTAATNATTAAC
SELEX
Jolma et al.(2013)
HNF1B_1
0.866 0.964
HNF1B
M03246_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1B_2
0.866 0.964
HNF1B
M09168_2.00
Homo sapiens
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A
0.866 0.964
Hnf1b
M09179_2.00
Mus musculus
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A
0.866 0.964
HNF1B
M10758_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6_01
0.866 0.964
HNF1B
M10759_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6
0.866 0.964
HNF1B
M10760_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LFA1_Q6
0.866 0.964
Hnf1a
M00171_2.00
Mus musculus
HTAAYYNN

NNRRTTAD
PBM
Badis et al.(2009)
Tcf1_2666
0.860 0.964
Hnf1a
M00444_2.00
Mus musculus
HTAAYYNNN

NNNRRTTAD
PBM
Berger et al.(2008)
Tcf1_2666
0.860 0.964
Hnf1a
M09191_2.00
Mus musculus
RGTTAATNWTTDMHN

NDKHAAWNATTAACY
Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A
0.860 0.964
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN

NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.638 0.382
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB

VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.638 0.382
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB

VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.638 0.382
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB

VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.638 0.382
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000037563 Homeodomain 203 278

Links

Other Homeodomain family TFs
Other Gallus gallus TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL000041 Aedes aegypti AAEL000041 I 0.000
AAEL015632 Aedes aegypti AAEL015632 I 0.000
AALB009484 Anopheles albimanus AALB009484 I 0.000
Aan_R012851 Calypte anna Aan_R012851 I 0.000
AARA004720 Anopheles arabiensis AARA004720 I 0.000
AATE008326 Anopheles atroparvus AATE008326 I 0.000
ACOM037496 Anopheles coluzzii ACOM037496 I 0.000
ACUA019142 Anopheles culicifacies ACUA019142 I 0.000
ACYPI55143 Acyrthosiphon pisum ACYPI55143 I 0.000
ADIR002760 Anopheles dirus ADIR002760 I 0.000
AEPI002386 Anopheles epiroticus AEPI002386 I 0.000
AFAF012594 Anopheles farauti AFAF012594 I 0.000
Afo_R006429 Aptenodytes forsteri Afo_R006429 I 0.000
AFUN009863 Anopheles funestus AFUN009863 I 0.000
AGAP002903 Anopheles gambiae AGAP002903 I 0.000
Alligator_sinensis_CCG012275.1 Alligator sinensis Alligator_sinensis_CCG012275.1 I 0.000
AMEC017755 Anopheles melas AMEC017755 I 0.000
AMEM004834 Anopheles merus AMEM004834 I 0.000
AMIN000724 Anopheles minimus AMIN000724 I 0.000
AQUA009304 Anopheles quadriannulatus AQUA009304 I 0.000
ASTEI00078 Anopheles stephensi ASTEI00078 I 0.000
A_01406 Schistosoma haematobium A_01406 I 0.000
BGLB014205 Biomphalaria glabrata BGLB014205 I 0.000
CapteG222987 Capitella teleta CapteG222987 I 0.000
CG32006 Drosophila melanogaster FBgn0052006 N 0.000
CLEC000256 Cimex lectularius CLEC000256 I 0.000
Cmyd_10016658 Chelonia mydas Cmyd_10016658 I 0.000
CPIJ016958 Culex quinquefasciatus CPIJ016958 I 0.000
CpipJ_CPIJ016958 Culex pipiens CpipJ_CPIJ016958 I 0.000
csin105476 Clonorchis sinensis csin105476 I 0.000
DAPPUDRAFT_8603 Daphnia pulex DAPPUDRAFT_8603 I 0.000
DILT_0000300801 Diphyllobothrium latum DILT_0000300801 I 0.000
ECANG7_05018 Echinococcus canadensis ECANG7_05018 I 0.000
EmuJ_000660100 Echinococcus multilocularis EmuJ_000660100 I 0.000
ENSACAG00000004870 Anolis carolinensis ENSACAG00000004870 I 0.000
ENSAMEG00000010217 Ailuropoda melanoleuca ENSAMEG00000010217 I 0.000
ENSAMXG00000006564 Astyanax mexicanus ENSAMXG00000006564 I 0.000
ENSAPLG00000003960 Anas platyrhynchos ENSAPLG00000003960 I 0.000
ENSCPOG00000010965 Cavia porcellus ENSCPOG00000010965 I 0.000
ENSCSAG00000004998 Chlorocebus sabaeus ENSCSAG00000004998 I 0.000
ENSFALG00000000971 Ficedula albicollis ENSFALG00000000971 I 0.000
ENSGMOG00000015882 Gadus morhua ENSGMOG00000015882 I 0.000
ENSLACG00000016329 Latimeria chalumnae ENSLACG00000016329 I 0.000
ENSLACG00000016929 Latimeria chalumnae ENSLACG00000016929 I 0.000
ENSLOCG00000011207 Lepisosteus oculatus ENSLOCG00000011207 I 0.000
ENSMEUG00000007843 Macropus eugenii ENSMEUG00000007843 I 0.000
ENSMICG00000013240 Microcebus murinus ENSMICG00000013240 I 0.000
ENSMPUG00000013521 Mustela putorius furo ENSMPUG00000013521 I 0.000
ENSOARG00000007895 Ovis aries ENSOARG00000007895 I 0.000
ENSONIG00000009418 Oreochromis niloticus ENSONIG00000009418 I 0.000
ENSONIG00000019769 Oreochromis niloticus ENSONIG00000019769 I 0.000
ENSP00000323880-D1 Bos grunniens ENSP00000323880-D1 I 0.000
ENSPANG00000020054 Papio anubis ENSPANG00000020054 I 0.000
ENSPFOG00000004597 Poecilia formosa ENSPFOG00000004597 I 0.000
ENSPFOG00000019618 Poecilia formosa ENSPFOG00000019618 I 0.000
ENSPMAG00000005958 Petromyzon marinus ENSPMAG00000005958 I 0.000
ENSPMAG00000006623 Petromyzon marinus ENSPMAG00000006623 I 0.000
ENSPPYG00000008652 Pongo abelii ENSPPYG00000008652 I 0.000
ENSPSIG00000002424 Pelodiscus sinensis ENSPSIG00000002424 I 0.000
ENSSHAG00000017120 Sarcophilus harrisii ENSSHAG00000017120 I 0.000
ENSSTOG00000021584 Ictidomys tridecemlineatus ENSSTOG00000021584 I 0.000
estExt_fgenesh2_pg.C_170078 Branchiostoma floridae estExt_fgenesh2_pg.C_170078 I 0.000
foxj1 Xenopus tropicalis XB-GENE-853648 I 0.000
FOXJ1 Tursiops truncatus ENSTTRG00000015916 I 0.000
FOXJ1 Ornithorhynchus anatinus ENSOANG00000014384 I 0.000
FOXJ1 Bos taurus ENSBTAG00000007916 I 0.000
FOXJ1 Homo sapiens ENSG00000129654 D 0.000
FOXJ1 Monodelphis domestica ENSMODG00000008306 I 0.000
FOXJ1 Taeniopygia guttata ENSTGUG00000008019 I 0.000
FOXJ1 Sus scrofa ENSSSCG00000017187 I 0.000
FOXJ1 Pan troglodytes ENSPTRG00000009674 I 0.000
FOXJ1 Procavia capensis ENSPCAG00000015387 I 0.000
FOXJ1 Gorilla gorilla ENSGGOG00000007282 I 0.000
FOXJ1 Loxodonta africana ENSLAFG00000032043 I 0.000
FOXJ1 Meleagris gallopavo ENSMGAG00000004252 I 0.000
FOXJ1 Ochotona princeps ENSOPRG00000011410 I 0.000
FOXJ1 Myotis lucifugus ENSMLUG00000006595 I 0.000
FOXJ1 Macaca mulatta ENSMMUG00000003533 I 0.000
FOXJ1 Oryctolagus cuniculus ENSOCUG00000011472 I 0.000
FOXJ1 Felis catus ENSFCAG00000005772 I 0.000
FOXJ1 Equus caballus ENSECAG00000014390 I 0.000
FOXJ1 Canis familiaris ENSCAFG00000005050 I 0.000
Foxj1 Mus musculus ENSMUSG00000034227 D 0.000
FOXJ1 Anolis carolinensis ENSACAG00000008123 I 0.000
FOXJ1 Otolemur garnettii ENSOGAG00000026625 I 0.000
FOXJ1 Callithrix jacchus ENSCJAG00000013682 I 0.000
FOXJ1 Dasypus novemcinctus ENSDNOG00000036643 I 0.000
foxj1.2 Xenopus tropicalis XB-GENE-919738 I 0.000
foxj1.2.L Xenopus laevis XB-GENE-919747 I 0.000
foxj1.L Xenopus laevis XB-GENE-856300 I 0.000
foxj1.S Xenopus laevis XB-GENE-6254646 I 0.000
foxj1a Takifugu rubripes ENSTRUG00000001697 I 0.000
foxj1a Danio rerio ENSDARG00000101919 I 0.000
foxj1a Gasterosteus aculeatus ENSGACG00000014879 I 0.000
foxj1a Tetraodon nigroviridis ENSTNIG00000011308 I 0.000
foxj1b Gasterosteus aculeatus ENSGACG00000004462 I 0.000
foxj1b Tetraodon nigroviridis ENSTNIG00000012916 I 0.000
foxj1b Danio rerio ENSDARG00000088290 I 0.000
foxj1b Takifugu rubripes ENSTRUG00000016940 I 0.000
GE14537 Drosophila yakuba FBgn0232137 N 0.000
GF22834 Drosophila ananassae FBgn0099828 N 0.000
Gfo_R007395 Geospiza fortis Gfo_R007395 I 0.000
GG16378 Drosophila erecta FBgn0108610 N 0.000
GI14030 Drosophila mojavensis FBgn0136784 N 0.000
GJ19567 Drosophila virilis FBgn0206709 N 0.000
GK13616 Drosophila willistoni FBgn0215624 N 0.000
GM23241 Drosophila sechellia FBgn0178108 N 0.000
HDID_0000845501 Hymenolepis diminuta HDID_0000845501 I 0.000
HmN_000875600 Hymenolepis microstoma HmN_000875600 I 0.000
HNAJ_0000187001 Hymenolepis nana HNAJ_0000187001 I 0.000
ISCW018243 Ixodes scapularis ISCW018243 I 0.000
L798_14003 Zootermopsis nevadensis L798_14003 I 0.000
LCUP016770 Lucilia cuprina LCUP016770 N 0.000
LotgiG69660 Lottia gigantea LotgiG69660 I 0.000
NEMVEDRAFT_v1g65438 Nematostella vectensis NEMVEDRAFT_v1g65438 I 0.000
Ocbimv22006019m.g Octopus bimaculoides Ocbimv22006019m.g I 0.000
Ogr05152 Ophisaurus gracilis Ogr05152 I 0.000
Ogr16080 Ophisaurus gracilis Ogr16080 I 0.000
PHUM083480 Pediculus humanus PHUM083480 I 0.000
Pvit_10306 Pogona vitticeps Pvit_10306 I 0.000
Sakowv30028437m.g Saccoglossus kowalevskii Sakowv30028437m.g I 0.000
SMAR007498 Strigamia maritima SMAR007498 I 0.000
SPU_027969 Strongylocentrotus purpuratus SPU_027969 I 0.000
T265_06415 Opisthorchis viverrini T265_06415 I 0.000
Tal_R007079 Tyto alba Tal_R007079 I 0.000
TASK_0000605401 Taenia asiatica TASK_0000605401 I 0.000
TC005573 Tribolium castaneum TC005573 I 0.000
TriadG17444 Trichoplax adhaerens TriadG17444 I 0.000
TsM_000185900 Taenia solium TsM_000185900 I 0.000
TTAC_0000110701 Hydatigera taeniaeformis TTAC_0000110701 I 0.000
YQE_06872 Dendroctonus ponderosae YQE_06872 I 0.000