SIX4 (Gallus gallus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGALG00000017389 T210264_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Six4
M00461_2.00
Mus musculus
NNKABMHNN

NNDKVTMNN
PBM
Berger et al.(2008)
Six4_2860
0.867 0.981
SIX4
M04939_2.00
Homo sapiens
NVYGATACVB

VBGTATCRBN
SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX
0.867 0.981
Six4
M09198_2.00
Mus musculus
DGDAABHNSASNNN

NNNSTSNDVTTHCH
Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C
0.867 0.981
SIX4
M10646_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX4_Q3
0.867 0.981
SIX4
M04940_2.00
Homo sapiens
NBGTAWCRHN

NDYGWTACVN
SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX
0.867 0.981
Six4
M00563_2.00
Drosophila melanogaster
NNDANMHNN

NNDKNTHNN
PBM
Busser et al.(2012a)
Six4
0.827 0.792
Six4
M06530_2.00
Drosophila melanogaster
TGABAC

GTVTCA
B1H
Mathelier et al.(2014)
MA0204.1
0.827 0.792
Six4
M06334_2.00
Drosophila melanogaster
WDDTGABAC

GTVTCAHHW
B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364
0.827 0.792
Six4
M06335_2.00
Drosophila melanogaster
NTGAKACB

VGTMTCAN
B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364
0.827 0.792
Six4
M06336_2.00
Drosophila melanogaster
NNNTGABA

TVTCANNN
B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364
0.827 0.792
SIX5
M08208_2.00
Homo sapiens
GARWTGTAGT

ACTACAWYTC
ChIP-seq
Contrino et al.(2012)
Mv121
0.826 0.774
SIX5
M08209_2.00
Homo sapiens
GGAGTTGT

ACAACTCC
ChIP-seq
Contrino et al.(2012)
Mv123
0.826 0.774
SIX5
M10738_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_01
0.826 0.774
SIX5
M10739_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_02
0.826 0.774
Six2
M00425_2.00
Mus musculus
NNAYMYNN

NNRKRTNN
PBM
Berger et al.(2008)
Six2_2307
0.708 0.736
Six1
M00512_2.00
Mus musculus
NNDATMYNNN

NNNRKATHNN
PBM
Berger et al.(2008)
Six1_0935
0.708 0.736
SIX1
M05094_2.00
Homo sapiens
NNYGATACVB

VBGTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX
0.708 0.736
SIX1
M05096_2.00
Homo sapiens
NNYGATAYVB

VBRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX
0.708 0.736
SIX2
M05285_2.00
Homo sapiens
NNYGATACSB

VSGTATCRNN
SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX
0.708 0.736
SIX2
M05287_2.00
Homo sapiens
NSGTRWCRYN

NRYGWYACSN
SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX
0.708 0.736
SIX1
M08130_2.00
Homo sapiens
GWAACCTGANM

KNTCAGGTTWC
ChIP-seq
Mathelier et al.(2014)
MA1118.1
0.708 0.736
SIX2
M08133_2.00
Homo sapiens
NNNTGWAACCTGAKMH

DKMTCAGGTTWCANNN
ChIP-seq
Mathelier et al.(2014)
MA1119.1
0.708 0.736
SIX1
M09142_2.00
Homo sapiens
DGWAAYHTGABMYN

NRKVTCADRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A
0.708 0.736
SIX2
M09157_2.00
Homo sapiens
DGWAAYHHGABMH

DKVTCDDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A
0.708 0.736
Six2
M09185_2.00
Mus musculus
DGWAAYHYRABMYB

VRKVTYRDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A
0.708 0.736
Six1
M09579_2.00
Mus musculus
GWAAYHTGABMH

DKVTCADRTTWC
Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150
0.708 0.736
SIX1
M10684_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3_01
0.708 0.736
SIX1
M10685_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3
0.708 0.736
SIX1
M05095_2.00
Homo sapiens
NNYGATABNB

VNVTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX
0.708 0.736
SIX1
M05097_2.00
Homo sapiens
NNYGATAYSB

VSRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX
0.708 0.736
SIX2
M05286_2.00
Homo sapiens
NBRTATCRNN

NNYGATAYVN
SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX
0.708 0.736
SIX2
M05288_2.00
Homo sapiens
VBRTAWCRNN

NNYGWTAYVB
SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX
0.708 0.736
so
M02117_2.00
Drosophila melanogaster
NDATMYNNN

NNNRKATHN
PBM
Weirauch et al.(2014)
pTH5690
0.708 0.717
so
M03800_2.00
Drosophila melanogaster
NYGATAYB

VRTATCRN
SELEX
Nitta et al.(2015)
so_1
0.708 0.717
so
M03801_2.00
Drosophila melanogaster
YKATAYNNNYGATAY

RTATCRNNNRTATMR
SELEX
Nitta et al.(2015)
so_2
0.708 0.717
so
M03802_2.00
Drosophila melanogaster
YGATACGTATCR

YGATACGTATCR
SELEX
Nitta et al.(2015)
so_3
0.708 0.717
so
M03803_2.00
Drosophila melanogaster
RTATCRYGATAC

GTATCRYGATAY
SELEX
Nitta et al.(2015)
so_4
0.708 0.717
so
M06497_2.00
Drosophila melanogaster
TGATAC

GTATCA
B1H
Mathelier et al.(2014)
MA0246.1
0.708 0.717
so
M06268_2.00
Drosophila melanogaster
NRTGATA

TATCAYN
B1H
Zhu et al.(2011)
So_Cell_FBgn0003460
0.708 0.717
so
M06269_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460
0.708 0.717
ceh-34
M00672_2.00
Caenorhabditis elegans
NNNRDAWNNN

NNNWTHYNNN
PBM
Narasimhan et al.(2015)
pTH9708
0.634 0.604
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000028023 Homeodomain 173 225

Links

Other Homeodomain family TFs
Other Gallus gallus TFs

542 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29417.m000034 Ricinus communis 29417.m000034 N 0.000
30090.m000247 Ricinus communis 30090.m000247 N 0.000
AMTR_s00032p00241350 Amborella trichopoda AMTR_s00032p00241350 N 0.000
AMTR_s00033p00166000 Amborella trichopoda AMTR_s00033p00166000 N 0.000
AMTR_s00059p00116150 Amborella trichopoda AMTR_s00059p00116150 N 0.000
Aquca_016_00081 Aquilegia coerulea Aquca_016_00081 N 0.000
AT2G12646 Arabidopsis thaliana AT2G12646 N 0.000
BGIOSGA007009 Oryza indica BGIOSGA007009 N 0.000
BGIOSGA007635 Oryza indica BGIOSGA007635 N 0.000
BGIOSGA023427 Oryza indica BGIOSGA023427 N 0.000
Bo3g087070 Brassica oleracea Bo3g087070 N 0.000
Bo9g022400 Brassica oleracea Bo9g022400 N 0.000
Bostr.22685s0001 Boechera stricta Bostr.22685s0001 N 0.000
Bra013149 Brassica rapa Bra013149 N 0.000
Bra037203 Brassica rapa Bra037203 N 0.000
BRADI1G32050 Brachypodium distachyon BRADI1G32050 N 0.000
BRADI3G05380 Brachypodium distachyon BRADI3G05380 N 0.000
BRADI3G06190 Brachypodium distachyon BRADI3G06190 N 0.000
Cagra.2506s0001 Capsella grandiflora Cagra.2506s0001 N 0.000
Carubv10015124m.g Capsella rubella Carubv10015124m.g N 0.000
cassava11490.m1 Manihot esculenta cassava11490.m1 N 0.000
cassava14439.m1 Manihot esculenta cassava14439.m1 N 0.000
cassava41034.m1 Manihot esculenta cassava41034.m1 N 0.000
cassava446.valid.m1 Manihot esculenta cassava446.valid.m1 N 0.000
Ca_06740 Cicer arietinum Ca_06740 N 0.000
chr6.CM0037.1230.nd Lotus japonicus chr6.CM0037.1230.nd N 0.000
Ciclev10010747m.g Citrus clementina Ciclev10010747m.g N 0.000
Cucsa.132770 Cucumis sativus Cucsa.132770 N 0.000
Eucgr.C00450 Eucalyptus grandis Eucgr.C00450 N 0.000
Eucgr.D00032 Eucalyptus grandis Eucgr.D00032 N 0.000
evm.TU.supercontig_46.74 Carica papaya evm.TU.supercontig_46.74 N 0.000
fgenesh2_kg.3__2996__AT2G12646.1 Arabidopsis lyrata fgenesh2_kg.3__2996__AT2G12646.1 N 0.000
gene30812-v1.0-hybrid Fragaria vesca gene30812-v1.0-hybrid N 0.000
GLYMA01G17580 Glycine max GLYMA01G17580 N 0.000
GLYMA09G05781 Glycine max GLYMA09G05781 N 0.000
GLYMA09G12330 Glycine max GLYMA09G12330 N 0.000
GLYMA11G17770 Glycine max GLYMA11G17770 N 0.000
GLYMA13G23360 Glycine max GLYMA13G23360 N 0.000
GLYMA15G23920 Glycine max GLYMA15G23920 N 0.000
GLYMA17G11470 Glycine max GLYMA17G11470 N 0.000
Gorai.004G110400 Gossypium raimondii Gorai.004G110400 N 0.000
Gorai.009G013500 Gossypium raimondii Gorai.009G013500 N 0.000
Gorai.010G057300 Gossypium raimondii Gorai.010G057300 N 0.000
GRMZM2G017882 Zea mays GRMZM2G017882 N 0.000
GRMZM2G070295 Zea mays GRMZM2G070295 N 0.000
GSMUA_Achr11G04210_001 Musa acuminata GSMUA_Achr11G04210_001 N 0.000
GSMUA_Achr1G09990_001 Musa acuminata GSMUA_Achr1G09990_001 N 0.000
GSMUA_Achr2G02580_001 Musa acuminata GSMUA_Achr2G02580_001 N 0.000
GSMUA_Achr6G20140_001 Musa acuminata GSMUA_Achr6G20140_001 N 0.000
GSMUA_Achr6G30690_001 Musa acuminata GSMUA_Achr6G30690_001 N 0.000
GSMUA_Achr6G35220_001 Musa acuminata GSMUA_Achr6G35220_001 N 0.000
GSMUA_Achr7G03600_001 Musa acuminata GSMUA_Achr7G03600_001 N 0.000
GSMUA_Achr8G33510_001 Musa acuminata GSMUA_Achr8G33510_001 N 0.000
GSMUA_Achr9G22490_001 Musa acuminata GSMUA_Achr9G22490_001 N 0.000
GSMUA_Achr9G30790_001 Musa acuminata GSMUA_Achr9G30790_001 N 0.000
GSMUA_AchrUn_randomG23740_001 Musa acuminata GSMUA_AchrUn_randomG23740_001 N 0.000
LPERR02G04770 Leersia perrieri LPERR02G04770 N 0.000
LPERR02G05550 Leersia perrieri LPERR02G05550 N 0.000
LPERR06G19930 Leersia perrieri LPERR06G19930 N 0.000
Lus10008031.g Linum usitatissimum Lus10008031.g N 0.000
Lus10008814.g Linum usitatissimum Lus10008814.g N 0.000
Lus10038103.g Linum usitatissimum Lus10038103.g N 0.000
Lus10039989.g Linum usitatissimum Lus10039989.g N 0.000
MDP0000639526 Malus domestica MDP0000639526 N 0.000
mgf020898m Mimulus guttatus mgf020898m N 0.000
MLOC_21744 Hordeum vulgare MLOC_21744 N 0.000
MLOC_37403 Hordeum vulgare MLOC_37403 N 0.000
MTR_4g116300 Medicago truncatula MTR_4g116300 N 0.000
OB02G14750 Oryza brachyantha OB02G14750 N 0.000
OB02G15630 Oryza brachyantha OB02G15630 N 0.000
OBART02G05520 Oryza barthii OBART02G05520 N 0.000
OBART06G24000 Oryza barthii OBART06G24000 N 0.000
OGLUM02G05380 Oryza glumaepatula OGLUM02G05380 N 0.000
OGLUM06G25260 Oryza glumaepatula OGLUM06G25260 N 0.000
OLONG_011712 Oryza longistaminata OLONG_011712 N 0.000
OMERI06G23930 Oryza meridionalis OMERI06G23930 N 0.000
ONIVA02G05860 Oryza nivara ONIVA02G05860 N 0.000
ONIVA03G43780 Oryza nivara ONIVA03G43780 N 0.000
OPUNC02G04680 Oryza punctata OPUNC02G04680 N 0.000
OPUNC02G05490 Oryza punctata OPUNC02G05490 N 0.000
OPUNC06G21750 Oryza punctata OPUNC06G21750 N 0.000
orange1.1g042361m.g Citrus sinensis orange1.1g042361m.g N 0.000
ORGLA02G0058300 Oryza glaberrima ORGLA02G0058300 N 0.000
ORGLA06G0201700 Oryza glaberrima ORGLA06G0201700 N 0.000
ORUFI02G05620 Oryza rufipogon ORUFI02G05620 N 0.000
OS02G0172800 Oryza sativa OS02G0172800 N 0.000
OS02G0183000 Oryza sativa OS02G0183000 N 0.000
OS06G0666100 Oryza sativa OS06G0666100 N 0.000
Pavir.Aa03378 Panicum virgatum Pavir.Aa03378 N 0.000
Pavir.Ab00578 Panicum virgatum Pavir.Ab00578 N 0.000
Pavir.Ab00641 Panicum virgatum Pavir.Ab00641 N 0.000
Pavir.Da00255 Panicum virgatum Pavir.Da00255 N 0.000
Pavir.Db00476 Panicum virgatum Pavir.Db00476 N 0.000
Pavir.J35161 Panicum virgatum Pavir.J35161 N 0.000
PDK_20s1316692g001 Phoenix dactylifera PDK_20s1316692g001 N 0.000
PDK_20s1397531g003 Phoenix dactylifera PDK_20s1397531g003 N 0.000
PDK_20s1530701g001 Phoenix dactylifera PDK_20s1530701g001 N 0.000
PGSC0003DMG400007885 Solanum tuberosum PGSC0003DMG400007885 N 0.000
Pm017841 Prunus mume Pm017841 N 0.000
Pm027672 Prunus mume Pm027672 N 0.000
POPTR_0003s07310 Populus trichocarpa POPTR_0003s07310 N 0.000
POPTR_0006s05950 Populus trichocarpa POPTR_0006s05950 N 0.000
POPTR_0018s12380 Populus trichocarpa POPTR_0018s12380 N 0.000
PRUPE_ppa019806mg Prunus persica PRUPE_ppa019806mg N 0.000
PRUPE_ppa023785mg Prunus persica PRUPE_ppa023785mg N 0.000
SapurV1A.0210s0200 Salix purpurea SapurV1A.0210s0200 N 0.000
SapurV1A.0306s0210 Salix purpurea SapurV1A.0306s0210 N 0.000
SapurV1A.2696s0020 Salix purpurea SapurV1A.2696s0020 N 0.000
Sb04g004830 Sorghum bicolor Sb04g004830 N 0.000
Sb04g005680 Sorghum bicolor Sb04g005680 N 0.000
Sb10g026620 Sorghum bicolor Sb10g026620 N 0.000
scaffold_303520.1 Arabidopsis lyrata scaffold_303520.1 N 0.000
Si018139m.g Setaria italica Si018139m.g N 0.000
Si019544m.g Setaria italica Si019544m.g N 0.000
Solyc07g007320.1 Solanum lycopersicum Solyc07g007320.1 N 0.000
Solyc12g010470.1 Solanum lycopersicum Solyc12g010470.1 N 0.000
TCM_006017 Theobroma cacao TCM_006017 N 0.000
TCM_038233 Theobroma cacao TCM_038233 N 0.000
Thhalv10022828m.g Eutrema salsugineum Thhalv10022828m.g N 0.000
Traes_6AS_3CC6C63F9 Triticum aestivum Traes_6AS_3CC6C63F9 N 0.000
Traes_6BS_4DA724E79 Triticum aestivum Traes_6BS_4DA724E79 N 0.000
Traes_6BS_A7DE5BFD1 Triticum aestivum Traes_6BS_A7DE5BFD1 N 0.000
Traes_6DS_CA4C01DEF Triticum aestivum Traes_6DS_CA4C01DEF N 0.000
Traes_7AL_5E9E6A334 Triticum aestivum Traes_7AL_5E9E6A334 N 0.000
Traes_7DL_B446D4CC6 Triticum aestivum Traes_7DL_B446D4CC6 N 0.000
TRIUR3_16881 Triticum urartu TRIUR3_16881 N 0.000
TRIUR3_33737 Triticum urartu TRIUR3_33737 N 0.000
VIT_01s0011g01410 Vitis vinifera VIT_01s0011g01410 N 0.000
VIT_02s0154g00150 Vitis vinifera VIT_02s0154g00150 N 0.000
VIT_11s0118g00600 Vitis vinifera VIT_11s0118g00600 N 0.000
VIT_15s0048g00580 Vitis vinifera VIT_15s0048g00580 N 0.000