HOXA10 (Gallus gallus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGALG00000026631 T210309_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hoxc10
M00421_2.00
Mus musculus
TTWATKAB

VTMATWAA
PBM
Berger et al.(2008)
Hoxc10_2779
0.859 0.947
HOXC10
M03228_2.00
Homo sapiens
DTTTWATKDB

VHMATWAAAH
SELEX
Jolma et al.(2013)
HOXC10_1
0.859 0.947
HOXC10
M03229_2.00
Homo sapiens
NNTTWATKRB

VYMATWAANN
SELEX
Jolma et al.(2013)
HOXC10_2
0.859 0.947
HOXC10
M03230_2.00
Homo sapiens
NWTTWAYGAB

VTCRTWAAWN
SELEX
Jolma et al.(2013)
HOXC10_3
0.859 0.947
Hoxc10
M03252_2.00
Mus musculus
DTTTWAYGAY

RTCRTWAAAH
SELEX
Jolma et al.(2013)
Hoxc10_1
0.859 0.947
Hoxc10
M03253_2.00
Mus musculus
DTTTWATKRY

RYMATWAAAH
SELEX
Jolma et al.(2013)
Hoxc10_2
0.859 0.947
HOXC10
M05335_2.00
Homo sapiens
NDTTTATKRCN

NGYMATAAAHN
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_1
0.859 0.947
HOXC10
M05336_2.00
Homo sapiens
NRTCGTAAAHN

NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_2
0.859 0.947
HOXC10
M05339_2.00
Homo sapiens
NTTTTATKRCN

NGYMATAAAAN
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_1
0.859 0.947
HOXC10
M05340_2.00
Homo sapiens
NRTCGTAAAWN

NWTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_2
0.859 0.947
HOXC10
M05337_2.00
Homo sapiens
NTTTTATKRCN

NGYMATAAAAN
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_1
0.859 0.947
HOXC10
M05338_2.00
Homo sapiens
NRTCGTAAAHN

NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_2
0.859 0.947
HOXC10
M05341_2.00
Homo sapiens
DTTTTATKRCH

DGYMATAAAAH
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_1
0.859 0.947
HOXC10
M05342_2.00
Homo sapiens
VGTCGTAAAHN

NDTTTACGACB
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_2
0.859 0.947
Hoxa10
M00382_2.00
Mus musculus
NHWAYNNNN

NNNNRTWDN
PBM
Berger et al.(2008)
Hoxa10_2318
0.855 0.982
HOXA10
M05394_2.00
Homo sapiens
RRTCGTAAAAH

DTTTTACGAYY
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_1
0.855 0.982
HOXA10
M05395_2.00
Homo sapiens
NTTTTATKRCY

RGYMATAAAAN
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_2
0.855 0.982
HOXA10
M05398_2.00
Homo sapiens
NRTCRTWAANN

NNTTWAYGAYN
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_1
0.855 0.982
HOXA10
M05399_2.00
Homo sapiens
NNTTWATKRCN

NGYMATWAANN
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_2
0.855 0.982
Hoxa10
M09170_2.00
Mus musculus
DCATAAAYYRBH

DVYRRTTTATGH
Misc
Kulakovskiy et al.(2013)
HXA10_MOUSE.H11MO.0.C
0.855 0.982
Hoxa10
M10763_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA10_Q5
0.855 0.982
HOXA10
M05396_2.00
Homo sapiens
NGTCGTAAAWN

NWTTTACGACN
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_1
0.855 0.982
HOXA10
M05397_2.00
Homo sapiens
NTTTTATKRCB

VGYMATAAAAN
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_2
0.855 0.982
HOXA10
M05400_2.00
Homo sapiens
NRTCGTWAANN

NNTTWACGAYN
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_1
0.855 0.982
HOXA10
M05401_2.00
Homo sapiens
NNTTWATKRYN

NRYMATWAANN
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_2
0.855 0.982
Hoxd10
M00509_2.00
Mus musculus
NNNNNNNN

NNNNNNNN
PBM
Berger et al.(2008)
Hoxd10_2368
0.853 0.947
HOXD10
M05112_2.00
Homo sapiens
NKTTTATKRC

GYMATAAAMN
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_1
0.853 0.947
HOXD10
M05113_2.00
Homo sapiens
RTCGTAAAHN

NDTTTACGAY
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_2
0.853 0.947
HOXD10
M05116_2.00
Homo sapiens
RGTCGTAAAAH

DTTTTACGACY
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_1
0.853 0.947
HOXD10
M05117_2.00
Homo sapiens
RRYMATAAAAH

DTTTTATKRYY
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_2
0.853 0.947
HOXD10
M10687_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD10_Q2
0.853 0.947
HOXD10
M10688_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD10_Q6
0.853 0.947
HOXD10
M05114_2.00
Homo sapiens
NTTTTATKRC

GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_1
0.853 0.947
HOXD10
M05115_2.00
Homo sapiens
GTCGTAAAHN

NDTTTACGAC
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_2
0.853 0.947
HOXD10
M05118_2.00
Homo sapiens
VGTCGTAAAAH

DTTTTACGACB
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_1
0.853 0.947
HOXD10
M05119_2.00
Homo sapiens
DGYAATAAAAH

DTTTTATTRCH
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_2
0.853 0.947
Hoxa9
M00475_2.00
Mus musculus
NNDDBNNN

NNNVHHNN
PBM
Berger et al.(2008)
Hoxa9_2622
0.804 0.842
HOXA9
M03085_2.00
Homo sapiens
NNDTTWAYGAYN

NRTCRTWAAHNN
SELEX
Jolma et al.(2013)
HOXA10_1
0.804 0.842
HOXA9
M03086_2.00
Homo sapiens
NDTTWATKRYN

NRYMATWAAHN
SELEX
Jolma et al.(2013)
HOXA10_2
0.804 0.842
HOXA9
M04932_2.00
Homo sapiens
NNDWWABKRC

GYMVTWWHNN
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_1
0.804 0.842
HOXA9
M04933_2.00
Homo sapiens
NNDTWAYGRB

VYCRTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_2
0.804 0.842
Hoxa9
M08138_2.00
Mus musculus
TGATTKATKRB

VYMATMAATCA
ChIP-seq
Mathelier et al.(2014)
MA0594.1
0.804 0.842
HOXA9
M09130_2.00
Homo sapiens
DCATAAAYYRBH

DVYRRTTTATGH
Misc
Kulakovskiy et al.(2013)
HXA10_HUMAN.H11MO.0.C
0.804 0.842
HOXA9
M09131_2.00
Homo sapiens
HHATAAATCAH

DTGATTTATDD
Misc
Kulakovskiy et al.(2013)
HXA9_HUMAN.H11MO.0.B
0.804 0.842
Hoxa9
M09203_2.00
Mus musculus
HHATAAATCAH

DTGATTTATDD
Misc
Kulakovskiy et al.(2013)
HXA9_MOUSE.H11MO.0.B
0.804 0.842
Hoxa9
M09575_2.00
Mus musculus
WGATTKATDRBY

RVYHATMAATCW
Misc
Heinz et al.(2010)
HSC-Hoxa9_GSE33509
0.804 0.842
HOXA9
M10642_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA10_Q6
0.804 0.842
HOXA9
M10643_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_04
0.804 0.842
HOXA9
M10644_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_Q5_01
0.804 0.842
HOXA9
M10645_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_Q5
0.804 0.842
HOXA9
M04934_2.00
Homo sapiens
NNDTWAYKRC

GYMRTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_1
0.804 0.842
HOXA9
M04935_2.00
Homo sapiens
NNDTWACGAY

RTCGTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_2
0.804 0.842
Hoxd9
M03282_2.00
Mus musculus
TTTWATKKB

VMMATWAAA
SELEX
Jolma et al.(2013)
Hoxd9_1
0.804 0.825
Hoxd9
M03283_2.00
Mus musculus
DWTTWATKRY

RYMATWAAWH
SELEX
Jolma et al.(2013)
Hoxd9_2
0.804 0.825
Hoxd9
M03284_2.00
Mus musculus
DTTWAYGRB

VYCRTWAAH
SELEX
Jolma et al.(2013)
Hoxd9_3
0.804 0.825
HOXC9
M05331_2.00
Homo sapiens
GTCGTAAAAN

NTTTTACGAC
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_1
0.804 0.825
HOXC9
M05332_2.00
Homo sapiens
NTTTTATKRC

GYMATAAAAN
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_2
0.804 0.825
HOXD9
M05104_2.00
Homo sapiens
NTTTTATKRC

GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_1
0.804 0.825
HOXD9
M05105_2.00
Homo sapiens
RTCRTAAAWN

NWTTTAYGAY
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_2
0.804 0.825
HOXD9
M05108_2.00
Homo sapiens
RTCGTAAAWN

NWTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_1
0.804 0.825
HOXD9
M05109_2.00
Homo sapiens
NTTTTATKRC

GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_2
0.804 0.825
HOXC9
M09161_2.00
Homo sapiens
HTTWATKGCH

DGCMATWAAD
Misc
Kulakovskiy et al.(2013)
HXC9_HUMAN.H11MO.0.C
0.804 0.825
HOXD9
M10686_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD9_Q2
0.804 0.825
HOXC9
M05333_2.00
Homo sapiens
RTCGTAAAHN

NDTTTACGAY
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_1
0.804 0.825
HOXC9
M05334_2.00
Homo sapiens
NTTTWATKRC

GYMATWAAAN
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_2
0.804 0.825
HOXD9
M05106_2.00
Homo sapiens
NNTTWATKRC

GYMATWAANN
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_1
0.804 0.825
HOXD9
M05107_2.00
Homo sapiens
RTCGTAAANN

NNTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_2
0.804 0.825
HOXD9
M05110_2.00
Homo sapiens
RTCGTAAANN

NNTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_1
0.804 0.825
HOXD9
M05111_2.00
Homo sapiens
NDTTWATKRC

GYMATWAAHN
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_2
0.804 0.825
Hoxb9
M00410_2.00
Mus musculus
NTTWAYDDNN

NNHHRTWAAN
PBM
Berger et al.(2008)
Hoxb9_3413
0.804 0.807
HOXB9
M05289_2.00
Homo sapiens
RTCRTAAAWN

NWTTTAYGAY
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_1
0.804 0.807
HOXB9
M05290_2.00
Homo sapiens
NTTTWATKRC

GYMATWAAAN
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_2
0.804 0.807
HOXB9
M05291_2.00
Homo sapiens
GTCGTAAAHB

VDTTTACGAC
SELEX
Yin et al.(2017)
HOXB9_eDBD_Methyl-HT-SELEX
0.804 0.807
Hoxc9
M00470_2.00
Mus musculus
NGTAATWAAN

NTTWATTACN
PBM
Berger et al.(2008)
Hoxc9_2367
0.796 0.807
Hoxc9
M08137_2.00
Mus musculus
NWGATTTATDGSH

DSCHATAAATCWN
ChIP-seq
Mathelier et al.(2014)
MA0485.1
0.796 0.807
Hoxc9
M09574_2.00
Mus musculus
TGATTTATDGCH

DGCHATAAATCA
Misc
Heinz et al.(2010)
Ainv15-Hoxc9_GSE21812
0.796 0.807
Hoxd11
M00493_2.00
Mus musculus
DDDNNNNN

NNNNNHHH
PBM
Berger et al.(2008)
Hoxd11_3873
0.764 0.719
HOXD11
M03139_2.00
Homo sapiens
RTCGTAAAWH

DWTTTACGAY
SELEX
Jolma et al.(2013)
HOXD11_1
0.764 0.719
HOXD11
M03140_2.00
Homo sapiens
TTTWATKRBH

DVYMATWAAA
SELEX
Jolma et al.(2013)
HOXD11_2
0.764 0.719
HOXD11
M05120_2.00
Homo sapiens
NRTCGTWAANNDTWAH

DTWAHNNTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_HT-SELEX
0.764 0.719
HOXD11
M05121_2.00
Homo sapiens
NRTCGTWAAHNDTWAH

DTWAHNDTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_Methyl-HT-SELEX
0.764 0.719
Hoxc11
M00390_2.00
Mus musculus
NTTWAYDDBN

NVHHRTWAAN
PBM
Berger et al.(2008)
Hoxc11_3718
0.764 0.702
Hoxa11
M00474_2.00
Mus musculus
NNHNHNNNN

NNNNDNDNN
PBM
Berger et al.(2008)
Hoxa11_2218
0.764 0.702
HOXC11
M03131_2.00
Homo sapiens
NWTTWAYGAYH

DRTCRTWAAWN
SELEX
Jolma et al.(2013)
HOXC11_1
0.764 0.702
HOXC11
M03132_2.00
Homo sapiens
NWTTWATKRBH

DVYMATWAAWN
SELEX
Jolma et al.(2013)
HOXC11_2
0.764 0.702
HOXC11
M03133_2.00
Homo sapiens
DRTCGTWAAWN

NWTTWACGAYH
SELEX
Jolma et al.(2013)
HOXC11_3
0.764 0.702
HOXC11
M03134_2.00
Homo sapiens
NTTTTATKRBN

NVYMATAAAAN
SELEX
Jolma et al.(2013)
HOXC11_4
0.764 0.702
Hoxa11
M03274_2.00
Mus musculus
NNDTTWAYGABN

NVTCRTWAAHNN
SELEX
Jolma et al.(2013)
Hoxa11_1
0.764 0.702
Hoxa11
M03275_2.00
Mus musculus
NDTTWATKRNN

NNYMATWAAHN
SELEX
Jolma et al.(2013)
Hoxa11_2
0.764 0.702
HOXA11
M04897_2.00
Homo sapiens
VGTCGTAAAWH

DWTTTACGACB
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_1
0.764 0.702
HOXA11
M04898_2.00
Homo sapiens
DDTTWATKRSN

NSYMATWAAHH
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_2
0.764 0.702
HOXC11
M05075_2.00
Homo sapiens
NDTTWACGAYN

NRTCGTWAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_1
0.764 0.702
HOXC11
M05076_2.00
Homo sapiens
NWTTWATKRCH

DGYMATWAAWN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_2
0.764 0.702
HOXC11
M05079_2.00
Homo sapiens
NRTCGTWAAHN

NDTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_1
0.764 0.702
HOXC11
M05080_2.00
Homo sapiens
NDTTWATKRSN

NSYMATWAAHN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_2
0.764 0.702
HOXA11
M04899_2.00
Homo sapiens
NRTCGTAAAWH

DWTTTACGAYN
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_1
0.764 0.702
HOXA11
M04900_2.00
Homo sapiens
DYTTTATKRCH

DGYMATAAARH
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_2
0.764 0.702
HOXC11
M05077_2.00
Homo sapiens
NRTCGTAAAHN

NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_1
0.764 0.702
HOXC11
M05078_2.00
Homo sapiens
NDTTTATKRSN

NSYMATAAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_2
0.764 0.702
HOXC11
M05081_2.00
Homo sapiens
NRTCGTWAANN

NNTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_1
0.764 0.702
HOXC11
M05082_2.00
Homo sapiens
NNTTWAYKRSN

NSYMRTWAANN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_2
0.764 0.702
Abd-B
M00554_2.00
Drosophila melanogaster
NWTWAYDDNN

NNHHRTWAWN
PBM
Busser et al.(2012a)
Abd-B
0.651 0.702
Abd-B
M03772_2.00
Drosophila melanogaster
DRTCRTAAAWH

DWTTTAYGAYH
SELEX
Nitta et al.(2015)
Abd-B_1
0.651 0.702
Abd-B
M03773_2.00
Drosophila melanogaster
DTTTTATKRCY

RGYMATAAAAH
SELEX
Nitta et al.(2015)
Abd-B_2
0.651 0.702
Abd-B
M03774_2.00
Drosophila melanogaster
NKCARYAACGACYW

WRGTCGTTRYTGMN
SELEX
Nitta et al.(2015)
Abd-B_3
0.651 0.702
Abd-B
M03775_2.00
Drosophila melanogaster
DTTTWATGKSTTTY

RAAASMCATWAAAH
SELEX
Nitta et al.(2015)
Abd-B_4
0.651 0.702
Abd-B
M06476_2.00
Drosophila melanogaster
TTTATKR

YMATAAA
B1H
Mathelier et al.(2014)
MA0165.1
0.651 0.702
Abd-B
M06211_2.00
Drosophila melanogaster
YCATAAAA

TTTTATGR
B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015
0.651 0.702
Abd-B
M09672_2.00
Drosophila melanogaster
YMATAAAAHH

DDTTTTATKR
Misc
Kulakovskiy et al.(2009)
Abd-B
0.651 0.702
Abd-B
M10779_2.00
Drosophila melanogaster
VSNTTDATKRCNNN

NNNGYMATHAANSB
Transfac
Matys et al.(2006)
I$ABDB_01
0.651 0.702
Abd-B
M10780_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDB_Q6
0.651 0.702
abd-A
M03770_2.00
Drosophila melanogaster
NNTAATKRCN

NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_1
0.623 0.702
abd-A
M03771_2.00
Drosophila melanogaster
NNTAATKRCN

NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_2
0.623 0.702
abd-A
M06475_2.00
Drosophila melanogaster
TTAATKA

TMATTAA
B1H
Mathelier et al.(2014)
MA0206.1
0.623 0.702
abd-A
M06210_2.00
Drosophila melanogaster
WTWATKDM

KHMATWAW
B1H
Zhu et al.(2011)
Abd-A_FlyReg_FBgn0000014
0.623 0.702
abd-A
M09671_2.00
Drosophila melanogaster
HTAATKRH

DYMATTAD
Misc
Kulakovskiy et al.(2009)
abd-A
0.623 0.702
abd-A
M10778_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDA_Q6
0.623 0.702
Hoxd8
M00436_2.00
Mus musculus
NNWWYNNN

NNNRWWNN
PBM
Berger et al.(2008)
Hoxd8_2644
0.617 0.719
Ubx
M00558_2.00
Drosophila melanogaster
NWWAYDDNN

NNHHRTWWN
PBM
Busser et al.(2012a)
Ubx
0.614 0.667
Ubx
M03804_2.00
Drosophila melanogaster
NTAATKRH

DYMATTAN
SELEX
Nitta et al.(2015)
Ubx_1
0.614 0.667
Ubx
M06499_2.00
Drosophila melanogaster
NTTAATKR

YMATTAAN
B1H
Mathelier et al.(2014)
MA0094.2
0.614 0.667
Ubx
M06273_2.00
Drosophila melanogaster
NTTAATKR

YMATTAAN
B1H
Zhu et al.(2011)
Ubx_Cell_FBgn0003944
0.614 0.667
Ubx
M06274_2.00
Drosophila melanogaster
TAATKD

HMATTA
B1H
Zhu et al.(2011)
Ubx_FlyReg_FBgn0003944
0.614 0.667
Ubx
M06275_2.00
Drosophila melanogaster
NTTWATKR

YMATWAAN
B1H
Zhu et al.(2011)
Ubx_SOLEXA_FBgn0003944
0.614 0.667
Ubx
M09680_2.00
Drosophila melanogaster
TTAATKR

YMATTAA
Misc
Kulakovskiy et al.(2009)
Ubx
0.614 0.667
Ubx
M10788_2.00
Drosophila melanogaster
NNVNNNNTAATKRNBHNND

HNNDVNYMATTANNNNBNN
Transfac
Matys et al.(2006)
I$UBX_01
0.614 0.667
CBG00023
M02062_2.00
Caenorhabditis briggsae
NWWATKDNNN

NNNHMATWWN
PBM
Weirauch et al.(2014)
pTH5778
0.608 0.491
egl-5
M09581_2.00
Caenorhabditis elegans
DWTTWATGGS

SCCATWAAWH
Misc
Heinz et al.(2010)
cElegans-L3-EGL5_modEncode
0.608 0.491
Hoxa6
M00494_2.00
Mus musculus
NWWATKRNN

NNYMATWWN
PBM
Berger et al.(2008)
Hoxa6_1040
0.607 0.684
HOXA6
M04974_2.00
Homo sapiens
NNTAATKRVN

NBYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_HT-SELEX
0.607 0.684
HOXA6
M04975_2.00
Homo sapiens
NNTAATKRBN

NVYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_1
0.607 0.684
HOXA6
M04976_2.00
Homo sapiens
NTAAYGRY

RYCRTTAN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_2
0.607 0.684
Hoxc6
M00392_2.00
Mus musculus
TTAATTAB

VTAATTAA
PBM
Berger et al.(2008)
Hoxc6_3954
0.607 0.667
Q8I9J5_9BILA
M02214_2.00
Spadella cephaloptera
NVTAWTWABN

NVTWAWTABN
PBM
Weirauch et al.(2014)
pTH6164
0.605 0.579
Hoxc8
M00391_2.00
Mus musculus
NNDNYNNNN

NNNNRNHNN
PBM
Berger et al.(2008)
Hoxc8_3429
0.605 0.702
Hoxb8
M00517_2.00
Mus musculus
NWWAYNDNN

NNHNRTWWN
PBM
Berger et al.(2008)
Hoxb8_3780
0.605 0.702
HOXD8
M03221_2.00
Homo sapiens
VHWAATKWDN

NHWMATTWDB
SELEX
Jolma et al.(2013)
HOXD8_1
0.605 0.702
HOXB8
M05048_2.00
Homo sapiens
NTAATKRM

KYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_HT-SELEX
0.605 0.702
HOXC8
M04912_2.00
Homo sapiens
NYAATTRN

NYAATTRN
SELEX
Yin et al.(2017)
HOXC8_FL_HT-SELEX
0.605 0.702
HOXD8
M05310_2.00
Homo sapiens
BTAATKRY

RYMATTAV
SELEX
Yin et al.(2017)
HOXD8_eDBD_HT-SELEX
0.605 0.702
HOXB8
M09141_2.00
Homo sapiens
BMATHAATCAA

TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_HUMAN.H11MO.0.C
0.605 0.702
Hoxb8
M09214_2.00
Mus musculus
BMATHAATCAA

TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_MOUSE.H11MO.0.C
0.605 0.702
HOXC8
M10636_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXC8_Q3
0.605 0.702
HOXB8
M05049_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_1
0.605 0.702
HOXB8
M05050_2.00
Homo sapiens
NTAAYGAY

RTCRTTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_2
0.605 0.702
HOXC8
M04913_2.00
Homo sapiens
NYMATKRN

NYMATKRN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_1
0.605 0.702
HOXC8
M04914_2.00
Homo sapiens
NTWAYGRY

RYCRTWAN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_2
0.605 0.702
HOXD8
M05311_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_1
0.605 0.702
HOXD8
M05312_2.00
Homo sapiens
NTWAYGRY

RYCRTWAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_2
0.605 0.702
Hoxc12
M00508_2.00
Mus musculus
NDTWAYNDBN

NVHNRTWAHN
PBM
Berger et al.(2008)
Hoxc12_3480
0.603 0.632
HOXC12
M03135_2.00
Homo sapiens
TTTTATTRY

RYAATAAAA
SELEX
Jolma et al.(2013)
HOXC12_1
0.603 0.632
HOXC12
M03136_2.00
Homo sapiens
RRTCGTAAAAH

DTTTTACGAYY
SELEX
Jolma et al.(2013)
HOXC12_2
0.603 0.632
HOXC12
M05083_2.00
Homo sapiens
NGYAATAAAAN

NTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1
0.603 0.632
HOXC12
M05084_2.00
Homo sapiens
VRTCGTAAAHN

NDTTTACGAYB
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2
0.603 0.632
HOXC12
M05085_2.00
Homo sapiens
NGYAATAAAAH

DTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1
0.603 0.632
HOXC12
M05086_2.00
Homo sapiens
NRTCGTAAAHH

DDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2
0.603 0.632
Hoxd12_CONSTRUCT
M00538_2.00
PBM CONSTRUCTS
NWTWAYNDBN

NVHNRTWAWN
PBM
Berger et al.(2008)
Hoxd12_3481
0.603 0.614
HOXD12
M03206_2.00
Homo sapiens
SYAATAAAA

TTTTATTRS
SELEX
Jolma et al.(2013)
HOXD12_1
0.603 0.614
HOXD12
M03207_2.00
Homo sapiens
RVTCGTAAAAH

DTTTTACGABY
SELEX
Jolma et al.(2013)
HOXD12_2
0.603 0.614
HOXD12
M03208_2.00
Homo sapiens
NRTCGTAAAHN

NDTTTACGAYN
SELEX
Jolma et al.(2013)
HOXD12_3
0.603 0.614
HOXD12
M03209_2.00
Homo sapiens
DTTWATYRC

GYRATWAAH
SELEX
Jolma et al.(2013)
HOXD12_4
0.603 0.614
HOXD12
M05279_2.00
Homo sapiens
NKTWACGAYN

NRTCGTWAMN
SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX
0.603 0.614
HOXD12
M05280_2.00
Homo sapiens
NRTCGTAAAH

DTTTACGAYN
SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX
0.603 0.614
Hoxb6
M00381_2.00
Mus musculus
NNDHNNN

NNNDHNN
PBM
Berger et al.(2008)
Hoxb6_3428
0.603 0.667
HOXB6
M04999_2.00
Homo sapiens
NTAATKRY

RYMATTAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_HT-SELEX
0.603 0.667
HOXB6
M05000_2.00
Homo sapiens
HTAAYGAY

RTCRTTAD
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_1
0.603 0.667
HOXB6
M05001_2.00
Homo sapiens
NTWATKRB

VYMATWAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_2
0.603 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000018009 Homeodomain 274 330

Links

Other Homeodomain family TFs
Other Gallus gallus TFs

1391 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PDK_20s1303935g001 Phoenix dactylifera PDK_20s1303935g001 N 0.000
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N 0.000
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N 0.000
Ciclev10031389m.g Citrus clementina Ciclev10031389m.g N 0.000
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N 0.000
Carubv10008999m.g Capsella rubella Carubv10008999m.g N 0.000
Cagra.0860s0005 Capsella grandiflora Cagra.0860s0005 N 0.000
Bostr.26675s0133 Boechera stricta Bostr.26675s0133 N 0.000
Aquca_014_00674 Aquilegia coerulea Aquca_014_00674 N 0.000
Cucsa.055340 Cucumis sativus Cucsa.055340 N 0.000
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N 0.000
cassava20989.m1 Manihot esculenta cassava20989.m1 N 0.000
cassava13860.valid.m1 Manihot esculenta cassava13860.valid.m1 N 0.000
Gorai.012G080500 Gossypium raimondii Gorai.012G080500 N 0.000
Gorai.013G015100 Gossypium raimondii Gorai.013G015100 N 0.000
Gorai.013G252600 Gossypium raimondii Gorai.013G252600 N 0.000
chr3.CM0460.90.nd Lotus japonicus chr3.CM0460.90.nd N 0.000
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N 0.000
chr1.CM0794.360.nd Lotus japonicus chr1.CM0794.360.nd N 0.000
Thhalv10011447m.g Eutrema salsugineum Thhalv10011447m.g N 0.000
SapurV1A.1723s0080 Salix purpurea SapurV1A.1723s0080 N 0.000
SapurV1A.0504s0280 Salix purpurea SapurV1A.0504s0280 N 0.000
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N 0.000
SapurV1A.0009s0760 Salix purpurea SapurV1A.0009s0760 N 0.000
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N 0.000
orange1.1g011736m.g Citrus sinensis orange1.1g011736m.g N 0.000
Lus10022418.g Linum usitatissimum Lus10022418.g N 0.000
Lus10009717.g Linum usitatissimum Lus10009717.g N 0.000
cassava1376.valid.m1 Manihot esculenta cassava1376.valid.m1 N 0.000
cassava1375.valid.m1 Manihot esculenta cassava1375.valid.m1 N 0.000
30131.m007244 Ricinus communis 30131.m007244 N 0.000
PGSC0003DMG400022709 Solanum tuberosum PGSC0003DMG400022709 N 0.000
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N 0.000
MTR_5g009080 Medicago truncatula MTR_5g009080 N 0.000
MTR_4g076140 Medicago truncatula MTR_4g076140 N 0.000
GLYMA12G02490 Glycine max GLYMA12G02490 N 0.000
GLYMA11G10170 Glycine max GLYMA11G10170 N 0.000
SCL3 Arabidopsis lyrata fgenesh2_kg.1__4122__AT1G50420.1 N 0.000
Bra018848 Brassica rapa Bra018848 N 0.000
Bra014251 Brassica rapa Bra014251 N 0.000
Bo6g022200 Brassica oleracea Bo6g022200 N 0.000
Bo5g078760 Brassica oleracea Bo5g078760 N 0.000
Bo3g179450 Brassica oleracea Bo3g179450 N 0.000
POPTR_0001s06090 Populus trichocarpa POPTR_0001s06090 N 0.000
POPTR_0003s20100 Populus trichocarpa POPTR_0003s20100 N 0.000
SCL3 Populus trichocarpa POPTR_0009s05330 N 0.000
30024.m001746 Ricinus communis 30024.m001746 N 0.000
Pm012190 Prunus mume Pm012190 N 0.000
Cla006433 Citrullus lanatus Cla006433 N 0.000
Ca_27441 Cicer arietinum Ca_27441 N 0.000
Ca_11133 Cicer arietinum Ca_11133 N 0.000
VIT_13s0019g01220 Vitis vinifera VIT_13s0019g01220 N 0.000
SCL3 Vitis vinifera VIT_06s0009g02390 N 0.000
TCM_042392 Theobroma cacao TCM_042392 N 0.000
TCM_040833 Theobroma cacao TCM_040833 N 0.000
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N 0.000
Solyc01g008910.2 Solanum lycopersicum Solyc01g008910.2 N 0.000
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N 0.000
SCL3 Arabidopsis thaliana AT1G50420 N 0.000