CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ALX1
(
Gorilla gorilla
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSGGOG00000000168
T210343_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Alx1
M00471_2.00
Mus musculus
NTAATTRN
NYAATTAN
PBM
Berger et al.(2008)
Cart1_0997
0.606
0.979
Alx1
M00472_2.00
Mus musculus
NTAATDDN
NHHATTAN
PBM
Berger et al.(2008)
Cart1_1275
0.606
0.979
ALX1
M03226_2.00
Homo sapiens
NTAATTRVRTTAN
NTAAYBYAATTAN
SELEX
Jolma et al.(2013)
CART1_1
0.606
0.979
Alx1
M03272_2.00
Mus musculus
NNTAATTRRD
HYYAATTANN
SELEX
Jolma et al.(2013)
Alx1_1
0.606
0.979
Alx1
M03273_2.00
Mus musculus
NTAATYNRATTAN
NTAATYNRATTAN
SELEX
Jolma et al.(2013)
Alx1_2
0.606
0.979
ALX1
M05327_2.00
Homo sapiens
TAATYTAATTA
TAATTARATTA
SELEX
Yin et al.(2017)
ALX1_FL_HT-SELEX
0.606
0.979
ALX1
M09160_2.00
Homo sapiens
VTAATYRVATTA
TAATBYRATTAB
Misc
Kulakovskiy et al.(2013)
ALX1_HUMAN.H11MO.0.B
0.606
0.979
Alx1
M09201_2.00
Mus musculus
VTAATYRVATTA
TAATBYRATTAB
Misc
Kulakovskiy et al.(2013)
ALX1_MOUSE.H11MO.0.B
0.606
0.979
ALX1
M10741_2.00
Homo sapiens
VVHTAATKNNHATTABYN
NRVTAATDNNMATTADBB
Transfac
Matys et al.(2006)
V$CART1_01
0.606
0.979
ALX1
M05328_2.00
Homo sapiens
TAATYTAATTA
TAATTARATTA
SELEX
Yin et al.(2017)
ALX1_FL_Methyl-HT-SELEX
0.606
0.979
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000000166
Homeodomain
133
180
RRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQIQN
ENSGGOP00000025437
Homeodomain
133
189
RRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQNWRHNKKKIWQN
Links
Other
Homeodomain
family TFs
Other
Gorilla gorilla
TFs
199 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGLB003458
Biomphalaria glabrata
BGLB003458
I
0.789
AMEC003288
Anopheles melas
AMEC003288
N
0.744
maker-nMf.1.1.scaf00145-augustus-gene-0.13
Meloidogyne floridensis
maker-nMf.1.1.scaf00145-augustus-gene-0.13
I
0.737
ACHR010176
Anopheles christyi
ACHR010176
N
0.737
Cmyd_10002827
Chelonia mydas
Cmyd_10002827
N
0.733
ENSMPUG00000006459
Mustela putorius furo
ENSMPUG00000006459
I
0.732
LCUP002254
Lucilia cuprina
LCUP002254
N
0.728
NEMVEDRAFT_v1g49015
Nematostella vectensis
NEMVEDRAFT_v1g49015
I
0.721
NEMVEDRAFT_v1g48953
Nematostella vectensis
NEMVEDRAFT_v1g48953
I
0.721
NEMVEDRAFT_v1g93991
Nematostella vectensis
NEMVEDRAFT_v1g93991
I
0.707
ENSMGAG00000015339
Meleagris gallopavo
ENSMGAG00000015339
I
0.705
ENSGMOG00000015411
Gadus morhua
ENSGMOG00000015411
I
0.705
OTP
Pteropus vampyrus
ENSPVAG00000011630
I
0.705
NKX1-1
Pan troglodytes
ENSPTRG00000041220
I
0.702
CLEC000966
Cimex lectularius
CLEC000966
N
0.701
DILT_0000923301
Diphyllobothrium latum
DILT_0000923301
I
0.699
nRc.2.0.1.g34717
Romanomermis culicivorax
nRc.2.0.1.g34717
I
0.691
PXEA_0001895501
Protopolystoma xenopodis
PXEA_0001895501
I
0.689
C_01031
Schistosoma haematobium
C_01031
I
0.687
Smp_189380
Schistosoma mansoni
Smp_189380
I
0.687
C_01032
Schistosoma haematobium
C_01032
I
0.687
SMTD_0002280601
Schistosoma mattheei
SMTD_0002280601
I
0.687
SROB_0001108301
Schistosoma rodhaini
SROB_0001108301
I
0.687
PEQ_0000006101
Parascaris equorum
PEQ_0000006101
N
0.685
ISCW024267
Ixodes scapularis
ISCW024267
I
0.682
WUBG_03794
Wuchereria bancrofti
WUBG_03794
N
0.676
ENSGMOG00000011340
Gadus morhua
ENSGMOG00000011340
N
0.675
ACOM034313
Anopheles coluzzii
ACOM034313
I
0.674
ANCDUO_14705
Ancylostoma duodenale
ANCDUO_14705
I
0.674
e_gw.549.21.1
Branchiostoma floridae
e_gw.549.21.1
I
0.674
ANCCEY_05038
Ancylostoma ceylanicum
ANCCEY_05038
I
0.674
AARA006634
Anopheles arabiensis
AARA006634
I
0.668
AQUA001638
Anopheles quadriannulatus
AQUA001638
I
0.668
ACOM028612
Anopheles coluzzii
ACOM028612
I
0.668
AGAP003574
Anopheles gambiae
AGAP003574
I
0.668
nLs.2.1.2.g00296
Litomosoides sigmodontis
nLs.2.1.2.g00296
I
0.665
MCINX000309
Melitaea cinxia
MCINX000309
I
0.665
NECAME_15973
Necator americanus
NECAME_15973
I
0.663
SCUD_0001719701
Schistosoma curassoni
SCUD_0001719701
I
0.663
Smp_165410
Schistosoma mansoni
Smp_165410
I
0.663
TCLT_0000599001
Thelazia callipaeda
TCLT_0000599001
I
0.662
GPUH_0002067401
Gongylonema pulchrum
GPUH_0002067401
I
0.662
OFLC_0000069201
Onchocerca flexuosa
OFLC_0000069201
I
0.662
WBGene00245266
Onchocerca volvulus
WBGene00245266
I
0.662
PDX1
Dasypus novemcinctus
ENSDNOG00000003213
I
0.660
EVEC_0000662001
Enterobius vermicularis
EVEC_0000662001
I
0.660
ASIM_0001502101
Anisakis simplex
ASIM_0001502101
I
0.657
tetur14g02380
Tetranychus urticae
tetur14g02380
I
0.657
Hba_17613
Heterorhabditis bacteriophora
Hba_17613
I
0.657
ALUE_0001238401
Ascaris lumbricoides
ALUE_0001238401
I
0.657
WUBG_01783
Wuchereria bancrofti
WUBG_01783
I
0.657
TCLT_0000305201
Thelazia callipaeda
TCLT_0000305201
I
0.654
NBR_0000568501
Nippostrongylus brasiliensis
NBR_0000568501
I
0.654
LOAG_17577
Loa loa
LOAG_17577
N
0.654
PEQ_0000367601
Parascaris equorum
PEQ_0000367601
I
0.654
ENSGACG00000020715
Gasterosteus aculeatus
ENSGACG00000020715
I
0.653
ENSGMOG00000006424
Gadus morhua
ENSGMOG00000006424
I
0.653
ASIM_0001653501
Anisakis simplex
ASIM_0001653501
I
0.652
TCNE_0001765901
Toxocara canis
TCNE_0001765901
I
0.652
ASIM_0000400001
Anisakis simplex
ASIM_0000400001
I
0.652
DME_0001008101
Dracunculus medinensis
DME_0001008101
I
0.652
EEL_0000392901
Elaeophora elaphi
EEL_0000392901
I
0.652
nOo.2.0.1.g00955
Onchocerca ochengi
nOo.2.0.1.g00955
I
0.652
WUBG_02861
Wuchereria bancrofti
WUBG_02861
I
0.652
PEQ_0001172001
Parascaris equorum
PEQ_0001172001
I
0.650
nAv.1.0.1.g03166
Acanthocheilonema viteae
nAv.1.0.1.g03166
I
0.650
ENSPFOG00000017586
Poecilia formosa
ENSPFOG00000017586
I
0.650
ACAC_0000394201
Angiostrongylus cantonensis
ACAC_0000394201
I
0.650
ENSPANG00000025837
Papio anubis
ENSPANG00000025837
I
0.650
BTMF_0000584401
Brugia timori
BTMF_0000584401
I
0.650
L893_g26530
Steinernema glaseri
L893_g26530
I
0.650
CGOC_0000550601
Cylicostephanus goldi
CGOC_0000550601
I
0.650
TELCIR_07155
Teladorsagia circumcincta
TELCIR_07155
I
0.650
DME_0000365001
Dracunculus medinensis
DME_0000365001
I
0.647
augustus_masked-nMf.1.1.scaf12078-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf12078-processed-gene-0.0
I
0.646
OFLC_0001568801
Onchocerca flexuosa
OFLC_0001568801
I
0.646
PXEA_0002510601
Protopolystoma xenopodis
PXEA_0002510601
I
0.646
TRE_0000860801
Trichobilharzia regenti
TRE_0000860801
I
0.646
SCUD_0000812901
Schistosoma curassoni
SCUD_0000812901
I
0.646
ENSTSYG00000012674
Tarsius syrichta
ENSTSYG00000012674
I
0.645
PEQ_0000070601
Parascaris equorum
PEQ_0000070601
N
0.645
ANCDUO_02875
Ancylostoma duodenale
ANCDUO_02875
I
0.644
WBGene00242173
Onchocerca volvulus
WBGene00242173
I
0.644
GPUH_0000001901
Gongylonema pulchrum
GPUH_0000001901
I
0.644
LOAG_02387
Loa loa
LOAG_02387
I
0.644
nOo.2.0.1.g01207
Onchocerca ochengi
nOo.2.0.1.g01207
I
0.644
SMUV_0000715401
Syphacia muris
SMUV_0000715401
N
0.642
MEOX1
Bos taurus
ENSBTAG00000015751
I
0.640
ENSPFOG00000024523
Poecilia formosa
ENSPFOG00000024523
I
0.635
TsM_000296500
Taenia solium
TsM_000296500
I
0.634
PXEA_0001255201
Protopolystoma xenopodis
PXEA_0001255201
I
0.634
Aan_R000875
Calypte anna
Aan_R000875
I
0.634
CapteG30874
Capitella teleta
CapteG30874
I
0.634
TASK_0000431401
Taenia asiatica
TASK_0000431401
I
0.634
ASIS004766
Anopheles sinensis
ASIS004766
I
0.634
LLOJ004353
Lutzomyia longipalpis
LLOJ004353
I
0.634
Smp_125600
Schistosoma mansoni
Smp_125600
I
0.634
ACUA028387
Anopheles culicifacies
ACUA028387
I
0.634
CGI_10009942
Crassostrea gigas
CGI_10009942
I
0.634
Alligator_sinensis_CCG007467.1
Alligator sinensis
Alligator_sinensis_CCG007467.1
I
0.634
DAPPUDRAFT_55144
Daphnia pulex
DAPPUDRAFT_55144
I
0.634
Sakowv30043910m.g
Saccoglossus kowalevskii
Sakowv30043910m.g
I
0.634
CLEC007879
Cimex lectularius
CLEC007879
I
0.634
Afo_R001648
Aptenodytes forsteri
Afo_R001648
I
0.634
SINV18014
Solenopsis invicta
SINV18014
I
0.634
BARHL1
Felis catus
ENSFCAG00000007105
I
0.634
LotgiG120200
Lottia gigantea
LotgiG120200
I
0.634
BARHL2
Monodelphis domestica
ENSMODG00000012056
I
0.634
ENSMGAG00000006701
Meleagris gallopavo
ENSMGAG00000006701
I
0.634
MESCA003890
Megaselia scalaris
MESCA003890
I
0.634
MESCA011262
Megaselia scalaris
MESCA011262
I
0.634
ENSORLG00000012370
Oryzias latipes
ENSORLG00000012370
I
0.634
BARHL2
Vicugna pacos
ENSVPAG00000005913
I
0.634
ENSOARG00000018096
Ovis aries
ENSOARG00000018096
I
0.633
ENSGGOG00000027271
Gorilla gorilla
ENSGGOG00000027271
I
0.633
ASIS018158
Anopheles sinensis
ASIS018158
N
0.626
ALUE_0001765001
Ascaris lumbricoides
ALUE_0001765001
I
0.624
alx4b
Danio rerio
ENSDARG00000074442
I
0.618
MNX1
Homo sapiens
ENSG00000130675
D
0.618
HOXC4
Procavia capensis
ENSPCAG00000011039
I
0.614
TriadG9178
Trichoplax adhaerens
TriadG9178
N
0.612
ARX
Loxodonta africana
ENSLAFG00000001779
I
0.612
YQE_04150
Dendroctonus ponderosae
YQE_04150
I
0.607
ALX1
Monodelphis domestica
ENSMODG00000020494
I
0.606
ALX1
Anolis carolinensis
ENSACAG00000011108
I
0.606
ALX1
Bos taurus
ENSBTAG00000014977
I
0.606
ALX1
Myotis lucifugus
ENSMLUG00000008586
I
0.606
ALX1
Canis familiaris
ENSCAFG00000005972
I
0.606
ENSMICG00000012977
Microcebus murinus
ENSMICG00000012977
I
0.606
ALX1
Cavia porcellus
ENSCPOG00000027131
I
0.606
ENSMPUG00000007727
Mustela putorius furo
ENSMPUG00000007727
I
0.606
ALX1
Ornithorhynchus anatinus
ENSOANG00000006647
I
0.606
ENSOARG00000015379
Ovis aries
ENSOARG00000015379
I
0.606
ENSAMXG00000003941
Astyanax mexicanus
ENSAMXG00000003941
I
0.606
ENSNLEG00000005381
Nomascus leucogenys
ENSNLEG00000005381
I
0.606
Alx1
Mus musculus
ENSMUSG00000036602
D
0.606
alx1
Danio rerio
ENSDARG00000062824
I
0.606
ENSAPLG00000001231
Anas platyrhynchos
ENSAPLG00000001231
I
0.606
ENSLOCG00000016343
Lepisosteus oculatus
ENSLOCG00000016343
I
0.606
ALX1
Loxodonta africana
ENSLAFG00000013544
I
0.606
ENSFALG00000010547
Ficedula albicollis
ENSFALG00000010547
I
0.606
ALX1
Callithrix jacchus
ENSCJAG00000019458
I
0.606
ALX1
Felis catus
ENSFCAG00000024706
I
0.606
ALX1
Echinops telfairi
ENSETEG00000010288
I
0.606
ALX1
Erinaceus europaeus
ENSEEUG00000000089
I
0.606
Alx1
Dipodomys ordii
ENSDORG00000011021
I
0.606
ALX1
Equus caballus
ENSECAG00000008597
I
0.606
ALX1
Oryctolagus cuniculus
ENSOCUG00000009125
I
0.606
ALX1
Homo sapiens
ENSG00000180318
D
0.606
ENSLACG00000006482
Latimeria chalumnae
ENSLACG00000006482
I
0.606
ENSCSAG00000003845
Chlorocebus sabaeus
ENSCSAG00000003845
I
0.606
ENSGMOG00000007917
Gadus morhua
ENSGMOG00000007917
I
0.606
ALX1
Choloepus hoffmanni
ENSCHOG00000008308
I
0.606
alx1
Gasterosteus aculeatus
ENSGACG00000009557
I
0.606
ALX1
Gallus gallus
ENSGALG00000027213
I
0.606
ALX1
Dasypus novemcinctus
ENSDNOG00000019645
I
0.606
alx1
Oryzias latipes
ENSORLG00000002662
I
0.606
Pvit_07518
Pogona vitticeps
Pvit_07518
I
0.606
Ogr09207
Ophisaurus gracilis
Ogr09207
I
0.606
Myotis_brandtii_ALX1_10011031
Myotis brandtii
Myotis_brandtii_ALX1_10011031
I
0.606
Tal_R010080
Tyto alba
Tal_R010080
I
0.606
ALX1
Tursiops truncatus
ENSTTRG00000014650
I
0.606
ALX1
Taeniopygia guttata
ENSTGUG00000007899
I
0.606
alx1
Takifugu rubripes
ENSTRUG00000012686
I
0.606
ENSTSYG00000013252
Tarsius syrichta
ENSTSYG00000013252
I
0.606
Gfo_R005135
Geospiza fortis
Gfo_R005135
I
0.606
ENSP00000315417
Macaca fascicularis
ENSP00000315417
I
0.606
Afo_R009660
Aptenodytes forsteri
Afo_R009660
I
0.606
ENSXMAG00000002854
Xiphophorus maculatus
ENSXMAG00000002854
I
0.606
Aan_R010911
Calypte anna
Aan_R010911
I
0.606
Alligator_sinensis_CCG000480.1
Alligator sinensis
Alligator_sinensis_CCG000480.1
I
0.606
Brh_R010921
Buceros rhinoceros
Brh_R010921
I
0.606
ENSBTAP00000019938-D1
Bos grunniens
ENSBTAP00000019938-D1
I
0.606
Cmyd_10009139
Chelonia mydas
Cmyd_10009139
I
0.606
ALX1
Vicugna pacos
ENSVPAG00000003559
I
0.606
Sjc_0076920
Schistosoma japonicum
Sjc_0076920
I
0.606
ALX1
Tupaia belangeri
ENSTBEG00000005133
I
0.606
ALX1
Procavia capensis
ENSPCAG00000011229
I
0.606
ENSPFOG00000012120
Poecilia formosa
ENSPFOG00000012120
I
0.606
ENSPPYG00000004809
Pongo abelii
ENSPPYG00000004809
I
0.606
ENSPANG00000005930
Papio anubis
ENSPANG00000005930
I
0.606
ENSAMEG00000009049
Ailuropoda melanoleuca
ENSAMEG00000009049
I
0.606
ALX1
Otolemur garnettii
ENSOGAG00000014211
I
0.606
ENSONIG00000003839
Oreochromis niloticus
ENSONIG00000003839
I
0.606
ALX1
Ochotona princeps
ENSOPRG00000007282
I
0.606
ENSPSIG00000007876
Pelodiscus sinensis
ENSPSIG00000007876
I
0.606
ENSPSIG00000005438
Pelodiscus sinensis
ENSPSIG00000005438
I
0.606
ENSSTOG00000026970
Ictidomys tridecemlineatus
ENSSTOG00000026970
I
0.606
alx1.L
Xenopus laevis
XB-GENE-866461
I
0.606
alx1
Xenopus tropicalis
XB-GENE-853095
I
0.606
ALX1
Sorex araneus
ENSSARG00000000186
I
0.606
ENSSSCG00000000933
Sus scrofa
ENSSSCG00000000933
I
0.606
ALX1
Pan troglodytes
ENSPTRG00000005272
I
0.606
Alx1
Rattus norvegicus
ENSRNOG00000004390
I
0.606
DAPPUDRAFT_62565
Daphnia pulex
DAPPUDRAFT_62565
I
0.603
ENSMGAG00000011132
Meleagris gallopavo
ENSMGAG00000011132
I
0.603
SCLCIDRAFT_964190
Scleroderma citrinum
SCLCIDRAFT_964190
N
0.602
ISX
Otolemur garnettii
ENSOGAG00000004339
I
0.601
ENSAMXG00000014772
Astyanax mexicanus
ENSAMXG00000014772
I
0.600