ENSGMOG00000004622 (Gadus morhua)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGMOG00000004622 T210579_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN

NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.783 0.877
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB

VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.783 0.877
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB

VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.783 0.877
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB

VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.783 0.877
Hnf1b
M00408_2.00
Mus musculus
NNHWCNNN

NNNGWDNN
PBM
Berger et al.(2008)
Tcf2_0913
0.683 0.404
Hnf1a
M00171_2.00
Mus musculus
HTAAYYNN

NNRRTTAD
PBM
Badis et al.(2009)
Tcf1_2666
0.683 0.404
Hnf1a
M00444_2.00
Mus musculus
HTAAYYNNN

NNNRRTTAD
PBM
Berger et al.(2008)
Tcf1_2666
0.683 0.404
HNF1A
M03150_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1A_1
0.683 0.404
HNF1B
M03245_2.00
Homo sapiens
GTTAATNATTAAY

RTTAATNATTAAC
SELEX
Jolma et al.(2013)
HNF1B_1
0.683 0.404
HNF1B
M03246_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1B_2
0.683 0.404
HNF1A
M09144_2.00
Homo sapiens
DGTTAATKATTAACH

DGTTAATMATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C
0.683 0.404
HNF1B
M09168_2.00
Homo sapiens
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A
0.683 0.404
Hnf1a
M09191_2.00
Mus musculus
RGTTAATNWTTDMHN

NDKHAAWNATTAACY
Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A
0.683 0.404
Hnf1b
M09179_2.00
Mus musculus
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A
0.683 0.404
HNF1A
M10690_2.00
Homo sapiens
RGTTAATDWTTRMHV

BDKYAAWHATTAACY
Transfac
Matys et al.(2006)
V$HNF1_01
0.683 0.404
HNF1A
M10691_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q4
0.683 0.404
HNF1A
M10692_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q5
0.683 0.404
HNF1B
M10758_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6_01
0.683 0.404
HNF1B
M10759_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6
0.683 0.404
HNF1A
M10693_2.00
Homo sapiens
DGBTAATBAWTHAMYWM

KWRKTDAWTVATTAVCH
Transfac
Matys et al.(2006)
V$HNF1_C
0.683 0.404
HNF1B
M10760_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LFA1_Q6
0.683 0.404
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGMOP00000004910 Homeodomain 247 318

Links

Other Homeodomain family TFs
Other Gadus morhua TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R007409 Calypte anna Aan_R007409 I 0.000
Aan_R013725 Calypte anna Aan_R013725 I 0.000
Afo_R001855 Aptenodytes forsteri Afo_R001855 I 0.000
Afo_R010573 Aptenodytes forsteri Afo_R010573 I 0.000
Brh_R002393 Buceros rhinoceros Brh_R002393 I 0.000
Brh_R008700 Buceros rhinoceros Brh_R008700 I 0.000
DME_0000497501 Dracunculus medinensis DME_0000497501 I 0.000
E2f5 Dipodomys ordii ENSDORG00000011212 I 0.000
E2F5 Vicugna pacos ENSVPAG00000003343 I 0.000
E2F5 Meleagris gallopavo ENSMGAG00000011709 I 0.000
E2F5 Bos taurus ENSBTAG00000009378 I 0.000
E2F5 Canis familiaris ENSCAFG00000008628 I 0.000
E2F5 Callithrix jacchus ENSCJAG00000000387 I 0.000
E2F5 Equus caballus ENSECAG00000013766 I 0.000
E2F5 Microcebus murinus ENSMICG00000003567 I 0.000
E2F5 Erinaceus europaeus ENSEEUG00000014470 I 0.000
ENSAPLG00000005664 Anas platyrhynchos ENSAPLG00000005664 I 0.000
ENSAPLG00000016108 Anas platyrhynchos ENSAPLG00000016108 I 0.000
ENSMEUG00000012534 Macropus eugenii ENSMEUG00000012534 I 0.000
ENSMMUP00000008413 Macaca fascicularis ENSMMUP00000008413 I 0.000
ENSMPUG00000010751 Mustela putorius furo ENSMPUG00000010751 I 0.000
ENSNLEG00000004342 Nomascus leucogenys ENSNLEG00000004342 I 0.000
ENSOARG00000013715 Ovis aries ENSOARG00000013715 I 0.000
ENSPMAG00000000488 Petromyzon marinus ENSPMAG00000000488 I 0.000
ENSSHAG00000011240 Sarcophilus harrisii ENSSHAG00000011240 I 0.000
ENSSHAG00000011293 Sarcophilus harrisii ENSSHAG00000011293 I 0.000
ENSSTOG00000013339 Ictidomys tridecemlineatus ENSSTOG00000013339 I 0.000
ENSTSYG00000014083 Tarsius syrichta ENSTSYG00000014083 I 0.000
estExt_gwp_gw1.C_2190085 Physcomitrella patens estExt_gwp_gw1.C_2190085 I 0.000
Gfo_R014499 Geospiza fortis Gfo_R014499 I 0.000
Gfo_R016024 Geospiza fortis Gfo_R016024 I 0.000
GSPATT00007324001 Paramecium tetraurelia GSPATT00007324001 I 0.000
GSPATT00025620001 Paramecium tetraurelia GSPATT00025620001 N 0.000
GSPATT00030846001 Paramecium tetraurelia GSPATT00030846001 N 0.000
GSPATT00033184001 Paramecium tetraurelia GSPATT00033184001 N 0.000
ISCW000457 Ixodes scapularis ISCW000457 I 0.000
LjSGA_030786.1 Lotus japonicus LjSGA_030786.1 I 0.000
PGSC0003DMG401008915 Solanum tuberosum PGSC0003DMG401008915 I 0.000
Solyc09g010670.2 Solanum lycopersicum Solyc09g010670.2 I 0.000
Tal_R001534 Tyto alba Tal_R001534 I 0.000
Tal_R005486 Tyto alba Tal_R005486 I 0.000
Traes_3AL_D7DE23839 Triticum aestivum Traes_3AL_D7DE23839 I 0.000
Traes_3DL_1E9DECCEA Triticum aestivum Traes_3DL_1E9DECCEA I 0.000
XP_002169779.1 Hydra magnipapillata XP_002169779.1 I 0.000