ENSLACG00000011304 (Latimeria chalumnae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSLACG00000011304 T210836_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN

NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.828 0.930
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB

VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.828 0.930
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB

VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.828 0.930
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB

VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.828 0.930
Hnf1b
M00408_2.00
Mus musculus
NNHWCNNN

NNNGWDNN
PBM
Berger et al.(2008)
Tcf2_0913
0.638 0.368
Hnf1a
M00171_2.00
Mus musculus
HTAAYYNN

NNRRTTAD
PBM
Badis et al.(2009)
Tcf1_2666
0.638 0.368
Hnf1a
M00444_2.00
Mus musculus
HTAAYYNNN

NNNRRTTAD
PBM
Berger et al.(2008)
Tcf1_2666
0.638 0.368
HNF1A
M03150_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1A_1
0.638 0.368
HNF1B
M03245_2.00
Homo sapiens
GTTAATNATTAAY

RTTAATNATTAAC
SELEX
Jolma et al.(2013)
HNF1B_1
0.638 0.368
HNF1B
M03246_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1B_2
0.638 0.368
HNF1A
M09144_2.00
Homo sapiens
DGTTAATKATTAACH

DGTTAATMATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C
0.638 0.368
HNF1B
M09168_2.00
Homo sapiens
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A
0.638 0.368
Hnf1a
M09191_2.00
Mus musculus
RGTTAATNWTTDMHN

NDKHAAWNATTAACY
Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A
0.638 0.368
Hnf1b
M09179_2.00
Mus musculus
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A
0.638 0.368
HNF1A
M10690_2.00
Homo sapiens
RGTTAATDWTTRMHV

BDKYAAWHATTAACY
Transfac
Matys et al.(2006)
V$HNF1_01
0.638 0.368
HNF1A
M10691_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q4
0.638 0.368
HNF1A
M10692_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q5
0.638 0.368
HNF1B
M10758_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6_01
0.638 0.368
HNF1B
M10759_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6
0.638 0.368
HNF1A
M10693_2.00
Homo sapiens
DGBTAATBAWTHAMYWM

KWRKTDAWTVATTAVCH
Transfac
Matys et al.(2006)
V$HNF1_C
0.638 0.368
HNF1B
M10760_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LFA1_Q6
0.638 0.368
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000012837 Homeodomain 247 318
ENSLACP00000012838 Homeodomain 323 394

Links

Other Homeodomain family TFs
Other Latimeria chalumnae TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R001674 Calypte anna Aan_R001674 I 0.000
Afo_R011034 Aptenodytes forsteri Afo_R011034 I 0.000
Alligator_sinensis_CCG004420.1 Alligator sinensis Alligator_sinensis_CCG004420.1 I 0.000
Brh_R003425 Buceros rhinoceros Brh_R003425 I 0.000
Cmyd_10012311 Chelonia mydas Cmyd_10012311 I 0.000
ZBTB1 Anolis carolinensis ENSACAG00000015782 I 0.000
ENSAMEG00000019557 Ailuropoda melanoleuca ENSAMEG00000019557 I 0.000
ENSAPLG00000001073 Anas platyrhynchos ENSAPLG00000001073 I 0.000
ZBTB1 Bos taurus ENSBTAG00000040551 I 0.000
ZBTB1 Canis familiaris ENSCAFG00000016030 I 0.000
ZBTB1 Callithrix jacchus ENSCJAG00000019591 I 0.000
ZBTB1 Cavia porcellus ENSCPOG00000011379 I 0.000
ENSCSAG00000013784 Chlorocebus sabaeus ENSCSAG00000013784 N 0.000
ZBTB1 Dasypus novemcinctus ENSDNOG00000015051 I 0.000
ZBTB1 Equus caballus ENSECAG00000017704 N 0.000
ZBTB1 Erinaceus europaeus ENSEEUG00000006621 N 0.000
ENSFALG00000003127 Ficedula albicollis ENSFALG00000003127 N 0.000
ZBTB1 Felis catus ENSFCAG00000031472 I 0.000
ZBTB1 Gorilla gorilla ENSGGOG00000016483 I 0.000
ENSLACG00000016384 Latimeria chalumnae ENSLACG00000016384 I 0.000
ZBTB1 Loxodonta africana ENSLAFG00000018528 I 0.000
ZBTB1 Meleagris gallopavo ENSMGAG00000015392 I 0.000
ZBTB1 Myotis lucifugus ENSMLUG00000016560 I 0.000
ZBTB1 Monodelphis domestica ENSMODG00000023946 I 0.000
ENSMPUG00000006735 Mustela putorius furo ENSMPUG00000006735 N 0.000
Zbtb1 Mus musculus ENSMUSG00000033454 D 0.000
ENSNLEG00000014246 Nomascus leucogenys ENSNLEG00000014246 I 0.000
ZBTB1 Ornithorhynchus anatinus ENSOANG00000009456 N 0.000
ENSOARG00000001006 Ovis aries ENSOARG00000001006 I 0.000
ZBTB1 Oryctolagus cuniculus ENSOCUG00000011740 I 0.000
ZBTB1 Otolemur garnettii ENSOGAG00000016795 I 0.000
ZBTB1 Ochotona princeps ENSOPRG00000010400 I 0.000
ENSP00000378201 Macaca fascicularis ENSP00000378201 I 0.000
ENSP00000378201-D1 Bos grunniens ENSP00000378201-D1 I 0.000
ENSPANG00000019917 Papio anubis ENSPANG00000019917 N 0.000
ENSPPYG00000005901 Pongo abelii ENSPPYG00000005901 N 0.000
ZBTB1 Pan troglodytes ENSPTRG00000006438 I 0.000
ZBTB1 Pteropus vampyrus ENSPVAG00000017582 I 0.000
Zbtb1 Rattus norvegicus ENSRNOG00000058593 N 0.000
ZBTB1 Sorex araneus ENSSARG00000011925 N 0.000
ENSSHAG00000010188 Sarcophilus harrisii ENSSHAG00000010188 I 0.000
ZBTB1 Sus scrofa ENSSSCG00000023724 I 0.000
ENSSTOG00000028335 Ictidomys tridecemlineatus ENSSTOG00000028335 I 0.000
ZBTB1 Taeniopygia guttata ENSTGUG00000012931 I 0.000
ZBTB1 Tursiops truncatus ENSTTRG00000000531 I 0.000
ZBTB1 Vicugna pacos ENSVPAG00000004877 I 0.000
Gfo_R006806 Geospiza fortis Gfo_R006806 I 0.000
Myotis_brandtii_ZBTB1_10027143 Myotis brandtii Myotis_brandtii_ZBTB1_10027143 N 0.000
Ogr05927 Ophisaurus gracilis Ogr05927 I 0.000
Pvit_18915 Pogona vitticeps Pvit_18915 I 0.000
Tal_R000310 Tyto alba Tal_R000310 I 0.000