CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSLACG00000016442
(
Latimeria chalumnae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSLACG00000016442
T210902_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pbx1
M09213_2.00
Mus musculus
TGABTGRCRGV
BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PBX1_MOUSE.H11MO.0.A
0.816
0.913
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLACP00000018673
Homeodomain
238
286
RRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVTS
ENSLACP00000018674
Homeodomain
170
218
RRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVTS
Links
Other
Homeodomain
family TFs
Other
Latimeria chalumnae
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy