ENSLACG00000017763 (Latimeria chalumnae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSLACG00000017763 T210936_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.710 0.873
Irx3
M00453_2.00 		Mus musculus
NNDACAHNNN
NNNDTGTHNN		 PBM
Berger et al.(2008)
Irx3_0920 		0.676 0.895
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.691 0.909
Irx3
M00454_2.00 		Mus musculus
NNDACWHN
NDWGTHNN		 PBM
Berger et al.(2008)
Irx3_2226 		0.676 0.895
Irx3
M03266_2.00 		Mus musculus
WWTKTCATGTWR
YWACATGAMAWW		 SELEX
Jolma et al.(2013)
Irx3_1 		0.676 0.895
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.691 0.909
IRX1
M05283_2.00 		Homo sapiens
DDCRHNNNNNNNNDYGHH
DDCRHNNNNNNNNDYGHH		 SELEX
Yin et al.(2017)
IRX1_eDBD_HT-SELEX 		0.676 0.895
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.691 0.909
IRX3
M05319_2.00 		Homo sapiens
DACAHGNWWWWNCDTGTH
DACAHGNWWWWNCDTGTH		 SELEX
Yin et al.(2017)
IRX3_eDBD_HT-SELEX 		0.676 0.895
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.691 0.873
IRX1
M05284_2.00 		Homo sapiens
NNCRHNNNNNNNNDYVHN
NDBRHNNNNNNNNDYGNN		 SELEX
Yin et al.(2017)
IRX1_eDBD_Methyl-HT-SELEX 		0.676 0.895
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.683 0.855
IRX3
M05320_2.00 		Homo sapiens
DACRYRHNWWNDYKCGTW
WACGMRHNWWNDYRYGTH		 SELEX
Yin et al.(2017)
IRX3_eDBD_Methyl-HT-SELEX 		0.676 0.895
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.683 0.855
mirr
M06514_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0233.1 		0.676 0.877
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.683 0.855
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.671 0.855
mirr
M06305_2.00 		Drosophila melanogaster
NDNWWACA
TGTWWNHN		 B1H
Zhu et al.(2011)
Mirr_Cell_FBgn0014343 		0.676 0.877
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.671 0.855
mirr
M06306_2.00 		Drosophila melanogaster
DDWACA
TGTWHH		 B1H
Zhu et al.(2011)
Mirr_SOLEXA_FBgn0014343 		0.676 0.877
SNAPOd2T00005194001
M02229_2.00 		Oikopleura dioica
NNTACATGTDN
NHACATGTANN		 PBM
Weirauch et al.(2014)
pTH5976 		0.651 0.719
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.671 0.855
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.671 0.855
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.671 0.855
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.671 0.855
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000020210 Homeodomain 105 162
ENSLACP00000020211 Homeodomain 87 145

Links

Other Homeodomain family TFs
Other Latimeria chalumnae TFs

Invalid Input OrderBy

651 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action