ENSLOCG00000016371 (Lepisosteus oculatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSLOCG00000016371 T211304_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Six2
M00425_2.00
Mus musculus
NNAYMYNN

NNRKRTNN
PBM
Berger et al.(2008)
Six2_2307
0.866 0.982
SIX2
M05285_2.00
Homo sapiens
NNYGATACSB

VSGTATCRNN
SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX
0.866 0.982
SIX2
M05287_2.00
Homo sapiens
NSGTRWCRYN

NRYGWYACSN
SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX
0.866 0.982
SIX2
M08133_2.00
Homo sapiens
NNNTGWAACCTGAKMH

DKMTCAGGTTWCANNN
ChIP-seq
Mathelier et al.(2014)
MA1119.1
0.866 0.982
SIX2
M09157_2.00
Homo sapiens
DGWAAYHHGABMH

DKVTCDDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A
0.866 0.982
Six2
M09185_2.00
Mus musculus
DGWAAYHYRABMYB

VRKVTYRDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A
0.866 0.982
SIX2
M05286_2.00
Homo sapiens
NBRTATCRNN

NNYGATAYVN
SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX
0.866 0.982
SIX2
M05288_2.00
Homo sapiens
VBRTAWCRNN

NNYGWTAYVB
SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX
0.866 0.982
so
M02117_2.00
Drosophila melanogaster
NDATMYNNN

NNNRKATHN
PBM
Weirauch et al.(2014)
pTH5690
0.866 0.945
so
M03800_2.00
Drosophila melanogaster
NYGATAYB

VRTATCRN
SELEX
Nitta et al.(2015)
so_1
0.866 0.945
so
M03801_2.00
Drosophila melanogaster
YKATAYNNNYGATAY

RTATCRNNNRTATMR
SELEX
Nitta et al.(2015)
so_2
0.866 0.945
so
M03802_2.00
Drosophila melanogaster
YGATACGTATCR

YGATACGTATCR
SELEX
Nitta et al.(2015)
so_3
0.866 0.945
so
M03803_2.00
Drosophila melanogaster
RTATCRYGATAC

GTATCRYGATAY
SELEX
Nitta et al.(2015)
so_4
0.866 0.945
so
M06497_2.00
Drosophila melanogaster
TGATAC

GTATCA
B1H
Mathelier et al.(2014)
MA0246.1
0.866 0.945
so
M06268_2.00
Drosophila melanogaster
NRTGATA

TATCAYN
B1H
Zhu et al.(2011)
So_Cell_FBgn0003460
0.866 0.945
so
M06269_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460
0.866 0.945
Six1
M00512_2.00
Mus musculus
NNDATMYNNN

NNNRKATHNN
PBM
Berger et al.(2008)
Six1_0935
0.864 0.964
SIX1
M05094_2.00
Homo sapiens
NNYGATACVB

VBGTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX
0.864 0.964
SIX1
M05096_2.00
Homo sapiens
NNYGATAYVB

VBRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX
0.864 0.964
SIX1
M08130_2.00
Homo sapiens
GWAACCTGANM

KNTCAGGTTWC
ChIP-seq
Mathelier et al.(2014)
MA1118.1
0.864 0.964
SIX1
M09142_2.00
Homo sapiens
DGWAAYHTGABMYN

NRKVTCADRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A
0.864 0.964
Six1
M09579_2.00
Mus musculus
GWAAYHTGABMH

DKVTCADRTTWC
Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150
0.864 0.964
SIX1
M10684_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3_01
0.864 0.964
SIX1
M10685_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3
0.864 0.964
SIX1
M05095_2.00
Homo sapiens
NNYGATABNB

VNVTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX
0.864 0.964
SIX1
M05097_2.00
Homo sapiens
NNYGATAYSB

VSRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX
0.864 0.964
Six4
M00461_2.00
Mus musculus
NNKABMHNN

NNDKVTMNN
PBM
Berger et al.(2008)
Six4_2860
0.708 0.709
SIX4
M04939_2.00
Homo sapiens
NVYGATACVB

VBGTATCRBN
SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX
0.708 0.709
Six4
M09198_2.00
Mus musculus
DGDAABHNSASNNN

NNNSTSNDVTTHCH
Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C
0.708 0.709
SIX4
M10646_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX4_Q3
0.708 0.709
SIX4
M04940_2.00
Homo sapiens
NBGTAWCRHN

NDYGWTACVN
SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX
0.708 0.709
Six4
M00563_2.00
Drosophila melanogaster
NNDANMHNN

NNDKNTHNN
PBM
Busser et al.(2012a)
Six4
0.708 0.673
Six4
M06530_2.00
Drosophila melanogaster
TGABAC

GTVTCA
B1H
Mathelier et al.(2014)
MA0204.1
0.708 0.673
Six4
M06334_2.00
Drosophila melanogaster
WDDTGABAC

GTVTCAHHW
B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364
0.708 0.673
Six4
M06335_2.00
Drosophila melanogaster
NTGAKACB

VGTMTCAN
B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364
0.708 0.673
Six4
M06336_2.00
Drosophila melanogaster
NNNTGABA

TVTCANNN
B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364
0.708 0.673
SIX5
M08208_2.00
Homo sapiens
GARWTGTAGT

ACTACAWYTC
ChIP-seq
Contrino et al.(2012)
Mv121
0.708 0.655
SIX5
M08209_2.00
Homo sapiens
GGAGTTGT

ACAACTCC
ChIP-seq
Contrino et al.(2012)
Mv123
0.708 0.655
SIX5
M10738_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_01
0.708 0.655
SIX5
M10739_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_02
0.708 0.655
ceh-34
M00672_2.00
Caenorhabditis elegans
NNNRDAWNNN

NNNWTHYNNN
PBM
Narasimhan et al.(2015)
pTH9708
0.664 0.618
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000020213 Homeodomain 127 181

Links

Other Homeodomain family TFs
Other Lepisosteus oculatus TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MGA Homo sapiens ENSG00000174197 D 0.000
ENSSTOG00000000653 Ictidomys tridecemlineatus ENSSTOG00000000653 I 0.000
MGA Sorex araneus ENSSARG00000007043 I 0.000
Mga Rattus norvegicus ENSRNOG00000006378 I 0.000
MGA Pteropus vampyrus ENSPVAG00000013732 I 0.000
MGA Pan troglodytes ENSPTRG00000006953 I 0.000
ENSPPYG00000006380 Pongo abelii ENSPPYG00000006380 I 0.000
MGA Procavia capensis ENSPCAG00000013131 I 0.000
MGA Otolemur garnettii ENSOGAG00000016028 I 0.000
MGA Oryctolagus cuniculus ENSOCUG00000006505 I 0.000
MGA Tupaia belangeri ENSTBEG00000002010 I 0.000
XP_002933783 Xenopus tropicalis XP_002933783 I 0.000
ENSTSYG00000014605 Tarsius syrichta ENSTSYG00000014605 I 0.000
Pvit_03503 Pogona vitticeps Pvit_03503 I 0.000
Ogr06446 Ophisaurus gracilis Ogr06446 I 0.000
Gfo_R014126 Geospiza fortis Gfo_R014126 I 0.000
ENSP00000219905 Macaca fascicularis ENSP00000219905 I 0.000
ENSP00000219905-D1 Bos grunniens ENSP00000219905-D1 I 0.000
Cmyd_10013542 Chelonia mydas Cmyd_10013542 I 0.000
Afo_R002341 Aptenodytes forsteri Afo_R002341 I 0.000
Aan_R008874 Calypte anna Aan_R008874 I 0.000
MGA Tursiops truncatus ENSTTRG00000002514 I 0.000
ENSOARG00000020404 Ovis aries ENSOARG00000020404 I 0.000
MGA Ornithorhynchus anatinus ENSOANG00000004502 I 0.000
ENSNLEG00000003750 Nomascus leucogenys ENSNLEG00000003750 I 0.000
ENSFALG00000006030 Ficedula albicollis ENSFALG00000006030 I 0.000
MGA Erinaceus europaeus ENSEEUG00000004604 I 0.000
MGA Equus caballus ENSECAG00000006544 I 0.000
ENSCSAG00000007832 Chlorocebus sabaeus ENSCSAG00000007832 I 0.000
MGA Callithrix jacchus ENSCJAG00000020688 I 0.000
MGA Choloepus hoffmanni ENSCHOG00000012044 I 0.000
MGA Canis familiaris ENSCAFG00000009662 I 0.000
MGA Bos taurus ENSBTAG00000015138 I 0.000
ENSAPLG00000010304 Anas platyrhynchos ENSAPLG00000010304 I 0.000
MGA Felis catus ENSFCAG00000007347 I 0.000
ENSGALG00000008653 Gallus gallus ENSGALG00000008653 I 0.000
Mga Mus musculus ENSMUSG00000033943 I 0.000
ENSMPUG00000008968 Mustela putorius furo ENSMPUG00000008968 I 0.000
MGA Monodelphis domestica ENSMODG00000000052 I 0.000
MGA Myotis lucifugus ENSMLUG00000015227 I 0.000
MGA Microcebus murinus ENSMICG00000001788 I 0.000
MGA Meleagris gallopavo ENSMGAG00000011293 I 0.000
ENSLOCG00000011689 Lepisosteus oculatus ENSLOCG00000011689 I 0.000
ENSLACG00000002619 Latimeria chalumnae ENSLACG00000002619 I 0.000
MGA Gorilla gorilla ENSGGOG00000001640 I 0.000
ENSAMEG00000016587 Ailuropoda melanoleuca ENSAMEG00000016587 I 0.000