IRX1 (Microcebus murinus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSMICG00000011730 T211655_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Irx3
M00453_2.00
Mus musculus
NNDACAHNNN

NNNDTGTHNN
PBM
Berger et al.(2008)
Irx3_0920
0.867 1.000
Irx3
M00454_2.00
Mus musculus
NNDACWHN

NDWGTHNN
PBM
Berger et al.(2008)
Irx3_2226
0.867 1.000
Irx3
M03266_2.00
Mus musculus
WWTKTCATGTWR

YWACATGAMAWW
SELEX
Jolma et al.(2013)
Irx3_1
0.867 1.000
IRX1
M05283_2.00
Homo sapiens
DDCRHNNNNNNNNDYGHH

DDCRHNNNNNNNNDYGHH
SELEX
Yin et al.(2017)
IRX1_eDBD_HT-SELEX
0.867 1.000
IRX3
M05319_2.00
Homo sapiens
DACAHGNWWWWNCDTGTH

DACAHGNWWWWNCDTGTH
SELEX
Yin et al.(2017)
IRX3_eDBD_HT-SELEX
0.867 1.000
IRX1
M05284_2.00
Homo sapiens
NNCRHNNNNNNNNDYVHN

NDBRHNNNNNNNNDYGNN
SELEX
Yin et al.(2017)
IRX1_eDBD_Methyl-HT-SELEX
0.867 1.000
IRX3
M05320_2.00
Homo sapiens
DACRYRHNWWNDYKCGTW

WACGMRHNWWNDYRYGTH
SELEX
Yin et al.(2017)
IRX3_eDBD_Methyl-HT-SELEX
0.867 1.000
mirr
M06514_2.00
Drosophila melanogaster
WWACA

TGTWW
B1H
Mathelier et al.(2014)
MA0233.1
0.834 0.947
mirr
M06305_2.00
Drosophila melanogaster
NDNWWACA

TGTWWNHN
B1H
Zhu et al.(2011)
Mirr_Cell_FBgn0014343
0.834 0.947
mirr
M06306_2.00
Drosophila melanogaster
DDWACA

TGTWHH
B1H
Zhu et al.(2011)
Mirr_SOLEXA_FBgn0014343
0.834 0.947
SNAPOd2T00005194001
M02229_2.00
Oikopleura dioica
NNTACATGTDN

NHACATGTANN
PBM
Weirauch et al.(2014)
pTH5976
0.810 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMICP00000010672 Homeodomain 29 85

Links

Other Homeodomain family TFs
Other Microcebus murinus TFs

291 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29929.m004704 Ricinus communis 29929.m004704 D 0.000
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.000
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.000
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.000
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.000
Bo2g138840 Brassica oleracea Bo2g138840 I 0.000
Bo5g017510 Brassica oleracea Bo5g017510 I 0.000
Bo8g107400 Brassica oleracea Bo8g107400 I 0.000
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.000
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.000
Bra019721 Brassica rapa Bra019721 I 0.000
Bra026903 Brassica rapa Bra026903 I 0.000
Bra036354 Brassica rapa Bra036354 I 0.000
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.000
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.000
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.000
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.000
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.000
Ca_11315 Cicer arietinum Ca_11315 I 0.000
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.000
Cla023054 Citrullus lanatus Cla023054 I 0.000
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.000
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.000
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.000
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.000
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.000
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.000
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.000
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.000
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.000
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.000
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.000
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.000
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.000
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.000
GT-1 Arabidopsis thaliana AT1G13450 D 0.000
GT-4 Arabidopsis thaliana AT3G25990 D 0.000
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.000
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.000
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.000
MDP0000164819 Malus domestica MDP0000164819 D 0.000
MDP0000275412 Malus domestica MDP0000275412 I 0.000
mgf016368m Mimulus guttatus mgf016368m I 0.000
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.000
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.000
OB04G23970 Oryza brachyantha OB04G23970 I 0.000
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.000
OS04G0486400 Oryza sativa OS04G0486400 D 0.000
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.000
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.000
PK20543.1 Cannabis sativa PK20543.1 D 0.000
Pm006885 Prunus mume Pm006885 I 0.000
Pm016214 Prunus mume Pm016214 I 0.000
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.000
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.000
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.000
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.000
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.000
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.000
Si010147m.g Setaria italica Si010147m.g I 0.000
Si036121m.g Setaria italica Si036121m.g I 0.000
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.000
TCM_010751 Theobroma cacao TCM_010751 I 0.000
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.000
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.000
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.000
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.000
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.000