CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PBX1
(
Myotis lucifugus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSMLUG00000006941
T211739_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PBX3
M08132_2.00
Homo sapiens
NNNTGAGTGACAGSNNN
NNNSCTGTCACTCANNN
ChIP-seq
Mathelier et al.(2014)
MA1114.1
0.838
0.909
PBX3
M07971_2.00
Homo sapiens
NNBDRCCAATSRVVD
HBBYSATTGGYHVNN
ChIP-seq
Gerstein et al.(2012)
GM12878_PBX3_HudsonAlpha
0.838
0.909
PBX3
M09155_2.00
Homo sapiens
DGABKGRCRGB
VCYGYCMVTCH
Misc
Kulakovskiy et al.(2013)
PBX3_HUMAN.H11MO.0.A
0.838
0.909
PBX3
M09560_2.00
Homo sapiens
NTGABTGACAGB
VCTGTCAVTCAN
Misc
Heinz et al.(2010)
GM12878-PBX3_GSE32465
0.838
0.909
PBX3
M10732_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_02
0.838
0.909
PBX3
M10733_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_03
0.838
0.909
PBX3
M10734_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_04
0.838
0.909
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMLUP00000006342
Homeodomain
148
196
RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQSIV
ENSMLUP00000006342
Homeodomain
208
227
GSPTSCVSNWFGNKRIRYKK
Links
Other
Homeodomain
family TFs
Other
Myotis lucifugus
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PBX3
Gorilla gorilla
ENSGGOG00000009025
I
0.838
PBX3
Pteropus vampyrus
ENSPVAG00000000742
I
0.838
PBX3
Homo sapiens
ENSG00000167081
D
0.838
ENSNLEG00000017398
Nomascus leucogenys
ENSNLEG00000017398
I
0.838
PBX1
Oryctolagus cuniculus
ENSOCUG00000007609
I
0.830
ENSP00000362586-D3
Bos grunniens
ENSP00000362586-D3
I
0.830
ENSP00000362586
Macaca fascicularis
ENSP00000362586
I
0.829
PBX3
Procavia capensis
ENSPCAG00000006303
I
0.828
ENSAMEG00000016625
Ailuropoda melanoleuca
ENSAMEG00000016625
I
0.820
pbx3b
Oryzias latipes
ENSORLG00000013269
I
0.819
TsM_000683000
Taenia solium
TsM_000683000
I
0.818
pbx3b
Takifugu rubripes
ENSTRUG00000008751
I
0.813
pbx3b
Gasterosteus aculeatus
ENSGACG00000011999
I
0.809
PBX2
Echinops telfairi
ENSETEG00000018718
I
0.745
maker-nMf.1.1.scaf02297-augustus-gene-0.11
Meloidogyne floridensis
maker-nMf.1.1.scaf02297-augustus-gene-0.11
I
0.683
CRE23691
Caenorhabditis remanei
CRE23691
I
0.665
CapteG223738
Capitella teleta
CapteG223738
I
0.660
PBX3
Echinops telfairi
ENSETEG00000012611
I
0.655
ENSDORG00000000463
Dipodomys ordii
ENSDORG00000000463
I
0.655
BGLB003173
Biomphalaria glabrata
BGLB003173
I
0.602