PBX3 (Macaca mulatta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSMMUG00000013763 T211959_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Pbx3
M09205_2.00
Mus musculus
BBBTGATTGRYNDN

NHNRYCAATCAVVV
Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A
0.844 0.912
Pbx1
M00513_2.00
Mus musculus
NNDKANNNN

NNNNTMHNN
PBM
Berger et al.(2008)
Pbx1_3203
0.865 0.965
PBX1
M05362_2.00
Homo sapiens
NTGATKGAYR

YRTCMATCAN
SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX
0.865 0.965
PBX1
M05364_2.00
Homo sapiens
DTGMTKGRYN

NRYCMAKCAH
SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX
0.865 0.965
PBX1
M02685_2.00
Homo sapiens
WWTGATTGATND

HNATCAATCAWW
SELEX
Mathelier et al.(2014)
MA0070.1
0.865 0.965
PBX2
M08134_2.00
Homo sapiens
NWGAKTGACABN

NVTGTCAMTCWN
ChIP-seq
Mathelier et al.(2014)
MA1113.1
0.844 0.895
PBX1
M09164_2.00
Homo sapiens
DGABTGRCRG

CYGYCAVTCH
Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A
0.844 0.895
PBX2
M09165_2.00
Homo sapiens
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C
0.844 0.895
Pbx2
M09199_2.00
Mus musculus
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C
0.844 0.895
PBX1
M09561_2.00
Homo sapiens
TGABTGACAGSC

GSCTGTCAVTCA
Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007
0.865 0.965
PBX1
M10748_2.00
Homo sapiens
WTKATTRDT

AHYAATMAW
Transfac
Matys et al.(2006)
V$PBX1_01
0.865 0.965
PBX1
M10749_2.00
Homo sapiens
DNHTTGATTGATKDB

VHMATCAATCAADNH
Transfac
Matys et al.(2006)
V$PBX1_02
0.865 0.965
PBX1
M10750_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_03
0.865 0.965
PBX1
M10751_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_05
0.844 0.895
PBX1
M10752_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_10
0.844 0.895
PBX1
M10753_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_Q3
0.844 0.895
PBX1
M05363_2.00
Homo sapiens
DTGAKKGAYG

CRTCMMTCAH
SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX
0.844 0.895
PBX1
M05365_2.00
Homo sapiens
MRTCAATCMH

DKGATTGAYK
SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX
0.865 0.965
pbx4
M02110_2.00
Tetraodon nigroviridis
TTGAYGDV

BHCRTCAA
PBM
Weirauch et al.(2014)
pTH6425
0.865 0.947
exd
M06487_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Mathelier et al.(2014)
MA0222.1
0.820 0.947
PBX4
M00277_2.00
Homo sapiens
NNDDWHDNNN

NNNHDWHHNN
PBM
Barrera et al.(2016)
PBX4_REF
0.813 0.825
exd
M06243_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611
0.820 0.947
PBX4
M10649_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX4_01
0.813 0.825
exd
M06244_2.00
Drosophila melanogaster
NWRNWYNAAA

TTTNRWNYWN
B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611
0.820 0.947
exd
M06245_2.00
Drosophila melanogaster
NDTGAYRW

WYRTCAHN
B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611
0.820 0.947
exd
M06246_2.00
Drosophila melanogaster
NNDTGAYR

YRTCAHNN
B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611
0.820 0.947
CBG10835
M01243_2.00
Caenorhabditis briggsae
NNTKAYDNN

NNHRTMANN
PBM
Lambert et al.(2019)
pTH11444
0.691 0.579
PBX4
M00276_2.00
Homo sapiens
NYTAATTADNN

NNHTAATTARN
PBM
Barrera et al.(2016)
PBX4_R215Q
0.675 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000018095 Homeodomain 235 294
ENSMMUP00000018096 Homeodomain 235 314
ENSMMUP00000018097 Homeodomain 235 294

Links

Other Homeodomain family TFs
Other Macaca mulatta TFs

437 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28077.m000081 Ricinus communis 28077.m000081 I 0.000
29815.m000504 Ricinus communis 29815.m000504 I 0.000
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.000
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.000
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.000
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.000
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.000
Bo5g137800 Brassica oleracea Bo5g137800 I 0.000
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.000
Bra029812 Brassica rapa Bra029812 I 0.000
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.000
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.000
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.000
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.000
Ca_20148 Cicer arietinum Ca_20148 I 0.000
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.000
Cla018015 Citrullus lanatus Cla018015 I 0.000
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.000
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.000
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.000
F775_31501 Aegilops tauschii F775_31501 I 0.000
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.000
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.000
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.000
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.000
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.000
GLYMA20G33031 Glycine max GLYMA20G33031 I 0.000
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.000
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.000
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.000
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.000
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.000
MDP0000201016 Malus domestica MDP0000201016 I 0.000
MDP0000399495 Malus domestica MDP0000399495 I 0.000
MDP0000415733 Malus domestica MDP0000415733 I 0.000
mgf008067m Mimulus guttatus mgf008067m I 0.000
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.000
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.000
OB04G18670 Oryza brachyantha OB04G18670 I 0.000
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.000
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.000
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.000
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.000
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.000
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.000
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.000
PK04914.1 Cannabis sativa PK04914.1 D 0.000
Pm026265 Prunus mume Pm026265 I 0.000
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.000
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.000
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.000
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.000
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.000
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.000
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.000
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.000
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.000
Si009787m.g Setaria italica Si009787m.g I 0.000
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.000
TCM_022397 Theobroma cacao TCM_022397 I 0.000
TCM_043551 Theobroma cacao TCM_043551 I 0.000
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.000
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.000
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.000
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.000
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.000
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.000