Irx3 (Mus musculus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSMUSG00000031734 T212466_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Irx3
M00453_2.00
Mus musculus
NNDACAHNNN

NNNDTGTHNN
PBM
Berger et al.(2008)
Irx3_0920
(Direct) (Direct)
Irx3
M00454_2.00
Mus musculus
NNDACWHN

NDWGTHNN
PBM
Berger et al.(2008)
Irx3_2226
(Direct) (Direct)
Irx3
M03266_2.00
Mus musculus
WWTKTCATGTWR

YWACATGAMAWW
SELEX
Jolma et al.(2013)
Irx3_1
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IRX1
M05283_2.00
Homo sapiens
DDCRHNNNNNNNNDYGHH

DDCRHNNNNNNNNDYGHH
SELEX
Yin et al.(2017)
IRX1_eDBD_HT-SELEX
0.867 1.000
IRX3
M05319_2.00
Homo sapiens
DACAHGNWWWWNCDTGTH

DACAHGNWWWWNCDTGTH
SELEX
Yin et al.(2017)
IRX3_eDBD_HT-SELEX
0.867 1.000
IRX1
M05284_2.00
Homo sapiens
NNCRHNNNNNNNNDYVHN

NDBRHNNNNNNNNDYGNN
SELEX
Yin et al.(2017)
IRX1_eDBD_Methyl-HT-SELEX
0.867 1.000
IRX3
M05320_2.00
Homo sapiens
DACRYRHNWWNDYKCGTW

WACGMRHNWWNDYRYGTH
SELEX
Yin et al.(2017)
IRX3_eDBD_Methyl-HT-SELEX
0.867 1.000
mirr
M06514_2.00
Drosophila melanogaster
WWACA

TGTWW
B1H
Mathelier et al.(2014)
MA0233.1
0.834 0.947
mirr
M06305_2.00
Drosophila melanogaster
NDNWWACA

TGTWWNHN
B1H
Zhu et al.(2011)
Mirr_Cell_FBgn0014343
0.834 0.947
mirr
M06306_2.00
Drosophila melanogaster
DDWACA

TGTWHH
B1H
Zhu et al.(2011)
Mirr_SOLEXA_FBgn0014343
0.834 0.947
SNAPOd2T00005194001
M02229_2.00
Oikopleura dioica
NNTACATGTDN

NHACATGTANN
PBM
Weirauch et al.(2014)
pTH5976
0.810 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00453_2.00 Homeodomain 18 75
M00454_2.00 Homeodomain 18 75

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000091002 Homeodomain 133 190
ENSMUSP00000135488 Homeodomain 133 190

Links

Other Homeodomain family TFs
Other Mus musculus TFs

Invalid Input OrderBy

292 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action