CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Nkx3-2
(
Mus musculus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSMUSG00000049691
T212530_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of chondrocyte differentiation and negative regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including animal organ development; embryonic skeletal system development; and intestinal epithelial cell development. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; genitourinary system; and limb. Orthologous to human NKX3-2 (NK3 homeobox 2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nkx3-2
M00506_2.00
Mus musculus
NNRAGDRNN
NNYHCTYNN
PBM
Berger et al.(2008)
Bapx1_2343
(Direct)
(Direct)
Nkx3-2
M09212_2.00
Mus musculus
TTAAGTGBNH
DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_MOUSE.H11MO.0.B
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NKX3-2
M05012_2.00
Homo sapiens
NNTAAGTGSN
NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_HT-SELEX
0.867
1.000
NKX3-2
M09138_2.00
Homo sapiens
TTAAGTGBNH
DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_HUMAN.H11MO.0.C
0.867
1.000
NKX3-2
M10663_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX32_01
0.867
1.000
NKX3-2
M05013_2.00
Homo sapiens
NNTAAGTGBN
NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_1
0.867
1.000
NKX3-2
M05014_2.00
Homo sapiens
NTAACGHB
VDCGTTAN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_2
0.867
1.000
bap
M00560_2.00
Drosophila melanogaster
NDAAGTRBNN
NNVYACTTHN
PBM
Busser et al.(2012a)
Bap
0.855
0.877
bap
M02119_2.00
Drosophila melanogaster
NYTAAGTRSNN
NNSYACTTARN
PBM
Weirauch et al.(2014)
pTH5945
0.855
0.877
bap
M03812_2.00
Drosophila melanogaster
NNTAAGTGBN
NVCACTTANN
SELEX
Nitta et al.(2015)
bap_1
0.855
0.877
bap
M06504_2.00
Drosophila melanogaster
TTAAGTR
YACTTAA
B1H
Mathelier et al.(2014)
MA0211.1
0.855
0.877
bap
M06287_2.00
Drosophila melanogaster
NBTTAAGTRN
NYACTTAAVN
B1H
Zhu et al.(2011)
Bap_Cell_FBgn0004862
0.855
0.877
bap
M06288_2.00
Drosophila melanogaster
NYTAAKTR
YAMTTARN
B1H
Zhu et al.(2011)
Bap_SOLEXA_FBgn0004862
0.855
0.877
Nkx3-1
M00170_2.00
Mus musculus
NDAAGTRBNN
NNVYACTTHN
PBM
Badis et al.(2009)
Nkx3-1_2923
0.838
0.842
Nkx3-1
M00420_2.00
Mus musculus
NNAAGTRBNN
NNVYACTTNN
PBM
Berger et al.(2008)
Nkx3-1_2923
0.838
0.842
NKX3-1
M05255_2.00
Homo sapiens
NNTAAGTGSN
NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_HT-SELEX
0.838
0.842
NKX3-1
M09154_2.00
Homo sapiens
NYDAAGTGBYWD
HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_HUMAN.H11MO.0.C
0.838
0.842
Nkx3-1
M09184_2.00
Mus musculus
NYDAAGTGBYWD
HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_MOUSE.H11MO.0.C
0.838
0.842
NKX3-1
M09559_2.00
Homo sapiens
BTRAGTRBYY
RRVYACTYAV
Misc
Heinz et al.(2010)
LNCaP-Nkx3.1_GSE28264
0.838
0.842
NKX3-1
M10729_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_01
0.838
0.842
NKX3-1
M10730_2.00
Homo sapiens
NWWTAAGTATWH
DWATACTTAWWN
Transfac
Matys et al.(2006)
V$NKX3A_01
0.838
0.842
NKX3-1
M10731_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX3A_Q3
0.838
0.842
NKX3-1
M05256_2.00
Homo sapiens
NNTAAGTGBN
NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_1
0.838
0.842
NKX3-1
M05257_2.00
Homo sapiens
NTAAYSWB
VWSRTTAN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_2
0.838
0.842
ENSCING00000007395
M02076_2.00
Ciona intestinalis
NNNDWNWR
YWNWHNNN
PBM
Weirauch et al.(2014)
pTH5922
0.825
0.684
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00506_2.00
Homeodomain
17
73
KRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000051990
Homeodomain
207
263
KRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR
Links
Other
Homeodomain
family TFs
Other
Mus musculus
TFs
222 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy