CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pbx1
(
Mus musculus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSMUSG00000052534
T212539_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
This gene encodes a homeobox protein that belongs to the three-amino-acid loop extension/Pre-B cell leukemia transcription factor (TALE/PBX) family of proteins. The encoded protein is involved in several biological processes during embryogenesis including steroidogenesis, sexual development and the maintenance of hematopoietic stem cells. This protein functions in the development of several organ systems and plays a role in skeletal patterning and programming. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2014]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pbx1
M00513_2.00
Mus musculus
NNDKANNNN
NNNNTMHNN
PBM
Berger et al.(2008)
Pbx1_3203
(Direct)
(Direct)
Pbx1
M09213_2.00
Mus musculus
TGABTGRCRGV
BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PBX1_MOUSE.H11MO.0.A
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PBX1
M05362_2.00
Homo sapiens
NTGATKGAYR
YRTCMATCAN
SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX
0.867
1.000
PBX1
M05364_2.00
Homo sapiens
DTGMTKGRYN
NRYCMAKCAH
SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX
0.867
1.000
PBX1
M02685_2.00
Homo sapiens
WWTGATTGATND
HNATCAATCAWW
SELEX
Mathelier et al.(2014)
MA0070.1
0.867
1.000
PBX1
M09164_2.00
Homo sapiens
DGABTGRCRG
CYGYCAVTCH
Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A
0.867
1.000
PBX1
M09561_2.00
Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA
Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007
0.867
1.000
PBX1
M10748_2.00
Homo sapiens
WTKATTRDT
AHYAATMAW
Transfac
Matys et al.(2006)
V$PBX1_01
0.867
1.000
PBX1
M10749_2.00
Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH
Transfac
Matys et al.(2006)
V$PBX1_02
0.867
1.000
PBX1
M10750_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_03
0.867
1.000
PBX1
M10751_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_05
0.867
1.000
PBX1
M10752_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_10
0.867
1.000
PBX1
M10753_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_Q3
0.867
1.000
PBX1
M05363_2.00
Homo sapiens
DTGAKKGAYG
CRTCMMTCAH
SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX
0.867
1.000
PBX1
M05365_2.00
Homo sapiens
MRTCAATCMH
DKGATTGAYK
SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX
0.867
1.000
pbx4
M02110_2.00
Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA
PBM
Weirauch et al.(2014)
pTH6425
0.867
0.982
PBX2
M08134_2.00
Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN
ChIP-seq
Mathelier et al.(2014)
MA1113.1
0.867
0.965
PBX2
M09165_2.00
Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C
0.867
0.965
Pbx2
M09199_2.00
Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C
0.867
0.965
Pbx3
M09205_2.00
Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV
Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A
0.865
0.965
exd
M06487_2.00
Drosophila melanogaster
YRTCAAAN
NTTTGAYR
B1H
Mathelier et al.(2014)
MA0222.1
0.822
0.947
exd
M06243_2.00
Drosophila melanogaster
YRTCAAAN
NTTTGAYR
B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611
0.822
0.947
exd
M06244_2.00
Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN
B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611
0.822
0.947
exd
M06245_2.00
Drosophila melanogaster
NDTGAYRW
WYRTCAHN
B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611
0.822
0.947
exd
M06246_2.00
Drosophila melanogaster
NNDTGAYR
YRTCAHNN
B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611
0.822
0.947
PBX4
M00277_2.00
Homo sapiens
NNDDWHDNNN
NNNHDWHHNN
PBM
Barrera et al.(2016)
PBX4_REF
0.815
0.877
PBX4
M10649_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX4_01
0.815
0.877
CBG10835
M01243_2.00
Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN
PBM
Lambert et al.(2019)
pTH11444
0.691
0.579
PBX4
M00276_2.00
Homo sapiens
NYTAATTADNN
NNHTAATTARN
PBM
Barrera et al.(2016)
PBX4_R215Q
0.677
0.860
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00513_2.00
Homeodomain
17
76
RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000066385
Homeodomain
234
282
RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVDT
ENSMUSP00000072640
Homeodomain
234
293
RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK
ENSMUSP00000134925
Homeodomain
234
293
RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK
ENSMUSP00000135516
Homeodomain
234
293
RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK
ENSMUSP00000140606
Homeodomain
234
293
RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK
Links
Other
Homeodomain
family TFs
Other
Mus musculus
TFs
472 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy