Obox1 (Mus musculus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSMUSG00000054310 T212544_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Obox1
M00515_2.00		 Mus musculus
NTAATCYNNN
NNNRGATTAN		 PBM
Berger et al.(2008)
Obox1_3970		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Obox3
M00523_2.00 		Mus musculus
NWWATMN
NKATWWN		 PBM
Berger et al.(2008)
Obox3_3439 		0.855 0.930
Obox5
M00527_2.00 		Mus musculus
NTWATHNN
NNDATWAN		 PBM
Berger et al.(2008)
Obox5_2284 		0.855 0.912
Obox5
M00528_2.00 		Mus musculus
NWDATHNN
NNDATHWN		 PBM
Berger et al.(2008)
Obox5_3963 		0.855 0.912
Q8VHG7_MOUSE
M00529_2.00 		Mus musculus
WTAATCCH
DGGATTAW		 PBM
Berger et al.(2008)
Obox2_3438 		0.832 0.965
Obox6
M00490_2.00 		Mus musculus
NTAATCYNN
NNRGATTAN		 PBM
Berger et al.(2008)
Obox6_3440 		0.689 0.579
NEMVEDRAFT_v1g113057
M02144_2.00 		Nematostella vectensis
NYTAATCCBN
NVGGATTARN		 PBM
Weirauch et al.(2014)
pTH6135 		0.617 0.386
Gsc
M00411_2.00 		Mus musculus
NNTAATYBN
NVRATTANN		 PBM
Berger et al.(2008)
Gsc_2327 		0.607 0.404
GSC
M03146_2.00 		Homo sapiens
NHTAATCCNH
DNGGATTADN		 SELEX
Jolma et al.(2013)
GSC_1 		0.607 0.404
GSC
M05134_2.00 		Homo sapiens
NTAATCCB
VGGATTAN		 SELEX
Yin et al.(2017)
GSC_eDBD_HT-SELEX 		0.607 0.404
GSC
M05136_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
GSC_FL_HT-SELEX 		0.607 0.404
gsc
M09584_2.00 		Xenopus tropicalis
NTAATCYN
NRGATTAN		 Misc
Heinz et al.(2010)
FrogEmbryos-GSC_DRA000576 		0.607 0.404
GSC
M05135_2.00 		Homo sapiens
HTAATCCB
VGGATTAD		 SELEX
Yin et al.(2017)
GSC_eDBD_Methyl-HT-SELEX 		0.607 0.404
GSC
M05137_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
GSC_FL_Methyl-HT-SELEX 		0.607 0.404
ceh-37
M00674_2.00 		Caenorhabditis elegans
HTAATCYN
NRGATTAD		 PBM
Narasimhan et al.(2015)
pTH10716 		0.604 0.404
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00515_2.00 Homeodomain 95 151

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000067691 Homeodomain 95 151
ENSMUSP00000133496 Homeodomain 95 151
ENSMUSP00000133504 Homeodomain 95 151
ENSMUSP00000134043 Homeodomain 95 151
ENSMUSP00000134688 Homeodomain 95 151
ENSMUSP00000138010 Homeodomain 95 151

Links

Other Homeodomain family TFs
Other Mus musculus TFs

Invalid Input OrderBy

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action