CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Obox5
(
Mus musculus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSMUSG00000074366
T212576_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Obox5
M00527_2.00
Mus musculus
NTWATHNN
NNDATWAN
PBM
Berger et al.(2008)
Obox5_2284
(Direct)
(Direct)
Obox5
M00528_2.00
Mus musculus
NWDATHNN
NNDATHWN
PBM
Berger et al.(2008)
Obox5_3963
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Obox3
M00523_2.00
Mus musculus
NWWATMN
NKATWWN
PBM
Berger et al.(2008)
Obox3_3439
0.865
0.895
Obox1
M00515_2.00
Mus musculus
NTAATCYNNN
NNNRGATTAN
PBM
Berger et al.(2008)
Obox1_3970
0.855
0.912
Q8VHG7_MOUSE
M00529_2.00
Mus musculus
WTAATCCH
DGGATTAW
PBM
Berger et al.(2008)
Obox2_3438
0.821
0.877
Obox6
M00490_2.00
Mus musculus
NTAATCYNN
NNRGATTAN
PBM
Berger et al.(2008)
Obox6_3440
0.689
0.614
NEMVEDRAFT_v1g113057
M02144_2.00
Nematostella vectensis
NYTAATCCBN
NVGGATTARN
PBM
Weirauch et al.(2014)
pTH6135
0.617
0.386
Gsc
M00411_2.00
Mus musculus
NNTAATYBN
NVRATTANN
PBM
Berger et al.(2008)
Gsc_2327
0.607
0.404
GSC
M03146_2.00
Homo sapiens
NHTAATCCNH
DNGGATTADN
SELEX
Jolma et al.(2013)
GSC_1
0.607
0.404
GSC
M05134_2.00
Homo sapiens
NTAATCCB
VGGATTAN
SELEX
Yin et al.(2017)
GSC_eDBD_HT-SELEX
0.607
0.404
GSC
M05136_2.00
Homo sapiens
HTAATCCN
NGGATTAD
SELEX
Yin et al.(2017)
GSC_FL_HT-SELEX
0.607
0.404
gsc
M09584_2.00
Xenopus tropicalis
NTAATCYN
NRGATTAN
Misc
Heinz et al.(2010)
FrogEmbryos-GSC_DRA000576
0.607
0.404
GSC
M05135_2.00
Homo sapiens
HTAATCCB
VGGATTAD
SELEX
Yin et al.(2017)
GSC_eDBD_Methyl-HT-SELEX
0.607
0.404
GSC
M05137_2.00
Homo sapiens
HTAATCCN
NGGATTAD
SELEX
Yin et al.(2017)
GSC_FL_Methyl-HT-SELEX
0.607
0.404
ceh-37
M00674_2.00
Caenorhabditis elegans
HTAATCYN
NRGATTAD
PBM
Narasimhan et al.(2015)
pTH10716
0.604
0.404
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00527_2.00
Homeodomain
17
73
RKERTVYTKEQQRLLQKHFDECQYPNEKKIMELAVSVGVTKMEIKIWFKNNRAKYRR
M00528_2.00
Homeodomain
14
70
RKERTVYTKEQQRLLQKHFDECQYPNEKKIMELAVSVGVTKMEIKIWFKNNRAKYRR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000096400
Homeodomain
95
151
RKERTVYTKEQQRLLQKHFDECQYPNEKKIMELAVSVGVTKMEIKIWFKNNRAKYRR
ENSMUSP00000134468
Homeodomain
95
151
RKERTVYTKEQQRLLQKHFDECQYPNEKKIMELAVSVGVTKMEIKIWFKNNRAKYRR
ENSMUSP00000134618
Homeodomain
95
151
RKERTVYTKEQQRLLQKHFDECQYPNEKKIMELAVSVGVTKMEIKIWFKNNRAKYRR
Links
Other
Homeodomain
family TFs
Other
Mus musculus
TFs
132 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy