CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Q8VHG7_MOUSE
(
Mus musculus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSMUSG00000074369
T212577_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q8VHG7_MOUSE
M00529_2.00
Mus musculus
WTAATCCH
DGGATTAW
PBM
Berger et al.(2008)
Obox2_3438
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Obox1
M00515_2.00
Mus musculus
NTAATCYNNN
NNNRGATTAN
PBM
Berger et al.(2008)
Obox1_3970
0.832
0.965
Obox3
M00523_2.00
Mus musculus
NWWATMN
NKATWWN
PBM
Berger et al.(2008)
Obox3_3439
0.821
0.895
Obox5
M00527_2.00
Mus musculus
NTWATHNN
NNDATWAN
PBM
Berger et al.(2008)
Obox5_2284
0.821
0.877
Obox5
M00528_2.00
Mus musculus
NWDATHNN
NNDATHWN
PBM
Berger et al.(2008)
Obox5_3963
0.821
0.877
Obox6
M00490_2.00
Mus musculus
NTAATCYNN
NNRGATTAN
PBM
Berger et al.(2008)
Obox6_3440
0.654
0.544
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00529_2.00
Homeodomain
17
73
RKERTVYTKEEQGLLQKHFDECQYPNKKKIVELALSVGVTKREIKIWFKNNRAKYRQ
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Q8VHG7_MOUSE
Homeodomain
95
151
RKERTVYTKEEQGLLQKHFDECQYPNKKKIVELALSVGVTKREIKIWFKNNRAKYRQ
Links
Other
Homeodomain
family TFs
Other
Mus musculus
TFs
47 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Obox1
Mus musculus
ENSMUSG00000054310
D
0.832
Obox3
Mus musculus
ENSMUSG00000066772
D
0.821
Obox5
Mus musculus
ENSMUSG00000074366
D
0.821
LOC100361016
Rattus norvegicus
ENSRNOG00000021972
I
0.714
AABR07002351.2
Rattus norvegicus
ENSRNOG00000060136
I
0.710
Obox2
Rattus norvegicus
ENSRNOG00000032891
I
0.708
Obox7
Mus musculus
ENSMUSG00000055942
I
0.669
Obox6
Mus musculus
ENSMUSG00000041583
D
0.654
ENSNLEG00000000972
Nomascus leucogenys
ENSNLEG00000000972
I
0.640
TPRX1
Homo sapiens
ENSG00000178928
I
0.634
ENSPTRG00000011217
Pan troglodytes
ENSPTRG00000011217
I
0.634
RGD1564236
Rattus norvegicus
ENSRNOG00000029702
I
0.634
ENSOGAG00000028694
Otolemur garnettii
ENSOGAG00000028694
I
0.633
HmN_000666600
Hymenolepis microstoma
HmN_000666600
I
0.627
L892_g12531
Steinernema scapterisci
L892_g12531
I
0.625
L596_g2971
Steinernema carpocapsae
L596_g2971
I
0.625
ENSOGAG00000025340
Otolemur garnettii
ENSOGAG00000025340
I
0.620
LEUTX
Callithrix jacchus
ENSCJAG00000007650
I
0.618
RSKR_0000992600
Rhabditophanes kr3021
RSKR_0000992600
I
0.613
ENSFCAG00000026142
Felis catus
ENSFCAG00000026142
I
0.612
A_06523
Schistosoma haematobium
A_06523
I
0.612
HCOI01021200
Haemonchus contortus
HCOI01021200
I
0.611
HPBE_0001132001
Heligmosomoides bakeri
HPBE_0001132001
I
0.611
HCOI00475500
Haemonchus contortus
HCOI00475500
I
0.611
TELCIR_16419
Teladorsagia circumcincta
TELCIR_16419
I
0.611
SVE_0230200
Strongyloides venezuelensis
SVE_0230200
I
0.609
SVUK_0001103601
Strongylus vulgaris
SVUK_0001103601
I
0.609
SSTP_0000819600
Strongyloides stercoralis
SSTP_0000819600
I
0.609
SPAL_0000625000
Strongyloides papillosus
SPAL_0000625000
I
0.609
OESDEN_03496
Oesophagostomum dentatum
OESDEN_03496
I
0.609
NECAME_10077
Necator americanus
NECAME_10077
I
0.609
ANCDUO_14286
Ancylostoma duodenale
ANCDUO_14286
I
0.609
ANCCAN_08871
Ancylostoma caninum
ANCCAN_08871
I
0.609
ANCCEY_05795
Ancylostoma ceylanicum
ANCCEY_05795
I
0.609
L898_g21665
Steinernema monticolum
L898_g21665
I
0.605
L596_g2968
Steinernema carpocapsae
L596_g2968
I
0.605
L892_g12528
Steinernema scapterisci
L892_g12528
I
0.605
L889_g6140
Steinernema feltiae
L889_g6140
I
0.605
maker-nMf.1.1.scaf00264-augustus-gene-0.11
Meloidogyne floridensis
maker-nMf.1.1.scaf00264-augustus-gene-0.11
I
0.602
Minc06536
Meloidogyne incognita
Minc06536
I
0.602
ALUE_0001748601
Ascaris lumbricoides
ALUE_0001748601
I
0.601
TCNE_0001409601
Toxocara canis
TCNE_0001409601
I
0.601
PEQ_0000979001
Parascaris equorum
PEQ_0000979001
I
0.601
ASIM_0000127601
Anisakis simplex
ASIM_0000127601
I
0.601
ASIM_0000120601
Anisakis simplex
ASIM_0000120601
I
0.601
LEUTX
Gorilla gorilla
ENSGGOG00000027834
I
0.600
ENSP00000407583
Macaca fascicularis
ENSP00000407583
I
0.600