CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Q8VHG7_MOUSE
(
Mus musculus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSMUSG00000074369
T212577_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in early conceptus. [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q8VHG7_MOUSE
M00529_2.00
Mus musculus
WTAATCCH
DGGATTAW
PBM
Berger et al.(2008)
Obox2_3438
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Obox1
M00515_2.00
Mus musculus
NTAATCYNNN
NNNRGATTAN
PBM
Berger et al.(2008)
Obox1_3970
0.832
0.965
Obox3
M00523_2.00
Mus musculus
NWWATMN
NKATWWN
PBM
Berger et al.(2008)
Obox3_3439
0.821
0.895
Obox5
M00527_2.00
Mus musculus
NTWATHNN
NNDATWAN
PBM
Berger et al.(2008)
Obox5_2284
0.821
0.877
Obox5
M00528_2.00
Mus musculus
NWDATHNN
NNDATHWN
PBM
Berger et al.(2008)
Obox5_3963
0.821
0.877
Obox6
M00490_2.00
Mus musculus
NTAATCYNN
NNRGATTAN
PBM
Berger et al.(2008)
Obox6_3440
0.654
0.544
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00529_2.00
Homeodomain
17
73
RKERTVYTKEEQGLLQKHFDECQYPNKKKIVELALSVGVTKREIKIWFKNNRAKYRQ
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Q8VHG7_MOUSE
Homeodomain
95
151
RKERTVYTKEEQGLLQKHFDECQYPNKKKIVELALSVGVTKREIKIWFKNNRAKYRQ
Links
Other
Homeodomain
family TFs
Other
Mus musculus
TFs
47 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy