CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSONIG00000012243
(
Oreochromis niloticus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSONIG00000012243
T213604_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
O76842_CUPSA
M02199_2.00
Cupiennius salei
TTAATTAB
VTAATTAA
PBM
Weirauch et al.(2014)
pTH6251
0.632
0.768
HOXB1
M05057_2.00
Homo sapiens
NTAATTAS
STAATTAN
SELEX
Yin et al.(2017)
HOXB1_eDBD_HT-SELEX
0.622
0.732
HOXB1
M05058_2.00
Homo sapiens
GTAATBAN
NTVATTAC
SELEX
Yin et al.(2017)
HOXB1_eDBD_Methyl-HT-SELEX_1
0.622
0.732
HOXB1
M05059_2.00
Homo sapiens
NTRAYGMB
VKCRTYAN
SELEX
Yin et al.(2017)
HOXB1_eDBD_Methyl-HT-SELEX_2
0.622
0.732
HOXB13
M02092_2.00
Homo sapiens
NTTWAYDDNN
NNHHRTWAAN
PBM
Weirauch et al.(2014)
pTH5808
0.605
0.518
Hoxb13
M00505_2.00
Mus musculus
NTTWAYDDNN
NNHHRTWAAN
PBM
Berger et al.(2008)
Hoxb13_3479
0.605
0.518
HOXB13
M03175_2.00
Homo sapiens
DTTTTATKGG
CCMATAAAAH
SELEX
Jolma et al.(2013)
HOXB13_1
0.605
0.518
HOXB13
M03176_2.00
Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV
SELEX
Jolma et al.(2013)
HOXB13_2
0.605
0.518
HOXB13
M05201_2.00
Homo sapiens
DTTTTATKGGN
NCCMATAAAAH
SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_1
0.605
0.518
HOXB13
M05202_2.00
Homo sapiens
NCTCGTAAAHH
DDTTTACGAGN
SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_2
0.605
0.518
HOXB13
M09149_2.00
Homo sapiens
TTTTATDRSN
NSYHATAAAA
Misc
Kulakovskiy et al.(2013)
HXB13_HUMAN.H11MO.0.A
0.605
0.518
HOXB13
M05203_2.00
Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN
SELEX
Yin et al.(2017)
HOXB13_eDBD_Methyl-HT-SELEX
0.605
0.518
Hoxd1
M00492_2.00
Mus musculus
NRATNDNN
NNHNATYN
PBM
Berger et al.(2008)
Hoxd1_3448
0.604
0.768
Hoxd1
M10768_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD1_03
0.604
0.768
HOXD1
M05098_2.00
Homo sapiens
BTAATTAV
BTAATTAV
SELEX
Yin et al.(2017)
HOXD1_eDBD_HT-SELEX
0.602
0.750
HOXD1
M05099_2.00
Homo sapiens
BTAATKAV
BTMATTAV
SELEX
Yin et al.(2017)
HOXD1_eDBD_Methyl-HT-SELEX_1
0.602
0.750
HOXD1
M05100_2.00
Homo sapiens
NTWAYGAB
VTCRTWAN
SELEX
Yin et al.(2017)
HOXD1_eDBD_Methyl-HT-SELEX_2
0.602
0.750
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSONIP00000015420
Homeodomain
210
265
PPRISYSTKQLTELEKEFHFNKYLTRARRVEVAGALQLSETQVKVWFQNRRMKEKK
Links
Other
Homeodomain
family TFs
Other
Oreochromis niloticus
TFs
264 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy